Ggra6441.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6441.t1
Unique Name	Ggra6441.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	544

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000074_pilon	contig	tig00000074_pilon:42616..44247 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1453501.JELR01000002_gene98
Max annot lvl	1236\|Gammaproteobacteria
Evalue	8.33e-70
EggNOG OGs	COG2931@1\|root,COG2931@2\|Bacteria,1QX4P@1224\|Proteobacteria,1T5MB@1236\|Gammaproteobacteria
Description	calcium- and calmodulin-responsive adenylate cyclase activity
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6441	Ggra6441	Gracilaria gracilis GNS1m male	gene	tig00000074_pilon 42616..44247 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6441.t1.start1	Ggra6441.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000074_pilon 42616..42618 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6441.t1.CDS1	Ggra6441.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000074_pilon 42616..44247 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6441.t1.exon1	Ggra6441.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000074_pilon 42616..44247 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6441.t1.stop1	Ggra6441.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000074_pilon 44245..44247 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6441.t1	Ggra6441.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000074_pilon 42616..44247 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000074_pilon:42616..44247+
coding sequence from alignment at tig00000074_pilon:42616..44247+

mRNA sequence

>Ggra6441.t1 ID=Ggra6441.t1|Name=Ggra6441.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=544bp
MGTPPVTFPTSTNMSTDFAFILALFCAVQVWVALAQPSQNTLERESQAYT
FDLFPNVFNAITTDGLETPLQIRAFFYLNLAVFNAWSNYHPTAVDIFGRS
CFKRPTTEHTIENKNIAIYYSLFRLYQASPPSFGGDLGIPNFRERMLEQG
LDPDDMSLDMTTPVGIGNREGIDTGRLLLMDRWNANGSLSSSDPAYSLPL
ADYTGYTPVNTPSKINFPFRWQPVLESNGVGFFFRQEHVTPYAGQAIAFS
QTPEQIERRKVSSPYRDPDVSLEEATRKDLRKLRKYARDVLKRSAKLTQR
QRLLAELFDNKVFAFRTPENPFGSPSIAAAVRFFIFGPRFDLSFDEDVIY
GLASNIVTFDATMAVWKEKVRHDAIRPTGQTMELLLGEDLAQVWGGPGRD
TTRILPKDWQPLIRTMPHSEFPSGSACVCEAFIEQALIFTKGRDEFPYNV
TFVKGSSKFYPGSVPAENVTIPINRLSEWSRLCGESRLWAGVHFEPSVSA
GQRLCKGLGAAAQDVVEKLVRGEPVLTWMKWLGDDIERFWESN*

spliced messenger RNA

>Ggra6441.t1 ID=Ggra6441.t1|Name=Ggra6441.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1632bp|location=Sequence derived from alignment at tig00000074_pilon:42616..44247+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCACCCCACCAGTCACTTTCCCGACTTCTACCAACATGAGCACCGA
CTTCGCTTTTATCCTTGCGCTTTTCTGTGCTGTTCAGGTCTGGGTCGCTC
TTGCCCAACCCTCACAGAATACACTTGAACGTGAAAGCCAGGCGTACACC
TTTGATCTGTTCCCCAATGTCTTCAACGCCATTACCACGGATGGACTTGA
AACCCCACTTCAGATACGAGCATTCTTTTATCTCAACCTCGCCGTCTTTA
ACGCCTGGAGTAATTATCATCCCACCGCTGTGGATATTTTTGGTCGCTCT
TGCTTTAAGCGTCCCACCACCGAACACACAATCGAAAACAAGAACATTGC
CATCTACTACTCCTTGTTTCGTCTGTACCAAGCTTCGCCTCCCAGTTTTG
GTGGCGATTTGGGCATTCCAAACTTCCGTGAGCGAATGCTAGAGCAAGGA
TTGGACCCGGATGACATGAGCCTTGACATGACCACGCCGGTCGGTATTGG
AAACCGAGAGGGTATTGATACAGGCCGTCTGCTGTTGATGGATAGATGGA
ACGCCAATGGTTCACTCAGTTCCTCTGACCCGGCTTATTCACTTCCTCTA
GCCGATTACACAGGATACACACCGGTTAACACGCCGTCGAAAATCAATTT
CCCTTTCCGTTGGCAGCCTGTGCTCGAATCGAATGGTGTTGGGTTTTTCT
TCCGCCAGGAGCATGTAACTCCATATGCGGGTCAGGCTATAGCGTTCAGC
CAAACGCCCGAGCAGATCGAACGTCGTAAGGTGTCGTCACCGTATCGTGA
TCCTGATGTATCTTTAGAGGAAGCCACCAGGAAGGATTTGCGCAAACTGC
GTAAATATGCTCGTGATGTACTCAAGCGATCTGCAAAGCTGACGCAGAGG
CAAAGACTGTTAGCTGAACTGTTTGATAATAAGGTTTTTGCGTTCCGTAC
CCCCGAGAATCCGTTTGGTTCTCCGAGTATCGCCGCCGCAGTACGCTTCT
TCATTTTCGGACCGAGATTTGACCTTTCGTTTGACGAGGATGTTATTTAC
GGACTGGCGTCCAATATCGTCACCTTTGACGCAACGATGGCTGTCTGGAA
GGAAAAAGTTCGTCATGATGCGATCAGACCTACTGGCCAGACAATGGAAC
TGTTACTGGGAGAGGATTTGGCCCAGGTATGGGGAGGACCTGGTCGTGAC
ACTACGCGTATTCTCCCCAAGGATTGGCAGCCGTTAATACGGACTATGCC
CCACAGTGAATTTCCGTCGGGCTCCGCGTGTGTGTGCGAGGCTTTCATTG
AGCAGGCGCTCATCTTCACCAAAGGGCGAGATGAATTCCCATACAACGTG
ACATTCGTCAAGGGTTCGAGCAAATTCTATCCCGGCAGCGTTCCTGCCGA
GAATGTGACTATCCCGATTAACCGTCTTTCAGAATGGTCTCGTCTTTGCG
GTGAGTCAAGGCTTTGGGCAGGTGTTCACTTCGAACCATCTGTGTCAGCT
GGCCAGAGACTCTGTAAGGGGCTCGGAGCGGCCGCTCAAGATGTGGTCGA
GAAGTTAGTTCGTGGCGAACCGGTACTAACATGGATGAAGTGGCTCGGGG
ATGACATCGAAAGATTCTGGGAGAGCAATTGA

protein sequence of Ggra6441.t1

>Ggra6441.t1 ID=Ggra6441.t1|Name=Ggra6441.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=544bp
MGTPPVTFPTSTNMSTDFAFILALFCAVQVWVALAQPSQNTLERESQAYT
FDLFPNVFNAITTDGLETPLQIRAFFYLNLAVFNAWSNYHPTAVDIFGRS
CFKRPTTEHTIENKNIAIYYSLFRLYQASPPSFGGDLGIPNFRERMLEQG
LDPDDMSLDMTTPVGIGNREGIDTGRLLLMDRWNANGSLSSSDPAYSLPL
ADYTGYTPVNTPSKINFPFRWQPVLESNGVGFFFRQEHVTPYAGQAIAFS
QTPEQIERRKVSSPYRDPDVSLEEATRKDLRKLRKYARDVLKRSAKLTQR
QRLLAELFDNKVFAFRTPENPFGSPSIAAAVRFFIFGPRFDLSFDEDVIY
GLASNIVTFDATMAVWKEKVRHDAIRPTGQTMELLLGEDLAQVWGGPGRD
TTRILPKDWQPLIRTMPHSEFPSGSACVCEAFIEQALIFTKGRDEFPYNV
TFVKGSSKFYPGSVPAENVTIPINRLSEWSRLCGESRLWAGVHFEPSVSA
GQRLCKGLGAAAQDVVEKLVRGEPVLTWMKWLGDDIERFWESN*

mRNA from alignment at tig00000074_pilon:42616..44247+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6441.t1 ID=Ggra6441.t1|Name=Ggra6441.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1632bp|location=Sequence derived from alignment at tig00000074_pilon:42616..44247+ (Gracilaria gracilis GNS1m male)
ATGGGCACCCCACCAGTCACTTTCCCGACTTCTACCAACATGAGCACCGA
CTTCGCTTTTATCCTTGCGCTTTTCTGTGCTGTTCAGGTCTGGGTCGCTC
TTGCCCAACCCTCACAGAATACACTTGAACGTGAAAGCCAGGCGTACACC
TTTGATCTGTTCCCCAATGTCTTCAACGCCATTACCACGGATGGACTTGA
AACCCCACTTCAGATACGAGCATTCTTTTATCTCAACCTCGCCGTCTTTA
ACGCCTGGAGTAATTATCATCCCACCGCTGTGGATATTTTTGGTCGCTCT
TGCTTTAAGCGTCCCACCACCGAACACACAATCGAAAACAAGAACATTGC
CATCTACTACTCCTTGTTTCGTCTGTACCAAGCTTCGCCTCCCAGTTTTG
GTGGCGATTTGGGCATTCCAAACTTCCGTGAGCGAATGCTAGAGCAAGGA
TTGGACCCGGATGACATGAGCCTTGACATGACCACGCCGGTCGGTATTGG
AAACCGAGAGGGTATTGATACAGGCCGTCTGCTGTTGATGGATAGATGGA
ACGCCAATGGTTCACTCAGTTCCTCTGACCCGGCTTATTCACTTCCTCTA
GCCGATTACACAGGATACACACCGGTTAACACGCCGTCGAAAATCAATTT
CCCTTTCCGTTGGCAGCCTGTGCTCGAATCGAATGGTGTTGGGTTTTTCT
TCCGCCAGGAGCATGTAACTCCATATGCGGGTCAGGCTATAGCGTTCAGC
CAAACGCCCGAGCAGATCGAACGTCGTAAGGTGTCGTCACCGTATCGTGA
TCCTGATGTATCTTTAGAGGAAGCCACCAGGAAGGATTTGCGCAAACTGC
GTAAATATGCTCGTGATGTACTCAAGCGATCTGCAAAGCTGACGCAGAGG
CAAAGACTGTTAGCTGAACTGTTTGATAATAAGGTTTTTGCGTTCCGTAC
CCCCGAGAATCCGTTTGGTTCTCCGAGTATCGCCGCCGCAGTACGCTTCT
TCATTTTCGGACCGAGATTTGACCTTTCGTTTGACGAGGATGTTATTTAC
GGACTGGCGTCCAATATCGTCACCTTTGACGCAACGATGGCTGTCTGGAA
GGAAAAAGTTCGTCATGATGCGATCAGACCTACTGGCCAGACAATGGAAC
TGTTACTGGGAGAGGATTTGGCCCAGGTATGGGGAGGACCTGGTCGTGAC
ACTACGCGTATTCTCCCCAAGGATTGGCAGCCGTTAATACGGACTATGCC
CCACAGTGAATTTCCGTCGGGCTCCGCGTGTGTGTGCGAGGCTTTCATTG
AGCAGGCGCTCATCTTCACCAAAGGGCGAGATGAATTCCCATACAACGTG
ACATTCGTCAAGGGTTCGAGCAAATTCTATCCCGGCAGCGTTCCTGCCGA
GAATGTGACTATCCCGATTAACCGTCTTTCAGAATGGTCTCGTCTTTGCG
GTGAGTCAAGGCTTTGGGCAGGTGTTCACTTCGAACCATCTGTGTCAGCT
GGCCAGAGACTCTGTAAGGGGCTCGGAGCGGCCGCTCAAGATGTGGTCGA
GAAGTTAGTTCGTGGCGAACCGGTACTAACATGGATGAAGTGGCTCGGGG
ATGACATCGAAAGATTCTGGGAGAGCAATTGA

Coding sequence (CDS) from alignment at tig00000074_pilon:42616..44247+

>Ggra6441.t1 ID=Ggra6441.t1|Name=Ggra6441.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1632bp|location=Sequence derived from alignment at tig00000074_pilon:42616..44247+ (Gracilaria gracilis GNS1m male)
ATGGGCACCCCACCAGTCACTTTCCCGACTTCTACCAACATGAGCACCGA
CTTCGCTTTTATCCTTGCGCTTTTCTGTGCTGTTCAGGTCTGGGTCGCTC
TTGCCCAACCCTCACAGAATACACTTGAACGTGAAAGCCAGGCGTACACC
TTTGATCTGTTCCCCAATGTCTTCAACGCCATTACCACGGATGGACTTGA
AACCCCACTTCAGATACGAGCATTCTTTTATCTCAACCTCGCCGTCTTTA
ACGCCTGGAGTAATTATCATCCCACCGCTGTGGATATTTTTGGTCGCTCT
TGCTTTAAGCGTCCCACCACCGAACACACAATCGAAAACAAGAACATTGC
CATCTACTACTCCTTGTTTCGTCTGTACCAAGCTTCGCCTCCCAGTTTTG
GTGGCGATTTGGGCATTCCAAACTTCCGTGAGCGAATGCTAGAGCAAGGA
TTGGACCCGGATGACATGAGCCTTGACATGACCACGCCGGTCGGTATTGG
AAACCGAGAGGGTATTGATACAGGCCGTCTGCTGTTGATGGATAGATGGA
ACGCCAATGGTTCACTCAGTTCCTCTGACCCGGCTTATTCACTTCCTCTA
GCCGATTACACAGGATACACACCGGTTAACACGCCGTCGAAAATCAATTT
CCCTTTCCGTTGGCAGCCTGTGCTCGAATCGAATGGTGTTGGGTTTTTCT
TCCGCCAGGAGCATGTAACTCCATATGCGGGTCAGGCTATAGCGTTCAGC
CAAACGCCCGAGCAGATCGAACGTCGTAAGGTGTCGTCACCGTATCGTGA
TCCTGATGTATCTTTAGAGGAAGCCACCAGGAAGGATTTGCGCAAACTGC
GTAAATATGCTCGTGATGTACTCAAGCGATCTGCAAAGCTGACGCAGAGG
CAAAGACTGTTAGCTGAACTGTTTGATAATAAGGTTTTTGCGTTCCGTAC
CCCCGAGAATCCGTTTGGTTCTCCGAGTATCGCCGCCGCAGTACGCTTCT
TCATTTTCGGACCGAGATTTGACCTTTCGTTTGACGAGGATGTTATTTAC
GGACTGGCGTCCAATATCGTCACCTTTGACGCAACGATGGCTGTCTGGAA
GGAAAAAGTTCGTCATGATGCGATCAGACCTACTGGCCAGACAATGGAAC
TGTTACTGGGAGAGGATTTGGCCCAGGTATGGGGAGGACCTGGTCGTGAC
ACTACGCGTATTCTCCCCAAGGATTGGCAGCCGTTAATACGGACTATGCC
CCACAGTGAATTTCCGTCGGGCTCCGCGTGTGTGTGCGAGGCTTTCATTG
AGCAGGCGCTCATCTTCACCAAAGGGCGAGATGAATTCCCATACAACGTG
ACATTCGTCAAGGGTTCGAGCAAATTCTATCCCGGCAGCGTTCCTGCCGA
GAATGTGACTATCCCGATTAACCGTCTTTCAGAATGGTCTCGTCTTTGCG
GTGAGTCAAGGCTTTGGGCAGGTGTTCACTTCGAACCATCTGTGTCAGCT
GGCCAGAGACTCTGTAAGGGGCTCGGAGCGGCCGCTCAAGATGTGGTCGA
GAAGTTAGTTCGTGGCGAACCGGTACTAACATGGATGAAGTGGCTCGGGG
ATGACATCGAAAGATTCTGGGAGAGCAATTGA