Ggra642.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra642.t1
Unique NameGgra642.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length239
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000243_piloncontigtig00000243_pilon:55486..56202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra642Ggra642Gracilaria gracilis GNS1m malegenetig00000243_pilon 55486..56202 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra642.t1.stop1Ggra642.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000243_pilon 55486..55488 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra642.t1.CDS1Ggra642.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000243_pilon 55486..56202 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra642.t1.exon1Ggra642.t1.exon1Gracilaria gracilis GNS1m maleexontig00000243_pilon 55486..56202 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra642.t1.start1Ggra642.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000243_pilon 56200..56202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra642.t1Ggra642.t1Gracilaria gracilis GNS1m malepolypeptidetig00000243_pilon 55486..56202 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra642.t1 ID=Ggra642.t1|Name=Ggra642.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=239bp
MDSRRNLRGEKRVGFVKSWSRSFVGLLLLTSGGQRPQVFAQLQVPRRQQL
AQWEYSKTRSSFVELQTEREKRQRDADLPQLILPARLLRFILFHVLVVRP
MIQDAELSRYLLLNPTTGKQLQLKSISRLCRAFLSSCDPALGMLTPMDLR
NAYASMMMDLYRKRKVFAGLTETQFLQKISKQKNTSPEQLRRTYVAYDQR
KAHDPCELMTFWSATLGVQWRPNGAQQSDDHGMALIQK*
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spliced messenger RNA

>Ggra642.t1 ID=Ggra642.t1|Name=Ggra642.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=717bp|location=Sequence derived from alignment at tig00000243_pilon:55486..56202- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAGCAGAAGGAATTTGAGAGGTGAGAAACGTGTTGGATTTGTCAA
GAGCTGGTCCAGGAGTTTCGTAGGCCTTCTTTTGCTGACCTCCGGTGGGC
AAAGACCACAGGTCTTTGCCCAGCTTCAAGTGCCTCGCAGACAACAACTT
GCACAATGGGAATATTCAAAGACAAGAAGCAGTTTTGTGGAACTGCAGAC
GGAGAGGGAGAAGCGCCAGCGTGATGCAGATTTGCCTCAACTCATTCTTC
CTGCGCGGTTACTGCGATTCATTTTGTTTCACGTTCTGGTAGTGAGGCCG
ATGATTCAGGACGCTGAGCTGAGCAGATATCTCCTGCTGAACCCAACGAC
GGGCAAGCAGCTTCAGCTGAAGTCGATATCAAGACTTTGCAGAGCTTTTC
TGAGCTCATGTGATCCTGCATTAGGTATGCTGACGCCCATGGACTTGCGA
AACGCTTACGCATCCATGATGATGGACTTGTATCGCAAGAGGAAAGTTTT
CGCGGGTCTAACGGAGACTCAGTTTCTACAAAAGATATCGAAGCAAAAGA
ACACCTCCCCGGAGCAGCTCCGTCGAACGTACGTTGCCTATGACCAAAGA
AAAGCGCATGACCCCTGCGAACTGATGACGTTTTGGTCTGCGACTTTGGG
GGTGCAATGGAGACCCAACGGGGCGCAGCAATCTGATGACCACGGGATGG
CACTAATTCAAAAGTAA
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protein sequence of Ggra642.t1

>Ggra642.t1 ID=Ggra642.t1|Name=Ggra642.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=239bp
MDSRRNLRGEKRVGFVKSWSRSFVGLLLLTSGGQRPQVFAQLQVPRRQQL
AQWEYSKTRSSFVELQTEREKRQRDADLPQLILPARLLRFILFHVLVVRP
MIQDAELSRYLLLNPTTGKQLQLKSISRLCRAFLSSCDPALGMLTPMDLR
NAYASMMMDLYRKRKVFAGLTETQFLQKISKQKNTSPEQLRRTYVAYDQR
KAHDPCELMTFWSATLGVQWRPNGAQQSDDHGMALIQK*
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mRNA from alignment at tig00000243_pilon:55486..56202-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra642.t1 ID=Ggra642.t1|Name=Ggra642.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=717bp|location=Sequence derived from alignment at tig00000243_pilon:55486..56202- (Gracilaria gracilis GNS1m male)
ATGGACAGCAGAAGGAATTTGAGAGGTGAGAAACGTGTTGGATTTGTCAA
GAGCTGGTCCAGGAGTTTCGTAGGCCTTCTTTTGCTGACCTCCGGTGGGC
AAAGACCACAGGTCTTTGCCCAGCTTCAAGTGCCTCGCAGACAACAACTT
GCACAATGGGAATATTCAAAGACAAGAAGCAGTTTTGTGGAACTGCAGAC
GGAGAGGGAGAAGCGCCAGCGTGATGCAGATTTGCCTCAACTCATTCTTC
CTGCGCGGTTACTGCGATTCATTTTGTTTCACGTTCTGGTAGTGAGGCCG
ATGATTCAGGACGCTGAGCTGAGCAGATATCTCCTGCTGAACCCAACGAC
GGGCAAGCAGCTTCAGCTGAAGTCGATATCAAGACTTTGCAGAGCTTTTC
TGAGCTCATGTGATCCTGCATTAGGTATGCTGACGCCCATGGACTTGCGA
AACGCTTACGCATCCATGATGATGGACTTGTATCGCAAGAGGAAAGTTTT
CGCGGGTCTAACGGAGACTCAGTTTCTACAAAAGATATCGAAGCAAAAGA
ACACCTCCCCGGAGCAGCTCCGTCGAACGTACGTTGCCTATGACCAAAGA
AAAGCGCATGACCCCTGCGAACTGATGACGTTTTGGTCTGCGACTTTGGG
GGTGCAATGGAGACCCAACGGGGCGCAGCAATCTGATGACCACGGGATGG
CACTAATTCAAAAGTAA
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Coding sequence (CDS) from alignment at tig00000243_pilon:55486..56202-

>Ggra642.t1 ID=Ggra642.t1|Name=Ggra642.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=717bp|location=Sequence derived from alignment at tig00000243_pilon:55486..56202- (Gracilaria gracilis GNS1m male)
ATGGACAGCAGAAGGAATTTGAGAGGTGAGAAACGTGTTGGATTTGTCAA
GAGCTGGTCCAGGAGTTTCGTAGGCCTTCTTTTGCTGACCTCCGGTGGGC
AAAGACCACAGGTCTTTGCCCAGCTTCAAGTGCCTCGCAGACAACAACTT
GCACAATGGGAATATTCAAAGACAAGAAGCAGTTTTGTGGAACTGCAGAC
GGAGAGGGAGAAGCGCCAGCGTGATGCAGATTTGCCTCAACTCATTCTTC
CTGCGCGGTTACTGCGATTCATTTTGTTTCACGTTCTGGTAGTGAGGCCG
ATGATTCAGGACGCTGAGCTGAGCAGATATCTCCTGCTGAACCCAACGAC
GGGCAAGCAGCTTCAGCTGAAGTCGATATCAAGACTTTGCAGAGCTTTTC
TGAGCTCATGTGATCCTGCATTAGGTATGCTGACGCCCATGGACTTGCGA
AACGCTTACGCATCCATGATGATGGACTTGTATCGCAAGAGGAAAGTTTT
CGCGGGTCTAACGGAGACTCAGTTTCTACAAAAGATATCGAAGCAAAAGA
ACACCTCCCCGGAGCAGCTCCGTCGAACGTACGTTGCCTATGACCAAAGA
AAAGCGCATGACCCCTGCGAACTGATGACGTTTTGGTCTGCGACTTTGGG
GGTGCAATGGAGACCCAACGGGGCGCAGCAATCTGATGACCACGGGATGG
CACTAATTCAAAAGTAA
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