Ggra6436.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6436.t1
Unique NameGgra6436.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length310
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:1059..1986 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6436Ggra6436Gracilaria gracilis GNS1m malegenetig00000074_pilon 1059..1986 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6436.t1.CDS1Ggra6436.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 1059..1986 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6436.t1.exon1Ggra6436.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 1059..1986 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6436.t1.start1Ggra6436.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 1984..1986 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6436.t1Ggra6436.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 1059..1986 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6436.t1 ID=Ggra6436.t1|Name=Ggra6436.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=310bp
MIALLLDVDHLNEDNIYLLYKATDSFRLLSSMTRKLCQKYVPETDEEEDQ
ACASDVENLEHSPFQMEVTKNGSHRVNERGLKRSFRKVSTVSVHDPEVAG
ELGELRTREEISNLARGKSIASEIEGSSSVGKGRRNMGSLLELLVEQRKL
LCPTEEKQCDLFRGKRRRFVKPIEAVEDNSMEVLWNEMVNELLLLDPSYL
TSQPWSLLVHSRDGGQLSTKSVSNSIRTFMKNIDGRFEYVTGMVVRSSFA
TSMVHAFRQGTVGNGLAEARYIELLGNRMNTKPGQLKNAYVKIKQVDYED
GVRLAMKHFX
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spliced messenger RNA

>Ggra6436.t1 ID=Ggra6436.t1|Name=Ggra6436.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=928bp|location=Sequence derived from alignment at tig00000074_pilon:1059..1986- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAGCGTTGTTACTCGATGTTGACCATCTTAACGAGGACAATATATA
TCTTCTATACAAAGCGACTGATTCTTTCCGACTTTTGTCTTCAATGACTC
GAAAACTCTGCCAAAAATATGTACCTGAGACAGATGAAGAGGAAGATCAG
GCCTGTGCTTCTGACGTGGAGAACTTGGAACACAGCCCATTTCAGATGGA
AGTGACCAAAAACGGTTCCCACCGTGTCAATGAAAGGGGGTTGAAAAGAT
CGTTTCGAAAAGTCTCTACCGTGTCTGTGCATGATCCCGAAGTTGCCGGC
GAGCTCGGTGAGCTTCGAACACGAGAAGAGATATCAAATCTCGCTCGAGG
CAAATCTATAGCCTCCGAAATTGAAGGCAGTTCTAGCGTTGGCAAAGGAC
GGAGAAATATGGGAAGCTTACTTGAACTTTTGGTGGAGCAGCGCAAGTTG
TTGTGCCCTACTGAAGAAAAGCAATGCGATCTATTTAGAGGAAAGCGTCG
CAGATTCGTGAAACCCATTGAAGCCGTGGAAGATAATTCTATGGAGGTTC
TCTGGAATGAAATGGTAAACGAACTTCTTCTTCTTGATCCGTCTTATTTA
ACAAGCCAACCGTGGTCTCTTTTGGTTCATTCTAGGGATGGAGGTCAGCT
AAGTACGAAGAGCGTGAGCAATTCGATCCGAACATTCATGAAGAACATTG
ATGGACGATTCGAATATGTGACAGGAATGGTAGTTCGATCCAGTTTTGCC
ACTTCAATGGTTCATGCGTTCCGCCAGGGAACGGTGGGGAATGGTTTGGC
GGAAGCAAGGTATATCGAATTGCTGGGCAATCGAATGAATACAAAGCCCG
GGCAGCTTAAAAATGCTTATGTGAAAATCAAACAGGTTGACTACGAGGAT
GGTGTGCGGCTGGCTATGAAGCACTTTC
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protein sequence of Ggra6436.t1

>Ggra6436.t1 ID=Ggra6436.t1|Name=Ggra6436.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=310bp
MIALLLDVDHLNEDNIYLLYKATDSFRLLSSMTRKLCQKYVPETDEEEDQ
ACASDVENLEHSPFQMEVTKNGSHRVNERGLKRSFRKVSTVSVHDPEVAG
ELGELRTREEISNLARGKSIASEIEGSSSVGKGRRNMGSLLELLVEQRKL
LCPTEEKQCDLFRGKRRRFVKPIEAVEDNSMEVLWNEMVNELLLLDPSYL
TSQPWSLLVHSRDGGQLSTKSVSNSIRTFMKNIDGRFEYVTGMVVRSSFA
TSMVHAFRQGTVGNGLAEARYIELLGNRMNTKPGQLKNAYVKIKQVDYED
GVRLAMKHFX
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mRNA from alignment at tig00000074_pilon:1059..1986-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6436.t1 ID=Ggra6436.t1|Name=Ggra6436.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=928bp|location=Sequence derived from alignment at tig00000074_pilon:1059..1986- (Gracilaria gracilis GNS1m male)
ATGATAGCGTTGTTACTCGATGTTGACCATCTTAACGAGGACAATATATA
TCTTCTATACAAAGCGACTGATTCTTTCCGACTTTTGTCTTCAATGACTC
GAAAACTCTGCCAAAAATATGTACCTGAGACAGATGAAGAGGAAGATCAG
GCCTGTGCTTCTGACGTGGAGAACTTGGAACACAGCCCATTTCAGATGGA
AGTGACCAAAAACGGTTCCCACCGTGTCAATGAAAGGGGGTTGAAAAGAT
CGTTTCGAAAAGTCTCTACCGTGTCTGTGCATGATCCCGAAGTTGCCGGC
GAGCTCGGTGAGCTTCGAACACGAGAAGAGATATCAAATCTCGCTCGAGG
CAAATCTATAGCCTCCGAAATTGAAGGCAGTTCTAGCGTTGGCAAAGGAC
GGAGAAATATGGGAAGCTTACTTGAACTTTTGGTGGAGCAGCGCAAGTTG
TTGTGCCCTACTGAAGAAAAGCAATGCGATCTATTTAGAGGAAAGCGTCG
CAGATTCGTGAAACCCATTGAAGCCGTGGAAGATAATTCTATGGAGGTTC
TCTGGAATGAAATGGTAAACGAACTTCTTCTTCTTGATCCGTCTTATTTA
ACAAGCCAACCGTGGTCTCTTTTGGTTCATTCTAGGGATGGAGGTCAGCT
AAGTACGAAGAGCGTGAGCAATTCGATCCGAACATTCATGAAGAACATTG
ATGGACGATTCGAATATGTGACAGGAATGGTAGTTCGATCCAGTTTTGCC
ACTTCAATGGTTCATGCGTTCCGCCAGGGAACGGTGGGGAATGGTTTGGC
GGAAGCAAGGTATATCGAATTGCTGGGCAATCGAATGAATACAAAGCCCG
GGCAGCTTAAAAATGCTTATGTGAAAATCAAACAGGTTGACTACGAGGAT
GGTGTGCGGCTGGCTATGAAGCACTTTC
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Coding sequence (CDS) from alignment at tig00000074_pilon:1059..1986-

>Ggra6436.t1 ID=Ggra6436.t1|Name=Ggra6436.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=928bp|location=Sequence derived from alignment at tig00000074_pilon:1059..1986- (Gracilaria gracilis GNS1m male)
ATGATAGCGTTGTTACTCGATGTTGACCATCTTAACGAGGACAATATATA
TCTTCTATACAAAGCGACTGATTCTTTCCGACTTTTGTCTTCAATGACTC
GAAAACTCTGCCAAAAATATGTACCTGAGACAGATGAAGAGGAAGATCAG
GCCTGTGCTTCTGACGTGGAGAACTTGGAACACAGCCCATTTCAGATGGA
AGTGACCAAAAACGGTTCCCACCGTGTCAATGAAAGGGGGTTGAAAAGAT
CGTTTCGAAAAGTCTCTACCGTGTCTGTGCATGATCCCGAAGTTGCCGGC
GAGCTCGGTGAGCTTCGAACACGAGAAGAGATATCAAATCTCGCTCGAGG
CAAATCTATAGCCTCCGAAATTGAAGGCAGTTCTAGCGTTGGCAAAGGAC
GGAGAAATATGGGAAGCTTACTTGAACTTTTGGTGGAGCAGCGCAAGTTG
TTGTGCCCTACTGAAGAAAAGCAATGCGATCTATTTAGAGGAAAGCGTCG
CAGATTCGTGAAACCCATTGAAGCCGTGGAAGATAATTCTATGGAGGTTC
TCTGGAATGAAATGGTAAACGAACTTCTTCTTCTTGATCCGTCTTATTTA
ACAAGCCAACCGTGGTCTCTTTTGGTTCATTCTAGGGATGGAGGTCAGCT
AAGTACGAAGAGCGTGAGCAATTCGATCCGAACATTCATGAAGAACATTG
ATGGACGATTCGAATATGTGACAGGAATGGTAGTTCGATCCAGTTTTGCC
ACTTCAATGGTTCATGCGTTCCGCCAGGGAACGGTGGGGAATGGTTTGGC
GGAAGCAAGGTATATCGAATTGCTGGGCAATCGAATGAATACAAAGCCCG
GGCAGCTTAAAAATGCTTATGTGAAAATCAAACAGGTTGACTACGAGGAT
GGTGTGCGGCTGGCTATGAAGCACTTTC
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