Ggra6421.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6421.t1
Unique NameGgra6421.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length549
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000918_piloncontigtig00000918_pilon:133891..135537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705532.1
PFAMsWD40
Max annot lvl2759|Eukaryota
KEGG koko:K17985
KEGG Pathwayko04137,ko04140,map04137,map04140
Evalue2.28e-109
EggNOG OGsKOG0266@1|root,KOG0266@2759|Eukaryota
DescriptionWD repeat-containing protein
COG categoryB
BRITEko00000,ko00001,ko03029,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6421Ggra6421Gracilaria gracilis GNS1m malegenetig00000918_pilon 133891..135537 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6421.t1.stop1Ggra6421.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000918_pilon 133891..133893 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6421.t1.CDS1Ggra6421.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000918_pilon 133891..135537 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6421.t1.exon1Ggra6421.t1.exon1Gracilaria gracilis GNS1m maleexontig00000918_pilon 133891..135537 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6421.t1.start1Ggra6421.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000918_pilon 135535..135537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6421.t1Ggra6421.t1Gracilaria gracilis GNS1m malepolypeptidetig00000918_pilon 133891..135537 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6421.t1 ID=Ggra6421.t1|Name=Ggra6421.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=549bp
MQPLSFTPMLPQPYHVPHLPPPPPDTDMDMSSVRRRPRRATGHYFVRARE
MGAPDACNHALHSWVEGNTLRTLDAGRYVPLDKAVPLVRSTISIAFSHDA
RYYASTHGDHTVKVFEYPSGNQIACLEGHPRTPWTVRFHPTDSSILASGC
IGHECRIWNVAKKDCIRRHTFGASISCVSFSPDGSLLAVTSGRKLMLWQW
MQPTADNDPNTSSELDGHNRPGLPRQVIEGRQPFHMVDFHPSGTMLMTGE
KNETRTTSLVHEAPNTAREQFTLKLVVHRFNSRLGDKYSEPILVVPRAVA
YNDAGIHFSPCGTMLAACIPIPCDQPNDFHIAVMSLVKRGNVNIGTVLHS
SPLDAGRVSALTNLKFSPTSTHLLAGFSFRSTNPVLRVQAEHYDATAGDR
PDALDRRPPQVRVVDIYHISPRFELIRSLCADMDVSEGHTGGPEDEINVA
VFAPNVGVADGIVYGTQKGRIRIFQQATGPVSKVVSFAECDAEESISDWT
GDNPNGWCENGQQRSLPRSNLTAPPYMLRPLPSSGNSRRRLPYRTHLV*
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spliced messenger RNA

>Ggra6421.t1 ID=Ggra6421.t1|Name=Ggra6421.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1647bp|location=Sequence derived from alignment at tig00000918_pilon:133891..135537- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCCTTGTCTTTCACTCCCATGCTCCCACAGCCGTACCACGTCCC
CCATTTACCGCCCCCGCCCCCCGATACCGACATGGATATGTCCAGCGTGC
GTCGCCGCCCCCGCCGCGCCACCGGCCATTACTTCGTGCGCGCCAGGGAG
ATGGGCGCCCCCGACGCTTGTAACCACGCCTTGCACTCGTGGGTGGAAGG
AAACACCCTCCGCACCCTCGACGCCGGTCGCTACGTCCCCCTAGACAAGG
CCGTGCCGCTCGTGCGCAGCACCATCAGTATCGCCTTCAGTCATGACGCC
CGTTACTACGCTTCCACCCACGGCGATCACACCGTCAAGGTCTTCGAGTA
CCCCTCTGGCAACCAGATTGCCTGTTTAGAGGGGCATCCGCGCACGCCTT
GGACCGTGCGCTTTCATCCCACCGACTCTTCCATCCTCGCCTCGGGCTGT
ATTGGCCATGAGTGTCGCATCTGGAACGTTGCCAAGAAAGACTGCATCCG
CCGTCACACCTTTGGTGCCAGCATTTCCTGCGTCAGCTTCTCGCCCGACG
GCTCGTTGCTCGCCGTCACCTCCGGTCGCAAGTTGATGTTGTGGCAATGG
ATGCAACCCACTGCAGACAACGATCCCAACACTTCTTCAGAGCTCGACGG
CCACAATCGACCAGGCCTTCCACGTCAGGTTATCGAGGGCCGTCAACCTT
TTCACATGGTCGACTTTCACCCCTCCGGCACCATGCTCATGACGGGCGAG
AAGAACGAGACGCGTACAACCTCGCTCGTACACGAGGCTCCCAACACTGC
CAGGGAGCAGTTCACCCTCAAACTCGTCGTGCATCGCTTCAACAGCCGCC
TAGGCGACAAGTATTCCGAGCCTATTCTCGTCGTTCCTCGCGCTGTCGCG
TACAACGATGCAGGCATCCACTTCTCGCCGTGCGGTACCATGCTTGCTGC
ATGTATTCCCATCCCGTGCGATCAACCCAACGACTTTCATATAGCCGTCA
TGTCGCTCGTTAAACGGGGAAATGTCAACATTGGCACCGTCTTGCATAGT
TCCCCCTTGGATGCCGGAAGAGTCAGTGCGCTTACCAATCTCAAGTTCTC
CCCTACCTCTACCCATCTTCTCGCTGGTTTCTCTTTTCGCTCTACCAACC
CCGTTCTTCGCGTACAAGCCGAACATTACGATGCTACCGCGGGCGATCGG
CCAGACGCACTTGATCGCCGGCCACCGCAGGTGCGCGTTGTGGACATCTA
CCATATTAGTCCACGCTTCGAGTTGATCCGAAGCTTGTGCGCTGACATGG
ACGTCAGTGAGGGGCATACCGGAGGTCCGGAAGACGAGATTAACGTCGCA
GTGTTTGCCCCCAACGTTGGCGTGGCCGATGGCATTGTGTATGGCACACA
AAAGGGGCGTATTCGCATATTCCAGCAAGCAACGGGTCCTGTTTCGAAGG
TCGTTTCTTTTGCGGAGTGTGATGCGGAGGAGAGTATTTCAGATTGGACA
GGCGATAATCCCAATGGATGGTGCGAGAATGGGCAACAACGTTCGTTACC
GCGGAGCAATTTGACCGCCCCTCCCTATATGTTGCGACCGCTTCCTTCGT
CGGGAAACAGTCGGCGTCGCTTGCCATATCGCACCCATCTGGTATGA
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protein sequence of Ggra6421.t1

>Ggra6421.t1 ID=Ggra6421.t1|Name=Ggra6421.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=549bp
MQPLSFTPMLPQPYHVPHLPPPPPDTDMDMSSVRRRPRRATGHYFVRARE
MGAPDACNHALHSWVEGNTLRTLDAGRYVPLDKAVPLVRSTISIAFSHDA
RYYASTHGDHTVKVFEYPSGNQIACLEGHPRTPWTVRFHPTDSSILASGC
IGHECRIWNVAKKDCIRRHTFGASISCVSFSPDGSLLAVTSGRKLMLWQW
MQPTADNDPNTSSELDGHNRPGLPRQVIEGRQPFHMVDFHPSGTMLMTGE
KNETRTTSLVHEAPNTAREQFTLKLVVHRFNSRLGDKYSEPILVVPRAVA
YNDAGIHFSPCGTMLAACIPIPCDQPNDFHIAVMSLVKRGNVNIGTVLHS
SPLDAGRVSALTNLKFSPTSTHLLAGFSFRSTNPVLRVQAEHYDATAGDR
PDALDRRPPQVRVVDIYHISPRFELIRSLCADMDVSEGHTGGPEDEINVA
VFAPNVGVADGIVYGTQKGRIRIFQQATGPVSKVVSFAECDAEESISDWT
GDNPNGWCENGQQRSLPRSNLTAPPYMLRPLPSSGNSRRRLPYRTHLV*
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mRNA from alignment at tig00000918_pilon:133891..135537-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6421.t1 ID=Ggra6421.t1|Name=Ggra6421.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1647bp|location=Sequence derived from alignment at tig00000918_pilon:133891..135537- (Gracilaria gracilis GNS1m male)
ATGCAGCCCTTGTCTTTCACTCCCATGCTCCCACAGCCGTACCACGTCCC
CCATTTACCGCCCCCGCCCCCCGATACCGACATGGATATGTCCAGCGTGC
GTCGCCGCCCCCGCCGCGCCACCGGCCATTACTTCGTGCGCGCCAGGGAG
ATGGGCGCCCCCGACGCTTGTAACCACGCCTTGCACTCGTGGGTGGAAGG
AAACACCCTCCGCACCCTCGACGCCGGTCGCTACGTCCCCCTAGACAAGG
CCGTGCCGCTCGTGCGCAGCACCATCAGTATCGCCTTCAGTCATGACGCC
CGTTACTACGCTTCCACCCACGGCGATCACACCGTCAAGGTCTTCGAGTA
CCCCTCTGGCAACCAGATTGCCTGTTTAGAGGGGCATCCGCGCACGCCTT
GGACCGTGCGCTTTCATCCCACCGACTCTTCCATCCTCGCCTCGGGCTGT
ATTGGCCATGAGTGTCGCATCTGGAACGTTGCCAAGAAAGACTGCATCCG
CCGTCACACCTTTGGTGCCAGCATTTCCTGCGTCAGCTTCTCGCCCGACG
GCTCGTTGCTCGCCGTCACCTCCGGTCGCAAGTTGATGTTGTGGCAATGG
ATGCAACCCACTGCAGACAACGATCCCAACACTTCTTCAGAGCTCGACGG
CCACAATCGACCAGGCCTTCCACGTCAGGTTATCGAGGGCCGTCAACCTT
TTCACATGGTCGACTTTCACCCCTCCGGCACCATGCTCATGACGGGCGAG
AAGAACGAGACGCGTACAACCTCGCTCGTACACGAGGCTCCCAACACTGC
CAGGGAGCAGTTCACCCTCAAACTCGTCGTGCATCGCTTCAACAGCCGCC
TAGGCGACAAGTATTCCGAGCCTATTCTCGTCGTTCCTCGCGCTGTCGCG
TACAACGATGCAGGCATCCACTTCTCGCCGTGCGGTACCATGCTTGCTGC
ATGTATTCCCATCCCGTGCGATCAACCCAACGACTTTCATATAGCCGTCA
TGTCGCTCGTTAAACGGGGAAATGTCAACATTGGCACCGTCTTGCATAGT
TCCCCCTTGGATGCCGGAAGAGTCAGTGCGCTTACCAATCTCAAGTTCTC
CCCTACCTCTACCCATCTTCTCGCTGGTTTCTCTTTTCGCTCTACCAACC
CCGTTCTTCGCGTACAAGCCGAACATTACGATGCTACCGCGGGCGATCGG
CCAGACGCACTTGATCGCCGGCCACCGCAGGTGCGCGTTGTGGACATCTA
CCATATTAGTCCACGCTTCGAGTTGATCCGAAGCTTGTGCGCTGACATGG
ACGTCAGTGAGGGGCATACCGGAGGTCCGGAAGACGAGATTAACGTCGCA
GTGTTTGCCCCCAACGTTGGCGTGGCCGATGGCATTGTGTATGGCACACA
AAAGGGGCGTATTCGCATATTCCAGCAAGCAACGGGTCCTGTTTCGAAGG
TCGTTTCTTTTGCGGAGTGTGATGCGGAGGAGAGTATTTCAGATTGGACA
GGCGATAATCCCAATGGATGGTGCGAGAATGGGCAACAACGTTCGTTACC
GCGGAGCAATTTGACCGCCCCTCCCTATATGTTGCGACCGCTTCCTTCGT
CGGGAAACAGTCGGCGTCGCTTGCCATATCGCACCCATCTGGTATGA
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Coding sequence (CDS) from alignment at tig00000918_pilon:133891..135537-

>Ggra6421.t1 ID=Ggra6421.t1|Name=Ggra6421.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1647bp|location=Sequence derived from alignment at tig00000918_pilon:133891..135537- (Gracilaria gracilis GNS1m male)
ATGCAGCCCTTGTCTTTCACTCCCATGCTCCCACAGCCGTACCACGTCCC
CCATTTACCGCCCCCGCCCCCCGATACCGACATGGATATGTCCAGCGTGC
GTCGCCGCCCCCGCCGCGCCACCGGCCATTACTTCGTGCGCGCCAGGGAG
ATGGGCGCCCCCGACGCTTGTAACCACGCCTTGCACTCGTGGGTGGAAGG
AAACACCCTCCGCACCCTCGACGCCGGTCGCTACGTCCCCCTAGACAAGG
CCGTGCCGCTCGTGCGCAGCACCATCAGTATCGCCTTCAGTCATGACGCC
CGTTACTACGCTTCCACCCACGGCGATCACACCGTCAAGGTCTTCGAGTA
CCCCTCTGGCAACCAGATTGCCTGTTTAGAGGGGCATCCGCGCACGCCTT
GGACCGTGCGCTTTCATCCCACCGACTCTTCCATCCTCGCCTCGGGCTGT
ATTGGCCATGAGTGTCGCATCTGGAACGTTGCCAAGAAAGACTGCATCCG
CCGTCACACCTTTGGTGCCAGCATTTCCTGCGTCAGCTTCTCGCCCGACG
GCTCGTTGCTCGCCGTCACCTCCGGTCGCAAGTTGATGTTGTGGCAATGG
ATGCAACCCACTGCAGACAACGATCCCAACACTTCTTCAGAGCTCGACGG
CCACAATCGACCAGGCCTTCCACGTCAGGTTATCGAGGGCCGTCAACCTT
TTCACATGGTCGACTTTCACCCCTCCGGCACCATGCTCATGACGGGCGAG
AAGAACGAGACGCGTACAACCTCGCTCGTACACGAGGCTCCCAACACTGC
CAGGGAGCAGTTCACCCTCAAACTCGTCGTGCATCGCTTCAACAGCCGCC
TAGGCGACAAGTATTCCGAGCCTATTCTCGTCGTTCCTCGCGCTGTCGCG
TACAACGATGCAGGCATCCACTTCTCGCCGTGCGGTACCATGCTTGCTGC
ATGTATTCCCATCCCGTGCGATCAACCCAACGACTTTCATATAGCCGTCA
TGTCGCTCGTTAAACGGGGAAATGTCAACATTGGCACCGTCTTGCATAGT
TCCCCCTTGGATGCCGGAAGAGTCAGTGCGCTTACCAATCTCAAGTTCTC
CCCTACCTCTACCCATCTTCTCGCTGGTTTCTCTTTTCGCTCTACCAACC
CCGTTCTTCGCGTACAAGCCGAACATTACGATGCTACCGCGGGCGATCGG
CCAGACGCACTTGATCGCCGGCCACCGCAGGTGCGCGTTGTGGACATCTA
CCATATTAGTCCACGCTTCGAGTTGATCCGAAGCTTGTGCGCTGACATGG
ACGTCAGTGAGGGGCATACCGGAGGTCCGGAAGACGAGATTAACGTCGCA
GTGTTTGCCCCCAACGTTGGCGTGGCCGATGGCATTGTGTATGGCACACA
AAAGGGGCGTATTCGCATATTCCAGCAAGCAACGGGTCCTGTTTCGAAGG
TCGTTTCTTTTGCGGAGTGTGATGCGGAGGAGAGTATTTCAGATTGGACA
GGCGATAATCCCAATGGATGGTGCGAGAATGGGCAACAACGTTCGTTACC
GCGGAGCAATTTGACCGCCCCTCCCTATATGTTGCGACCGCTTCCTTCGT
CGGGAAACAGTCGGCGTCGCTTGCCATATCGCACCCATCTGGTATGA
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