Ggra6439.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6439.t1
Unique NameGgra6439.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length275
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:11566..12494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121385.AQXW01000004_gene1151
PFAMsAPH
Max annot lvl201174|Actinobacteria
Evalue2.86e-06
EggNOG OGsCOG3178@1|root,COG3178@2|Bacteria,2GNRB@201174|Actinobacteria,1ZWCB@145357|Dermacoccaceae
DescriptionPhosphotransferase enzyme family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6439Ggra6439Gracilaria gracilis GNS1m malegenetig00000074_pilon 11566..12494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6439.t1Ggra6439.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 11566..12494 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6439.t1.stop1Ggra6439.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 11566..11568 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6439.t1.CDS1Ggra6439.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 11566..11982 -
Ggra6439.t1.CDS2Ggra6439.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000074_pilon 12087..12494 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6439.t1.exon1Ggra6439.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 11566..11982 -
Ggra6439.t1.exon2Ggra6439.t1.exon2Gracilaria gracilis GNS1m maleexontig00000074_pilon 12087..12494 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6439.t1.intron1Ggra6439.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000074_pilon 11983..12086 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6439.t1.start1Ggra6439.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 12492..12494 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6439.t1 ID=Ggra6439.t1|Name=Ggra6439.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=275bp
MVDVNLTTTKYERTGCPEQVSFSFRSVIYRIPTTEGYVFLKVVPTESIQI
LYTMGIKRLFPSVTLSVIRSSLSQNMLLASDLGADLEELCFVPSHSTLMK
GYDKKSEIARKVFSEWARVQHVASNHVGELVGAGLPRIDMEDVFEQWSTL
SLPLTLIHGDLNAGNIAHPGDIGTQFIFFDWGSSFVGFPFLELLEKELYP
LFMHDHFYFYIQEWRKFCDDKRRPFDVTARTRPFSYLIRAIREVQLDIHP
LAIQKDVVTENVEGFCDAVERISG*
back to top

spliced messenger RNA

>Ggra6439.t1 ID=Ggra6439.t1|Name=Ggra6439.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=825bp|location=Sequence derived from alignment at tig00000074_pilon:11566..12494- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGATGTCAATCTCACCACAACCAAGTATGAAAGGACTGGTTGCCC
AGAACAAGTATCGTTTTCCTTCCGATCCGTTATCTACCGAATTCCAACAA
CTGAGGGATATGTGTTTCTCAAAGTGGTTCCCACAGAGAGTATTCAAATC
CTGTACACTATGGGAATTAAGAGGCTATTTCCTTCTGTTACCCTATCTGT
TATTCGTAGCAGTTTAAGTCAAAATATGCTACTCGCATCAGATCTAGGCG
CCGATCTGGAAGAACTCTGTTTTGTGCCGTCCCACTCAACTCTCATGAAG
GGCTATGACAAGAAAAGCGAAATCGCAAGAAAAGTATTTTCTGAATGGGC
TCGAGTGCAGCATGTCGCATCTAATCATGTTGGCGAACTTGTGGGGGCTG
GTTTACCCAGAATTGATATGGAAGACGTCTTTGAACAATGGAGCACCTTA
AGCTTGCCACTCACTTTGATTCATGGAGATTTGAATGCAGGCAACATTGC
TCATCCAGGTGATATTGGTACCCAGTTTATTTTCTTTGATTGGGGCTCTT
CGTTTGTTGGTTTCCCGTTCCTGGAACTACTAGAGAAAGAATTATATCCA
CTGTTTATGCATGACCATTTCTATTTCTATATTCAAGAGTGGAGAAAGTT
CTGTGACGACAAAAGACGGCCTTTCGATGTCACAGCGAGAACAAGACCCT
TCAGTTATCTTATCAGAGCAATTCGAGAAGTACAACTGGATATCCATCCG
CTCGCAATCCAAAAGGATGTCGTCACGGAGAACGTTGAAGGATTTTGTGA
TGCTGTTGAACGTATCTCAGGTTGA
back to top

protein sequence of Ggra6439.t1

>Ggra6439.t1 ID=Ggra6439.t1|Name=Ggra6439.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=275bp
MVDVNLTTTKYERTGCPEQVSFSFRSVIYRIPTTEGYVFLKVVPTESIQI
LYTMGIKRLFPSVTLSVIRSSLSQNMLLASDLGADLEELCFVPSHSTLMK
GYDKKSEIARKVFSEWARVQHVASNHVGELVGAGLPRIDMEDVFEQWSTL
SLPLTLIHGDLNAGNIAHPGDIGTQFIFFDWGSSFVGFPFLELLEKELYP
LFMHDHFYFYIQEWRKFCDDKRRPFDVTARTRPFSYLIRAIREVQLDIHP
LAIQKDVVTENVEGFCDAVERISG*
back to top

mRNA from alignment at tig00000074_pilon:11566..12494-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6439.t1 ID=Ggra6439.t1|Name=Ggra6439.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=929bp|location=Sequence derived from alignment at tig00000074_pilon:11566..12494- (Gracilaria gracilis GNS1m male)
ATGGTTGATGTCAATCTCACCACAACCAAGTATGAAAGGACTGGTTGCCC
AGAACAAGTATCGTTTTCCTTCCGATCCGTTATCTACCGAATTCCAACAA
CTGAGGGATATGTGTTTCTCAAAGTGGTTCCCACAGAGAGTATTCAAATC
CTGTACACTATGGGAATTAAGAGGCTATTTCCTTCTGTTACCCTATCTGT
TATTCGTAGCAGTTTAAGTCAAAATATGCTACTCGCATCAGATCTAGGCG
CCGATCTGGAAGAACTCTGTTTTGTGCCGTCCCACTCAACTCTCATGAAG
GGCTATGACAAGAAAAGCGAAATCGCAAGAAAAGTATTTTCTGAATGGGC
TCGAGTGCAGCATGTCGCATCTAATCATGTTGGCGAACTTGTGGGGGCTG
GTTTACCCGTTTGTGATGCAACTGGATACGTGTCGGATACAAAGATGTCC
TATTCTTTGGTATTCGCCATCATTTGTTTTCGCCGGTTCTTGAATCGCGC
TTTAAAGCACAGAGAATTGATATGGAAGACGTCTTTGAACAATGGAGCAC
CTTAAGCTTGCCACTCACTTTGATTCATGGAGATTTGAATGCAGGCAACA
TTGCTCATCCAGGTGATATTGGTACCCAGTTTATTTTCTTTGATTGGGGC
TCTTCGTTTGTTGGTTTCCCGTTCCTGGAACTACTAGAGAAAGAATTATA
TCCACTGTTTATGCATGACCATTTCTATTTCTATATTCAAGAGTGGAGAA
AGTTCTGTGACGACAAAAGACGGCCTTTCGATGTCACAGCGAGAACAAGA
CCCTTCAGTTATCTTATCAGAGCAATTCGAGAAGTACAACTGGATATCCA
TCCGCTCGCAATCCAAAAGGATGTCGTCACGGAGAACGTTGAAGGATTTT
GTGATGCTGTTGAACGTATCTCAGGTTGA
back to top

Coding sequence (CDS) from alignment at tig00000074_pilon:11566..12494-

>Ggra6439.t1 ID=Ggra6439.t1|Name=Ggra6439.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=825bp|location=Sequence derived from alignment at tig00000074_pilon:11566..12494- (Gracilaria gracilis GNS1m male)
ATGGTTGATGTCAATCTCACCACAACCAAGTATGAAAGGACTGGTTGCCC
AGAACAAGTATCGTTTTCCTTCCGATCCGTTATCTACCGAATTCCAACAA
CTGAGGGATATGTGTTTCTCAAAGTGGTTCCCACAGAGAGTATTCAAATC
CTGTACACTATGGGAATTAAGAGGCTATTTCCTTCTGTTACCCTATCTGT
TATTCGTAGCAGTTTAAGTCAAAATATGCTACTCGCATCAGATCTAGGCG
CCGATCTGGAAGAACTCTGTTTTGTGCCGTCCCACTCAACTCTCATGAAG
GGCTATGACAAGAAAAGCGAAATCGCAAGAAAAGTATTTTCTGAATGGGC
TCGAGTGCAGCATGTCGCATCTAATCATGTTGGCGAACTTGTGGGGGCTG
GTTTACCCAGAATTGATATGGAAGACGTCTTTGAACAATGGAGCACCTTA
AGCTTGCCACTCACTTTGATTCATGGAGATTTGAATGCAGGCAACATTGC
TCATCCAGGTGATATTGGTACCCAGTTTATTTTCTTTGATTGGGGCTCTT
CGTTTGTTGGTTTCCCGTTCCTGGAACTACTAGAGAAAGAATTATATCCA
CTGTTTATGCATGACCATTTCTATTTCTATATTCAAGAGTGGAGAAAGTT
CTGTGACGACAAAAGACGGCCTTTCGATGTCACAGCGAGAACAAGACCCT
TCAGTTATCTTATCAGAGCAATTCGAGAAGTACAACTGGATATCCATCCG
CTCGCAATCCAAAAGGATGTCGTCACGGAGAACGTTGAAGGATTTTGTGA
TGCTGTTGAACGTATCTCAGGTTGA
back to top