Ggra6442.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6442.t1
Unique NameGgra6442.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length277
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:44697..45676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28564.XP_002340586.1
PFAMsPkinase
Max annot lvl4751|Fungi
Evalue8.86e-40
EggNOG OGs2AGKR@1|root,2RZ04@2759|Eukaryota,3A17F@33154|Opisthokonta,3P2CN@4751|Fungi,3R475@4890|Ascomycota,20S3P@147545|Eurotiomycetes,3SCXH@5042|Eurotiales
DescriptionLipopolysaccharide kinase (Kdo/WaaP) family
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6442Ggra6442Gracilaria gracilis GNS1m malegenetig00000074_pilon 44697..45676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6442.t1Ggra6442.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 44697..45676 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6442.t1.start1Ggra6442.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 44697..44699 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6442.t1.CDS1Ggra6442.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 44697..44816 +
Ggra6442.t1.CDS2Ggra6442.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000074_pilon 44897..44989 +
Ggra6442.t1.CDS3Ggra6442.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000074_pilon 45059..45676 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6442.t1.exon1Ggra6442.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 44697..44816 +
Ggra6442.t1.exon2Ggra6442.t1.exon2Gracilaria gracilis GNS1m maleexontig00000074_pilon 44897..44989 +
Ggra6442.t1.exon3Ggra6442.t1.exon3Gracilaria gracilis GNS1m maleexontig00000074_pilon 45059..45676 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6442.t1.intron1Ggra6442.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000074_pilon 44817..44896 +
Ggra6442.t1.intron2Ggra6442.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000074_pilon 44990..45058 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6442.t1.stop1Ggra6442.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 45674..45676 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6442.t1 ID=Ggra6442.t1|Name=Ggra6442.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=277bp
MSGAGKDLKFTGYNGTRFHFSGEGGKFPLEAVHAHGEELQAKPEAIMLKI
AEKAELFSIGDNGPKFEHTTVIAKSEKLDGFQLSSELLFPSVDKIAFTKA
TCLAPKHCYSKVPSLLHCQPGSDVVKKLLLQEACVMESLKKRQHPNIVRY
HGYIERKNQLRGFCLEKLSETLSDRVKRLGGDLSNDQCLKGIQEGIEHLH
NMGYAHNDINPANIMFKEDGTPVIIDFDSCLPIGQTLGPKVGTPFFFDEK
ATHSLAENDFYGLRKLMKYIEDHTGC*
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spliced messenger RNA

>Ggra6442.t1 ID=Ggra6442.t1|Name=Ggra6442.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=831bp|location=Sequence derived from alignment at tig00000074_pilon:44697..45676+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGGTGCCGGGAAAGATCTAAAGTTTACTGGGTACAACGGTACACG
ATTTCATTTCAGTGGTGAAGGTGGAAAGTTTCCACTGGAAGCCGTTCATG
CTCATGGAGAAGAACTCCAGGCAAAACCCGAAGCCATCATGTTAAAAATA
GCTGAGAAAGCAGAATTGTTCTCGATTGGAGATAATGGTCCGAAGTTCGA
GCATACCACTGTGATAGCTAAGTCTGAGAAACTAGATGGATTTCAACTCT
CATCGGAATTATTGTTTCCCAGCGTGGACAAAATCGCGTTTACAAAGGCG
ACATGTCTTGCACCGAAGCATTGCTATTCGAAAGTACCCAGTCTACTGCA
TTGTCAGCCTGGGAGTGACGTCGTTAAAAAGCTGTTGCTCCAAGAAGCTT
GCGTCATGGAATCGTTGAAAAAGCGCCAGCATCCGAATATAGTAAGATAT
CATGGATATATTGAGCGAAAAAACCAATTGCGGGGGTTCTGTCTCGAAAA
GCTCTCAGAAACCCTTTCGGATAGAGTTAAGCGCTTAGGTGGGGATCTCA
GCAATGATCAGTGCTTAAAGGGAATTCAAGAAGGGATTGAACACCTTCAC
AACATGGGATATGCGCACAATGACATTAATCCCGCCAACATTATGTTTAA
AGAAGATGGAACCCCTGTAATCATCGATTTCGATTCTTGTTTACCAATTG
GTCAAACGCTAGGACCCAAAGTCGGGACACCTTTTTTCTTTGACGAAAAA
GCAACCCATTCATTAGCGGAGAATGACTTCTACGGTCTCCGTAAACTGAT
GAAGTATATCGAAGACCACACAGGTTGTTGA
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protein sequence of Ggra6442.t1

>Ggra6442.t1 ID=Ggra6442.t1|Name=Ggra6442.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=277bp
MSGAGKDLKFTGYNGTRFHFSGEGGKFPLEAVHAHGEELQAKPEAIMLKI
AEKAELFSIGDNGPKFEHTTVIAKSEKLDGFQLSSELLFPSVDKIAFTKA
TCLAPKHCYSKVPSLLHCQPGSDVVKKLLLQEACVMESLKKRQHPNIVRY
HGYIERKNQLRGFCLEKLSETLSDRVKRLGGDLSNDQCLKGIQEGIEHLH
NMGYAHNDINPANIMFKEDGTPVIIDFDSCLPIGQTLGPKVGTPFFFDEK
ATHSLAENDFYGLRKLMKYIEDHTGC*
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mRNA from alignment at tig00000074_pilon:44697..45676+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6442.t1 ID=Ggra6442.t1|Name=Ggra6442.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=980bp|location=Sequence derived from alignment at tig00000074_pilon:44697..45676+ (Gracilaria gracilis GNS1m male)
ATGTCAGGTGCCGGGAAAGATCTAAAGTTTACTGGGTACAACGGTACACG
ATTTCATTTCAGTGGTGAAGGTGGAAAGTTTCCACTGGAAGCCGTTCATG
CTCATGGAGAAGAACTCCAGGTACGACGGTACCAACGATACCAAAAAGGT
ATTCCCAACCGCCGAGAGCTGCAACCTGTAGTATCTAATCAAACCTCCAG
GCAAAACCCGAAGCCATCATGTTAAAAATAGCTGAGAAAGCAGAATTGTT
CTCGATTGGAGATAATGGTCCGAAGTTCGAGCATACCACTGTGGTATGTG
AGGACGCGGGTTAGTATTTTGTCGCCTCCATGAACTGCCGCCTTCGCAAT
GTTCCAGATCAGATAGCTAAGTCTGAGAAACTAGATGGATTTCAACTCTC
ATCGGAATTATTGTTTCCCAGCGTGGACAAAATCGCGTTTACAAAGGCGA
CATGTCTTGCACCGAAGCATTGCTATTCGAAAGTACCCAGTCTACTGCAT
TGTCAGCCTGGGAGTGACGTCGTTAAAAAGCTGTTGCTCCAAGAAGCTTG
CGTCATGGAATCGTTGAAAAAGCGCCAGCATCCGAATATAGTAAGATATC
ATGGATATATTGAGCGAAAAAACCAATTGCGGGGGTTCTGTCTCGAAAAG
CTCTCAGAAACCCTTTCGGATAGAGTTAAGCGCTTAGGTGGGGATCTCAG
CAATGATCAGTGCTTAAAGGGAATTCAAGAAGGGATTGAACACCTTCACA
ACATGGGATATGCGCACAATGACATTAATCCCGCCAACATTATGTTTAAA
GAAGATGGAACCCCTGTAATCATCGATTTCGATTCTTGTTTACCAATTGG
TCAAACGCTAGGACCCAAAGTCGGGACACCTTTTTTCTTTGACGAAAAAG
CAACCCATTCATTAGCGGAGAATGACTTCTACGGTCTCCGTAAACTGATG
AAGTATATCGAAGACCACACAGGTTGTTGA
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Coding sequence (CDS) from alignment at tig00000074_pilon:44697..45676+

>Ggra6442.t1 ID=Ggra6442.t1|Name=Ggra6442.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=831bp|location=Sequence derived from alignment at tig00000074_pilon:44697..45676+ (Gracilaria gracilis GNS1m male)
ATGTCAGGTGCCGGGAAAGATCTAAAGTTTACTGGGTACAACGGTACACG
ATTTCATTTCAGTGGTGAAGGTGGAAAGTTTCCACTGGAAGCCGTTCATG
CTCATGGAGAAGAACTCCAGGCAAAACCCGAAGCCATCATGTTAAAAATA
GCTGAGAAAGCAGAATTGTTCTCGATTGGAGATAATGGTCCGAAGTTCGA
GCATACCACTGTGATAGCTAAGTCTGAGAAACTAGATGGATTTCAACTCT
CATCGGAATTATTGTTTCCCAGCGTGGACAAAATCGCGTTTACAAAGGCG
ACATGTCTTGCACCGAAGCATTGCTATTCGAAAGTACCCAGTCTACTGCA
TTGTCAGCCTGGGAGTGACGTCGTTAAAAAGCTGTTGCTCCAAGAAGCTT
GCGTCATGGAATCGTTGAAAAAGCGCCAGCATCCGAATATAGTAAGATAT
CATGGATATATTGAGCGAAAAAACCAATTGCGGGGGTTCTGTCTCGAAAA
GCTCTCAGAAACCCTTTCGGATAGAGTTAAGCGCTTAGGTGGGGATCTCA
GCAATGATCAGTGCTTAAAGGGAATTCAAGAAGGGATTGAACACCTTCAC
AACATGGGATATGCGCACAATGACATTAATCCCGCCAACATTATGTTTAA
AGAAGATGGAACCCCTGTAATCATCGATTTCGATTCTTGTTTACCAATTG
GTCAAACGCTAGGACCCAAAGTCGGGACACCTTTTTTCTTTGACGAAAAA
GCAACCCATTCATTAGCGGAGAATGACTTCTACGGTCTCCGTAAACTGAT
GAAGTATATCGAAGACCACACAGGTTGTTGA
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