Ggra6447.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6447.t1
Unique NameGgra6447.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length275
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:75761..76637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6447Ggra6447Gracilaria gracilis GNS1m malegenetig00000074_pilon 75761..76637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6447.t1Ggra6447.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 75761..76637 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6447.t1.start1Ggra6447.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 75761..75763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6447.t1.CDS1Ggra6447.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 75761..75956 +
Ggra6447.t1.CDS2Ggra6447.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000074_pilon 76009..76637 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6447.t1.exon1Ggra6447.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 75761..75956 +
Ggra6447.t1.exon2Ggra6447.t1.exon2Gracilaria gracilis GNS1m maleexontig00000074_pilon 76009..76637 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6447.t1.intron1Ggra6447.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000074_pilon 75957..76008 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6447.t1.stop1Ggra6447.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 76635..76637 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6447.t1 ID=Ggra6447.t1|Name=Ggra6447.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=275bp
MSPPGRLTSKSKAVQHLRTLLSSGKLSGEEDPSFVHKADPVFTPYKLDNF
RSAYNRIRRELALPKSREFGVVDLEAKCTADEEILPDTKRQKTTQEESND
AEVEYVEEENGEETHFDECFKPFYSFGMWEEAKTGTKRLSVAILLFSGVT
ADDFTVHVLPGGRVLEMRCAWPWVFTDVNVLHRRWFNLENGQQITDYHPK
LNAFELFYRNLRERSSDEVYAVSRIRLPFIVETHILESHLLGWRESEAKG
VYVELRSLREQYAITNEKKEFRIY*
back to top

spliced messenger RNA

>Ggra6447.t1 ID=Ggra6447.t1|Name=Ggra6447.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=825bp|location=Sequence derived from alignment at tig00000074_pilon:75761..76637+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCCACCAGGGAGGCTCACGTCGAAGTCCAAAGCTGTCCAGCACCT
GCGCACTCTACTATCTTCCGGAAAGTTGTCAGGGGAAGAGGATCCGAGCT
TTGTACATAAGGCAGATCCCGTCTTTACCCCTTATAAACTGGACAATTTT
CGCTCCGCCTACAACCGGATTCGCCGCGAGCTCGCCCTTCCAAAATCTCG
TGAGTTTGGAGTCGTGGACTTAGAGGCGAAATGTACTGCGGATGAGGAGA
TTTTGCCGGATACTAAACGTCAGAAAACAACACAGGAAGAAAGCAACGAT
GCTGAAGTAGAATATGTGGAGGAAGAGAATGGCGAAGAAACCCATTTTGA
TGAGTGCTTTAAGCCTTTCTATTCCTTTGGGATGTGGGAAGAGGCAAAGA
CGGGAACAAAACGTCTCTCGGTAGCTATTCTGCTCTTTTCTGGGGTAACA
GCGGATGATTTTACAGTGCATGTACTTCCTGGTGGAAGGGTCTTGGAGAT
GAGATGTGCTTGGCCGTGGGTATTCACTGACGTCAATGTGTTGCATCGTC
GTTGGTTTAATCTAGAGAATGGGCAACAAATTACAGATTACCATCCTAAG
CTCAATGCTTTCGAATTGTTCTACCGCAATCTGCGAGAACGCAGTTCTGA
TGAGGTGTATGCAGTGTCGCGTATTCGTCTACCATTTATTGTTGAGACTC
ATATCCTGGAGTCTCATTTGTTAGGTTGGCGAGAGAGCGAAGCGAAGGGA
GTTTACGTAGAGCTTCGTTCTCTTCGAGAGCAATACGCAATTACCAATGA
AAAGAAAGAATTTCGAATTTATTGA
back to top

protein sequence of Ggra6447.t1

>Ggra6447.t1 ID=Ggra6447.t1|Name=Ggra6447.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=275bp
MSPPGRLTSKSKAVQHLRTLLSSGKLSGEEDPSFVHKADPVFTPYKLDNF
RSAYNRIRRELALPKSREFGVVDLEAKCTADEEILPDTKRQKTTQEESND
AEVEYVEEENGEETHFDECFKPFYSFGMWEEAKTGTKRLSVAILLFSGVT
ADDFTVHVLPGGRVLEMRCAWPWVFTDVNVLHRRWFNLENGQQITDYHPK
LNAFELFYRNLRERSSDEVYAVSRIRLPFIVETHILESHLLGWRESEAKG
VYVELRSLREQYAITNEKKEFRIY*
back to top

mRNA from alignment at tig00000074_pilon:75761..76637+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6447.t1 ID=Ggra6447.t1|Name=Ggra6447.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=877bp|location=Sequence derived from alignment at tig00000074_pilon:75761..76637+ (Gracilaria gracilis GNS1m male)
ATGTCCCCACCAGGGAGGCTCACGTCGAAGTCCAAAGCTGTCCAGCACCT
GCGCACTCTACTATCTTCCGGAAAGTTGTCAGGGGAAGAGGATCCGAGCT
TTGTACATAAGGCAGATCCCGTCTTTACCCCTTATAAACTGGACAATTTT
CGCTCCGCCTACAACCGGATTCGCCGCGAGCTCGCCCTTCCAAAATGTAA
GTCTTCTCACTTCTTTGCTTTACTTTGTCCTATTCTGACATCATCCAGCT
CGTGAGTTTGGAGTCGTGGACTTAGAGGCGAAATGTACTGCGGATGAGGA
GATTTTGCCGGATACTAAACGTCAGAAAACAACACAGGAAGAAAGCAACG
ATGCTGAAGTAGAATATGTGGAGGAAGAGAATGGCGAAGAAACCCATTTT
GATGAGTGCTTTAAGCCTTTCTATTCCTTTGGGATGTGGGAAGAGGCAAA
GACGGGAACAAAACGTCTCTCGGTAGCTATTCTGCTCTTTTCTGGGGTAA
CAGCGGATGATTTTACAGTGCATGTACTTCCTGGTGGAAGGGTCTTGGAG
ATGAGATGTGCTTGGCCGTGGGTATTCACTGACGTCAATGTGTTGCATCG
TCGTTGGTTTAATCTAGAGAATGGGCAACAAATTACAGATTACCATCCTA
AGCTCAATGCTTTCGAATTGTTCTACCGCAATCTGCGAGAACGCAGTTCT
GATGAGGTGTATGCAGTGTCGCGTATTCGTCTACCATTTATTGTTGAGAC
TCATATCCTGGAGTCTCATTTGTTAGGTTGGCGAGAGAGCGAAGCGAAGG
GAGTTTACGTAGAGCTTCGTTCTCTTCGAGAGCAATACGCAATTACCAAT
GAAAAGAAAGAATTTCGAATTTATTGA
back to top

Coding sequence (CDS) from alignment at tig00000074_pilon:75761..76637+

>Ggra6447.t1 ID=Ggra6447.t1|Name=Ggra6447.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=825bp|location=Sequence derived from alignment at tig00000074_pilon:75761..76637+ (Gracilaria gracilis GNS1m male)
ATGTCCCCACCAGGGAGGCTCACGTCGAAGTCCAAAGCTGTCCAGCACCT
GCGCACTCTACTATCTTCCGGAAAGTTGTCAGGGGAAGAGGATCCGAGCT
TTGTACATAAGGCAGATCCCGTCTTTACCCCTTATAAACTGGACAATTTT
CGCTCCGCCTACAACCGGATTCGCCGCGAGCTCGCCCTTCCAAAATCTCG
TGAGTTTGGAGTCGTGGACTTAGAGGCGAAATGTACTGCGGATGAGGAGA
TTTTGCCGGATACTAAACGTCAGAAAACAACACAGGAAGAAAGCAACGAT
GCTGAAGTAGAATATGTGGAGGAAGAGAATGGCGAAGAAACCCATTTTGA
TGAGTGCTTTAAGCCTTTCTATTCCTTTGGGATGTGGGAAGAGGCAAAGA
CGGGAACAAAACGTCTCTCGGTAGCTATTCTGCTCTTTTCTGGGGTAACA
GCGGATGATTTTACAGTGCATGTACTTCCTGGTGGAAGGGTCTTGGAGAT
GAGATGTGCTTGGCCGTGGGTATTCACTGACGTCAATGTGTTGCATCGTC
GTTGGTTTAATCTAGAGAATGGGCAACAAATTACAGATTACCATCCTAAG
CTCAATGCTTTCGAATTGTTCTACCGCAATCTGCGAGAACGCAGTTCTGA
TGAGGTGTATGCAGTGTCGCGTATTCGTCTACCATTTATTGTTGAGACTC
ATATCCTGGAGTCTCATTTGTTAGGTTGGCGAGAGAGCGAAGCGAAGGGA
GTTTACGTAGAGCTTCGTTCTCTTCGAGAGCAATACGCAATTACCAATGA
AAAGAAAGAATTTCGAATTTATTGA
back to top