Ggra643.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra643.t1
Unique Name	Ggra643.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	444

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000243_pilon	contig	tig00000243_pilon:58258..59589 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra643	Ggra643	Gracilaria gracilis GNS1m male	gene	tig00000243_pilon 58258..59589 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra643.t1.start1	Ggra643.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000243_pilon 58258..58260 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra643.t1.CDS1	Ggra643.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000243_pilon 58258..59589 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra643.t1.exon1	Ggra643.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000243_pilon 58258..59589 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra643.t1.stop1	Ggra643.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000243_pilon 59587..59589 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra643.t1	Ggra643.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000243_pilon 58258..59589 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000243_pilon:58258..59589+
coding sequence from alignment at tig00000243_pilon:58258..59589+

mRNA sequence

>Ggra643.t1 ID=Ggra643.t1|Name=Ggra643.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=444bp
MRKKSVCDSDSCLRFAGKRRELDCNNASDGSDSSLVQFRRGGKRKKSWKV
CDSDSSCGSARKRRELDCNNASDGSDSSLVQFRRGGKRVKSWNVSNSDRD
YCSSGGVRPRTKRKLSLDIFHESEENTCQPAKGPLERKKRVTPDAPHNLF
ESSSERRFVMSEGDEREAIDVDCGSQGSGSAEEHPRDQQHGEVINLVPDE
DADARTESSRDHQHGEVINLVTDEDADAKTESCQGSTASVEMAWKLCLNQ
LEQKKPDIFSGAEAKMQIVSKARQGQSVYEGIRVTEDNCLGVRAVLAAWK
KSEGPKTPTRKAEKELVTTVSQFLRWSVTSGNCSKTNVWKEAALFQSIAK
SRLVERFLMYFQKRCEDSTVRKKVSHLLIVCEAACSRKSHGDIRDISMVL
QVVYGKKRMRAACGIQGRNTQRHFKRPSKRHAGSLVMKKRESR*

spliced messenger RNA

>Ggra643.t1 ID=Ggra643.t1|Name=Ggra643.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1332bp|location=Sequence derived from alignment at tig00000243_pilon:58258..59589+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGAAGAAGAGTGTATGCGACTCAGACAGCTGTCTTAGATTCGCTGG
GAAGAGGAGGGAGCTGGACTGCAATAATGCCAGTGATGGCAGTGACAGCT
CTCTTGTTCAATTTCGACGCGGTGGGAAGAGGAAGAAGAGTTGGAAAGTC
TGCGACTCAGACAGCTCTTGTGGATCCGCGAGGAAGAGGAGAGAGCTGGA
CTGCAATAATGCCAGTGATGGCAGTGACAGCTCTCTTGTTCAATTTCGAC
GCGGTGGGAAGAGGGTGAAAAGTTGGAACGTCTCCAACTCAGACAGGGAC
TACTGTTCCTCTGGCGGAGTTAGACCCCGGACGAAGAGGAAGCTGAGCTT
GGATATTTTCCATGAATCTGAAGAGAACACCTGCCAACCGGCGAAGGGTC
CACTAGAGCGAAAGAAGAGGGTTACACCTGATGCCCCACATAACTTATTC
GAATCTTCAAGTGAGAGGAGGTTTGTGATGTCGGAGGGTGACGAACGCGA
AGCGATTGACGTTGACTGCGGGAGCCAAGGCAGTGGTTCAGCTGAAGAGC
ATCCTCGTGATCAACAGCATGGTGAAGTTATCAATCTTGTGCCAGATGAA
GATGCTGACGCAAGGACAGAATCTTCTCGTGATCACCAGCATGGTGAAGT
TATCAATCTTGTGACAGATGAAGATGCTGACGCAAAGACAGAATCTTGTC
AAGGATCTACGGCTTCCGTGGAAATGGCATGGAAGTTGTGCCTCAATCAA
CTCGAACAGAAGAAGCCAGATATCTTCTCGGGAGCCGAAGCAAAGATGCA
AATCGTCTCCAAAGCACGGCAGGGGCAATCAGTATATGAGGGCATCAGGG
TAACGGAGGACAACTGCCTCGGAGTACGAGCTGTCTTGGCAGCCTGGAAG
AAGTCTGAGGGGCCCAAGACGCCGACGAGAAAGGCGGAAAAGGAGCTTGT
GACAACTGTTTCTCAGTTTTTGCGTTGGTCCGTAACGAGCGGGAATTGCT
CCAAAACGAATGTGTGGAAAGAGGCGGCTCTGTTTCAAAGTATCGCAAAA
AGCAGACTGGTTGAACGTTTCTTGATGTACTTCCAAAAACGTTGCGAAGA
TAGTACTGTGCGGAAGAAAGTGAGTCATTTACTGATCGTTTGCGAGGCTG
CATGCTCTAGAAAATCGCATGGTGACATTCGGGACATATCGATGGTACTC
CAGGTTGTATATGGTAAGAAAAGAATGCGTGCAGCCTGCGGAATTCAAGG
ACGGAACACTCAGCGGCATTTCAAGCGCCCATCCAAGCGTCATGCTGGCT
CATTGGTCATGAAGAAGAGGGAATCGCGTTGA

protein sequence of Ggra643.t1

>Ggra643.t1 ID=Ggra643.t1|Name=Ggra643.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=444bp
MRKKSVCDSDSCLRFAGKRRELDCNNASDGSDSSLVQFRRGGKRKKSWKV
CDSDSSCGSARKRRELDCNNASDGSDSSLVQFRRGGKRVKSWNVSNSDRD
YCSSGGVRPRTKRKLSLDIFHESEENTCQPAKGPLERKKRVTPDAPHNLF
ESSSERRFVMSEGDEREAIDVDCGSQGSGSAEEHPRDQQHGEVINLVPDE
DADARTESSRDHQHGEVINLVTDEDADAKTESCQGSTASVEMAWKLCLNQ
LEQKKPDIFSGAEAKMQIVSKARQGQSVYEGIRVTEDNCLGVRAVLAAWK
KSEGPKTPTRKAEKELVTTVSQFLRWSVTSGNCSKTNVWKEAALFQSIAK
SRLVERFLMYFQKRCEDSTVRKKVSHLLIVCEAACSRKSHGDIRDISMVL
QVVYGKKRMRAACGIQGRNTQRHFKRPSKRHAGSLVMKKRESR*

mRNA from alignment at tig00000243_pilon:58258..59589+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra643.t1 ID=Ggra643.t1|Name=Ggra643.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1332bp|location=Sequence derived from alignment at tig00000243_pilon:58258..59589+ (Gracilaria gracilis GNS1m male)
ATGAGGAAGAAGAGTGTATGCGACTCAGACAGCTGTCTTAGATTCGCTGG
GAAGAGGAGGGAGCTGGACTGCAATAATGCCAGTGATGGCAGTGACAGCT
CTCTTGTTCAATTTCGACGCGGTGGGAAGAGGAAGAAGAGTTGGAAAGTC
TGCGACTCAGACAGCTCTTGTGGATCCGCGAGGAAGAGGAGAGAGCTGGA
CTGCAATAATGCCAGTGATGGCAGTGACAGCTCTCTTGTTCAATTTCGAC
GCGGTGGGAAGAGGGTGAAAAGTTGGAACGTCTCCAACTCAGACAGGGAC
TACTGTTCCTCTGGCGGAGTTAGACCCCGGACGAAGAGGAAGCTGAGCTT
GGATATTTTCCATGAATCTGAAGAGAACACCTGCCAACCGGCGAAGGGTC
CACTAGAGCGAAAGAAGAGGGTTACACCTGATGCCCCACATAACTTATTC
GAATCTTCAAGTGAGAGGAGGTTTGTGATGTCGGAGGGTGACGAACGCGA
AGCGATTGACGTTGACTGCGGGAGCCAAGGCAGTGGTTCAGCTGAAGAGC
ATCCTCGTGATCAACAGCATGGTGAAGTTATCAATCTTGTGCCAGATGAA
GATGCTGACGCAAGGACAGAATCTTCTCGTGATCACCAGCATGGTGAAGT
TATCAATCTTGTGACAGATGAAGATGCTGACGCAAAGACAGAATCTTGTC
AAGGATCTACGGCTTCCGTGGAAATGGCATGGAAGTTGTGCCTCAATCAA
CTCGAACAGAAGAAGCCAGATATCTTCTCGGGAGCCGAAGCAAAGATGCA
AATCGTCTCCAAAGCACGGCAGGGGCAATCAGTATATGAGGGCATCAGGG
TAACGGAGGACAACTGCCTCGGAGTACGAGCTGTCTTGGCAGCCTGGAAG
AAGTCTGAGGGGCCCAAGACGCCGACGAGAAAGGCGGAAAAGGAGCTTGT
GACAACTGTTTCTCAGTTTTTGCGTTGGTCCGTAACGAGCGGGAATTGCT
CCAAAACGAATGTGTGGAAAGAGGCGGCTCTGTTTCAAAGTATCGCAAAA
AGCAGACTGGTTGAACGTTTCTTGATGTACTTCCAAAAACGTTGCGAAGA
TAGTACTGTGCGGAAGAAAGTGAGTCATTTACTGATCGTTTGCGAGGCTG
CATGCTCTAGAAAATCGCATGGTGACATTCGGGACATATCGATGGTACTC
CAGGTTGTATATGGTAAGAAAAGAATGCGTGCAGCCTGCGGAATTCAAGG
ACGGAACACTCAGCGGCATTTCAAGCGCCCATCCAAGCGTCATGCTGGCT
CATTGGTCATGAAGAAGAGGGAATCGCGTTGA

Coding sequence (CDS) from alignment at tig00000243_pilon:58258..59589+

>Ggra643.t1 ID=Ggra643.t1|Name=Ggra643.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1332bp|location=Sequence derived from alignment at tig00000243_pilon:58258..59589+ (Gracilaria gracilis GNS1m male)
ATGAGGAAGAAGAGTGTATGCGACTCAGACAGCTGTCTTAGATTCGCTGG
GAAGAGGAGGGAGCTGGACTGCAATAATGCCAGTGATGGCAGTGACAGCT
CTCTTGTTCAATTTCGACGCGGTGGGAAGAGGAAGAAGAGTTGGAAAGTC
TGCGACTCAGACAGCTCTTGTGGATCCGCGAGGAAGAGGAGAGAGCTGGA
CTGCAATAATGCCAGTGATGGCAGTGACAGCTCTCTTGTTCAATTTCGAC
GCGGTGGGAAGAGGGTGAAAAGTTGGAACGTCTCCAACTCAGACAGGGAC
TACTGTTCCTCTGGCGGAGTTAGACCCCGGACGAAGAGGAAGCTGAGCTT
GGATATTTTCCATGAATCTGAAGAGAACACCTGCCAACCGGCGAAGGGTC
CACTAGAGCGAAAGAAGAGGGTTACACCTGATGCCCCACATAACTTATTC
GAATCTTCAAGTGAGAGGAGGTTTGTGATGTCGGAGGGTGACGAACGCGA
AGCGATTGACGTTGACTGCGGGAGCCAAGGCAGTGGTTCAGCTGAAGAGC
ATCCTCGTGATCAACAGCATGGTGAAGTTATCAATCTTGTGCCAGATGAA
GATGCTGACGCAAGGACAGAATCTTCTCGTGATCACCAGCATGGTGAAGT
TATCAATCTTGTGACAGATGAAGATGCTGACGCAAAGACAGAATCTTGTC
AAGGATCTACGGCTTCCGTGGAAATGGCATGGAAGTTGTGCCTCAATCAA
CTCGAACAGAAGAAGCCAGATATCTTCTCGGGAGCCGAAGCAAAGATGCA
AATCGTCTCCAAAGCACGGCAGGGGCAATCAGTATATGAGGGCATCAGGG
TAACGGAGGACAACTGCCTCGGAGTACGAGCTGTCTTGGCAGCCTGGAAG
AAGTCTGAGGGGCCCAAGACGCCGACGAGAAAGGCGGAAAAGGAGCTTGT
GACAACTGTTTCTCAGTTTTTGCGTTGGTCCGTAACGAGCGGGAATTGCT
CCAAAACGAATGTGTGGAAAGAGGCGGCTCTGTTTCAAAGTATCGCAAAA
AGCAGACTGGTTGAACGTTTCTTGATGTACTTCCAAAAACGTTGCGAAGA
TAGTACTGTGCGGAAGAAAGTGAGTCATTTACTGATCGTTTGCGAGGCTG
CATGCTCTAGAAAATCGCATGGTGACATTCGGGACATATCGATGGTACTC
CAGGTTGTATATGGTAAGAAAAGAATGCGTGCAGCCTGCGGAATTCAAGG
ACGGAACACTCAGCGGCATTTCAAGCGCCCATCCAAGCGTCATGCTGGCT
CATTGGTCATGAAGAAGAGGGAATCGCGTTGA