Ggra6424.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6424.t1
Unique NameGgra6424.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length258
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000918_piloncontigtig00000918_pilon:144431..145377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6424Ggra6424Gracilaria gracilis GNS1m malegenetig00000918_pilon 144431..145377 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6424.t1Ggra6424.t1Gracilaria gracilis GNS1m malepolypeptidetig00000918_pilon 144431..145377 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6424.t1.stop1Ggra6424.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000918_pilon 144431..144433 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6424.t1.CDS1Ggra6424.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000918_pilon 144431..144633 -
Ggra6424.t1.CDS2Ggra6424.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000918_pilon 144807..145377 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6424.t1.exon1Ggra6424.t1.exon1Gracilaria gracilis GNS1m maleexontig00000918_pilon 144431..144633 -
Ggra6424.t1.exon2Ggra6424.t1.exon2Gracilaria gracilis GNS1m maleexontig00000918_pilon 144807..145377 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6424.t1.intron1Ggra6424.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000918_pilon 144634..144806 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6424.t1.start1Ggra6424.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000918_pilon 145375..145377 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6424.t1 ID=Ggra6424.t1|Name=Ggra6424.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=258bp
MNDSSDRLLLTLMTMPVSSYSLEQYLLDGYKERIRNLAANVTTEVSGIGL
ACVCLDDIIGLQKLSFDSMDGIDVRPRLNDESGIARGTCEASSSCATDSN
GNLPEASLTGESTVEGKKKNSKTRRGHRGRKQGARGSKATNPEELREREG
ANAEVLQPGLDSGLELNQESGNAHGTTSRLSGDEVNPESGPPPPLPLPLL
PNSWRARKARERCAHNATAAADGKRGAQQLRFCGKKLHKLVSRVLERASQ
ERKRFAA*
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spliced messenger RNA

>Ggra6424.t1 ID=Ggra6424.t1|Name=Ggra6424.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=774bp|location=Sequence derived from alignment at tig00000918_pilon:144431..145377- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGATTCCTCCGATCGACTTCTCCTCACCCTAATGACAATGCCGGT
GTCATCCTATTCGCTTGAGCAATATCTGCTTGATGGGTACAAAGAGAGGA
TTCGCAATCTGGCTGCAAATGTAACGACAGAGGTGTCAGGGATTGGATTA
GCTTGTGTCTGCCTAGATGATATAATTGGCCTTCAAAAGCTCAGTTTTGA
CTCTATGGATGGCATCGATGTACGCCCTCGCTTGAATGATGAAAGTGGCA
TCGCTAGGGGCACCTGTGAAGCCAGCAGTTCTTGTGCAACCGATTCTAAC
GGTAATCTTCCGGAAGCGTCTTTGACCGGCGAAAGCACTGTCGAAGGAAA
GAAAAAGAATTCAAAAACCCGTAGAGGCCATCGTGGGCGCAAGCAGGGTG
CTCGGGGATCGAAAGCGACTAATCCTGAAGAGCTGCGCGAACGTGAAGGT
GCCAATGCGGAAGTGCTGCAGCCAGGTTTGGATTCAGGCCTCGAACTAAA
CCAGGAGAGCGGAAACGCTCATGGTACTACAAGCAGACTATCGGGAGATG
AAGTTAACCCCGAAAGCGGACCGCCGCCGCCGCTGCCGTTGCCGCTGCTC
CCAAATTCATGGAGAGCGCGCAAGGCGCGCGAGCGTTGTGCACACAACGC
CACCGCTGCTGCCGATGGCAAGCGCGGCGCGCAGCAATTGCGTTTCTGCG
GAAAGAAATTGCATAAGCTTGTCTCACGAGTTTTAGAAAGAGCGAGCCAA
GAACGAAAGAGGTTTGCAGCGTAA
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protein sequence of Ggra6424.t1

>Ggra6424.t1 ID=Ggra6424.t1|Name=Ggra6424.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=258bp
MNDSSDRLLLTLMTMPVSSYSLEQYLLDGYKERIRNLAANVTTEVSGIGL
ACVCLDDIIGLQKLSFDSMDGIDVRPRLNDESGIARGTCEASSSCATDSN
GNLPEASLTGESTVEGKKKNSKTRRGHRGRKQGARGSKATNPEELREREG
ANAEVLQPGLDSGLELNQESGNAHGTTSRLSGDEVNPESGPPPPLPLPLL
PNSWRARKARERCAHNATAAADGKRGAQQLRFCGKKLHKLVSRVLERASQ
ERKRFAA*
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mRNA from alignment at tig00000918_pilon:144431..145377-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6424.t1 ID=Ggra6424.t1|Name=Ggra6424.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=947bp|location=Sequence derived from alignment at tig00000918_pilon:144431..145377- (Gracilaria gracilis GNS1m male)
ATGAATGATTCCTCCGATCGACTTCTCCTCACCCTAATGACAATGCCGGT
GTCATCCTATTCGCTTGAGCAATATCTGCTTGATGGGTACAAAGAGAGGA
TTCGCAATCTGGCTGCAAATGTAACGACAGAGGTGTCAGGGATTGGATTA
GCTTGTGTCTGCCTAGATGATATAATTGGCCTTCAAAAGCTCAGTTTTGA
CTCTATGGATGGCATCGATGTACGCCCTCGCTTGAATGATGAAAGTGGCA
TCGCTAGGGGCACCTGTGAAGCCAGCAGTTCTTGTGCAACCGATTCTAAC
GGTAATCTTCCGGAAGCGTCTTTGACCGGCGAAAGCACTGTCGAAGGAAA
GAAAAAGAATTCAAAAACCCGTAGAGGCCATCGTGGGCGCAAGCAGGGTG
CTCGGGGATCGAAAGCGACTAATCCTGAAGAGCTGCGCGAACGTGAAGGT
GCCAATGCGGAAGTGCTGCAGCCAGGTTTGGATTCAGGCCTCGAACTAAA
CCAGGAGAGCGGAAACGCTCATGGTACTACAAGCAGACTATCGGGAGATG
AAGTTAACCCCGAAAGCGGACGTCCGTATCGAGGTTCTCGAGGTGGACGT
GGAAGGAGAGGTCGCCGAGGTGGCCGTGGGAGCCGAGGTGGCCGCGGGAG
CCGAGGTGGCCGTGGGAGCCGAGGCGGTCGAGGGGAGACTGCATAACCGA
ATTGACGGAACGAATGAGCATTGTATTCGTTTCCTTTCGTATAGCGCCGC
CGCCGCTGCCGTTGCCGCTGCTCCCAAATTCATGGAGAGCGCGCAAGGCG
CGCGAGCGTTGTGCACACAACGCCACCGCTGCTGCCGATGGCAAGCGCGG
CGCGCAGCAATTGCGTTTCTGCGGAAAGAAATTGCATAAGCTTGTCTCAC
GAGTTTTAGAAAGAGCGAGCCAAGAACGAAAGAGGTTTGCAGCGTAA
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Coding sequence (CDS) from alignment at tig00000918_pilon:144431..145377-

>Ggra6424.t1 ID=Ggra6424.t1|Name=Ggra6424.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=774bp|location=Sequence derived from alignment at tig00000918_pilon:144431..145377- (Gracilaria gracilis GNS1m male)
ATGAATGATTCCTCCGATCGACTTCTCCTCACCCTAATGACAATGCCGGT
GTCATCCTATTCGCTTGAGCAATATCTGCTTGATGGGTACAAAGAGAGGA
TTCGCAATCTGGCTGCAAATGTAACGACAGAGGTGTCAGGGATTGGATTA
GCTTGTGTCTGCCTAGATGATATAATTGGCCTTCAAAAGCTCAGTTTTGA
CTCTATGGATGGCATCGATGTACGCCCTCGCTTGAATGATGAAAGTGGCA
TCGCTAGGGGCACCTGTGAAGCCAGCAGTTCTTGTGCAACCGATTCTAAC
GGTAATCTTCCGGAAGCGTCTTTGACCGGCGAAAGCACTGTCGAAGGAAA
GAAAAAGAATTCAAAAACCCGTAGAGGCCATCGTGGGCGCAAGCAGGGTG
CTCGGGGATCGAAAGCGACTAATCCTGAAGAGCTGCGCGAACGTGAAGGT
GCCAATGCGGAAGTGCTGCAGCCAGGTTTGGATTCAGGCCTCGAACTAAA
CCAGGAGAGCGGAAACGCTCATGGTACTACAAGCAGACTATCGGGAGATG
AAGTTAACCCCGAAAGCGGACCGCCGCCGCCGCTGCCGTTGCCGCTGCTC
CCAAATTCATGGAGAGCGCGCAAGGCGCGCGAGCGTTGTGCACACAACGC
CACCGCTGCTGCCGATGGCAAGCGCGGCGCGCAGCAATTGCGTTTCTGCG
GAAAGAAATTGCATAAGCTTGTCTCACGAGTTTTAGAAAGAGCGAGCCAA
GAACGAAAGAGGTTTGCAGCGTAA
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