Ggra6437.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6437.t1
Unique Name	Ggra6437.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	385

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000074_pilon	contig	tig00000074_pilon:6060..7214 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6437	Ggra6437	Gracilaria gracilis GNS1m male	gene	tig00000074_pilon 6060..7214 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6437.t1.start1	Ggra6437.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000074_pilon 6060..6062 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6437.t1.CDS1	Ggra6437.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000074_pilon 6060..7214 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6437.t1.exon1	Ggra6437.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000074_pilon 6060..7214 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6437.t1.stop1	Ggra6437.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000074_pilon 7212..7214 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6437.t1	Ggra6437.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000074_pilon 6060..7214 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000074_pilon:6060..7214+
coding sequence from alignment at tig00000074_pilon:6060..7214+

mRNA sequence

>Ggra6437.t1 ID=Ggra6437.t1|Name=Ggra6437.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=385bp
MKEPDSGIDGKNEELGNRVELRECIAGRNYEGSESESCLKDLSRKRKVKH
LLPRMPRIRKTRQPRSRGNARDEMKRRMKQIDESPNNHSNYNVRRSKSPI
SGYIGRESITTQSDSDYEYRRGERPELFENDVRSVQKNNRRKAQRLRRTP
YNRLRDEDDSSRHYSGTESDSEEESDAISPKQNAKMKNVSKTRIRCNAEV
GRVLIAKKAWLACLKKLKRSKPDIFTSPEAKLQKIVKASRGVSAYEKIGV
TVANCRSLSRVIDFYFDSEIVIDEGWEREMKSLTTSVSQFLRWCVAASCC
RKEDVWKAESLFVGISDLELVETFVSFFDRCCERRTLKNQISHSILVLQV
GSHSEDCGDLKLEMRTVMRHLKSRNGYLPSGNRE*

spliced messenger RNA

>Ggra6437.t1 ID=Ggra6437.t1|Name=Ggra6437.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1155bp|location=Sequence derived from alignment at tig00000074_pilon:6060..7214+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGAACCCGACAGCGGGATTGATGGAAAGAATGAAGAATTAGGAAA
TAGGGTGGAGTTGAGAGAATGTATCGCGGGCAGAAATTATGAAGGGTCTG
AATCTGAAAGCTGCTTGAAAGATTTAAGTCGTAAGAGAAAAGTGAAACAT
CTGCTGCCGCGGATGCCCCGCATCAGGAAAACACGCCAACCCCGCAGCAG
AGGCAATGCTAGGGATGAAATGAAGCGAAGAATGAAGCAAATAGATGAAT
CGCCCAATAATCATAGTAACTACAATGTGCGTCGTTCTAAATCACCCATA
TCGGGATATATCGGAAGGGAGAGTATTACAACCCAAAGCGATTCTGATTA
TGAATATCGACGTGGAGAAAGGCCAGAGTTGTTCGAGAACGATGTCAGAT
CCGTACAGAAGAACAATCGTCGCAAGGCCCAGCGCCTAAGGCGGACTCCG
TACAACAGACTAAGAGACGAAGACGACAGCAGTCGTCATTACAGTGGGAC
AGAAAGTGATTCGGAGGAAGAATCTGATGCAATAAGCCCAAAACAAAATG
CAAAGATGAAGAACGTATCGAAGACCAGGATTAGGTGCAATGCCGAAGTT
GGCAGAGTCCTCATTGCGAAAAAGGCATGGCTGGCCTGTTTGAAAAAGCT
CAAACGTTCGAAACCAGACATATTCACAAGCCCGGAAGCGAAACTCCAGA
AGATTGTGAAAGCGTCAAGAGGAGTTTCTGCTTACGAAAAAATTGGAGTT
ACGGTGGCCAACTGCCGTTCGCTGAGCAGGGTAATTGATTTCTATTTTGA
CTCCGAGATTGTAATCGATGAAGGATGGGAAAGAGAAATGAAGTCCCTCA
CTACTTCTGTTTCTCAATTCTTGCGTTGGTGCGTAGCGGCTTCATGTTGT
CGAAAGGAAGATGTATGGAAGGCCGAGTCTTTGTTCGTAGGTATCAGTGA
CTTGGAACTTGTGGAAACGTTTGTTTCTTTCTTTGATCGATGTTGCGAGC
GCAGGACGTTGAAGAACCAAATATCGCACTCGATTCTTGTTCTTCAGGTT
GGTTCTCATTCCGAAGACTGCGGCGACTTGAAGTTGGAAATGCGAACGGT
AATGCGACATTTAAAGAGCAGAAATGGATACCTACCCAGCGGCAATAGAG
AGTAG

protein sequence of Ggra6437.t1

>Ggra6437.t1 ID=Ggra6437.t1|Name=Ggra6437.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=385bp
MKEPDSGIDGKNEELGNRVELRECIAGRNYEGSESESCLKDLSRKRKVKH
LLPRMPRIRKTRQPRSRGNARDEMKRRMKQIDESPNNHSNYNVRRSKSPI
SGYIGRESITTQSDSDYEYRRGERPELFENDVRSVQKNNRRKAQRLRRTP
YNRLRDEDDSSRHYSGTESDSEEESDAISPKQNAKMKNVSKTRIRCNAEV
GRVLIAKKAWLACLKKLKRSKPDIFTSPEAKLQKIVKASRGVSAYEKIGV
TVANCRSLSRVIDFYFDSEIVIDEGWEREMKSLTTSVSQFLRWCVAASCC
RKEDVWKAESLFVGISDLELVETFVSFFDRCCERRTLKNQISHSILVLQV
GSHSEDCGDLKLEMRTVMRHLKSRNGYLPSGNRE*

mRNA from alignment at tig00000074_pilon:6060..7214+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6437.t1 ID=Ggra6437.t1|Name=Ggra6437.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1155bp|location=Sequence derived from alignment at tig00000074_pilon:6060..7214+ (Gracilaria gracilis GNS1m male)
ATGAAAGAACCCGACAGCGGGATTGATGGAAAGAATGAAGAATTAGGAAA
TAGGGTGGAGTTGAGAGAATGTATCGCGGGCAGAAATTATGAAGGGTCTG
AATCTGAAAGCTGCTTGAAAGATTTAAGTCGTAAGAGAAAAGTGAAACAT
CTGCTGCCGCGGATGCCCCGCATCAGGAAAACACGCCAACCCCGCAGCAG
AGGCAATGCTAGGGATGAAATGAAGCGAAGAATGAAGCAAATAGATGAAT
CGCCCAATAATCATAGTAACTACAATGTGCGTCGTTCTAAATCACCCATA
TCGGGATATATCGGAAGGGAGAGTATTACAACCCAAAGCGATTCTGATTA
TGAATATCGACGTGGAGAAAGGCCAGAGTTGTTCGAGAACGATGTCAGAT
CCGTACAGAAGAACAATCGTCGCAAGGCCCAGCGCCTAAGGCGGACTCCG
TACAACAGACTAAGAGACGAAGACGACAGCAGTCGTCATTACAGTGGGAC
AGAAAGTGATTCGGAGGAAGAATCTGATGCAATAAGCCCAAAACAAAATG
CAAAGATGAAGAACGTATCGAAGACCAGGATTAGGTGCAATGCCGAAGTT
GGCAGAGTCCTCATTGCGAAAAAGGCATGGCTGGCCTGTTTGAAAAAGCT
CAAACGTTCGAAACCAGACATATTCACAAGCCCGGAAGCGAAACTCCAGA
AGATTGTGAAAGCGTCAAGAGGAGTTTCTGCTTACGAAAAAATTGGAGTT
ACGGTGGCCAACTGCCGTTCGCTGAGCAGGGTAATTGATTTCTATTTTGA
CTCCGAGATTGTAATCGATGAAGGATGGGAAAGAGAAATGAAGTCCCTCA
CTACTTCTGTTTCTCAATTCTTGCGTTGGTGCGTAGCGGCTTCATGTTGT
CGAAAGGAAGATGTATGGAAGGCCGAGTCTTTGTTCGTAGGTATCAGTGA
CTTGGAACTTGTGGAAACGTTTGTTTCTTTCTTTGATCGATGTTGCGAGC
GCAGGACGTTGAAGAACCAAATATCGCACTCGATTCTTGTTCTTCAGGTT
GGTTCTCATTCCGAAGACTGCGGCGACTTGAAGTTGGAAATGCGAACGGT
AATGCGACATTTAAAGAGCAGAAATGGATACCTACCCAGCGGCAATAGAG
AGTAG

Coding sequence (CDS) from alignment at tig00000074_pilon:6060..7214+

>Ggra6437.t1 ID=Ggra6437.t1|Name=Ggra6437.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1155bp|location=Sequence derived from alignment at tig00000074_pilon:6060..7214+ (Gracilaria gracilis GNS1m male)
ATGAAAGAACCCGACAGCGGGATTGATGGAAAGAATGAAGAATTAGGAAA
TAGGGTGGAGTTGAGAGAATGTATCGCGGGCAGAAATTATGAAGGGTCTG
AATCTGAAAGCTGCTTGAAAGATTTAAGTCGTAAGAGAAAAGTGAAACAT
CTGCTGCCGCGGATGCCCCGCATCAGGAAAACACGCCAACCCCGCAGCAG
AGGCAATGCTAGGGATGAAATGAAGCGAAGAATGAAGCAAATAGATGAAT
CGCCCAATAATCATAGTAACTACAATGTGCGTCGTTCTAAATCACCCATA
TCGGGATATATCGGAAGGGAGAGTATTACAACCCAAAGCGATTCTGATTA
TGAATATCGACGTGGAGAAAGGCCAGAGTTGTTCGAGAACGATGTCAGAT
CCGTACAGAAGAACAATCGTCGCAAGGCCCAGCGCCTAAGGCGGACTCCG
TACAACAGACTAAGAGACGAAGACGACAGCAGTCGTCATTACAGTGGGAC
AGAAAGTGATTCGGAGGAAGAATCTGATGCAATAAGCCCAAAACAAAATG
CAAAGATGAAGAACGTATCGAAGACCAGGATTAGGTGCAATGCCGAAGTT
GGCAGAGTCCTCATTGCGAAAAAGGCATGGCTGGCCTGTTTGAAAAAGCT
CAAACGTTCGAAACCAGACATATTCACAAGCCCGGAAGCGAAACTCCAGA
AGATTGTGAAAGCGTCAAGAGGAGTTTCTGCTTACGAAAAAATTGGAGTT
ACGGTGGCCAACTGCCGTTCGCTGAGCAGGGTAATTGATTTCTATTTTGA
CTCCGAGATTGTAATCGATGAAGGATGGGAAAGAGAAATGAAGTCCCTCA
CTACTTCTGTTTCTCAATTCTTGCGTTGGTGCGTAGCGGCTTCATGTTGT
CGAAAGGAAGATGTATGGAAGGCCGAGTCTTTGTTCGTAGGTATCAGTGA
CTTGGAACTTGTGGAAACGTTTGTTTCTTTCTTTGATCGATGTTGCGAGC
GCAGGACGTTGAAGAACCAAATATCGCACTCGATTCTTGTTCTTCAGGTT
GGTTCTCATTCCGAAGACTGCGGCGACTTGAAGTTGGAAATGCGAACGGT
AATGCGACATTTAAAGAGCAGAAATGGATACCTACCCAGCGGCAATAGAG
AGTAG