Ggra6419.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6419.t1
Unique Name	Ggra6419.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	738

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000918_pilon	contig	tig00000918_pilon:128752..130965 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMP297CT
PFAMs	PDZ_2,Peptidase_S41
Max annot lvl	2759\|Eukaryota
Evalue	3.56e-153
EggNOG OGs	COG0793@1\|root,2RW0A@2759\|Eukaryota
Description	Peptidase family S41
COG category	M

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6419	Ggra6419	Gracilaria gracilis GNS1m male	gene	tig00000918_pilon 128752..130965 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6419.t1.stop1	Ggra6419.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000918_pilon 128752..128754 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6419.t1.CDS1	Ggra6419.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000918_pilon 128752..130965 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6419.t1.exon1	Ggra6419.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000918_pilon 128752..130965 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6419.t1.start1	Ggra6419.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000918_pilon 130963..130965 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6419.t1	Ggra6419.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000918_pilon 128752..130965 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000918_pilon:128752..130965-
coding sequence from alignment at tig00000918_pilon:128752..130965-

mRNA sequence

>Ggra6419.t1 ID=Ggra6419.t1|Name=Ggra6419.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=738bp
MERSQLSAAAFVSFLPAHPPSISSAQFSFSPRTSVSLTVRHASFSIRTST
RFARLRRANPLQIRASSSEPANSAKAGDESFSTQSQSTPDVTPVPAVDTS
VRSTEQSLPLNQPQASAQSGSGHSDTEQHSQDVLTGWFTWSLASLKRFFA
PGGFFWGLATGISLSVAFLFFQWSADGDSILKEKVTLFDFILQDISSSYV
EKVDINRLFETGVNSMLGTLDPYTQFENNAQAAEMSLKTNGRYAGVGLGI
TLDDQVGNTPKDKKVVVVSAFEGYAFDAGVRPGDVIESVAGQPIGGLSLE
KVTEMLRGEPGTTVSVTVRREGALEPLSFDLSRQSVRIKDVPAFGFIGNP
QDRIGYIRLQSFAKDAAAEVKLAVKSLGHSAGKSNPNLRGLVLDLRGNPG
GLLNAAIEVSELFLPRDSVIVSTKGRGLAPNPTYVSSKNPIIPASMPLVV
LVNGQSASASEIVAGAVQDMDRGVIVGTKSFGKGLVQNVQELPFNTALKY
TVGKYYTPSGRCIQSINYEQAEGDGPFEIRKVEETERTEFKTNRGRTVRD
GGGIEPDVEVLRRPSFLEQALLRQNMYFRFANRFGAQMKIEKLPESFKVE
DEVYKDFVSFVTTSEFKYESRFDDAFEQLDSMFDEVGYQEARSKVTDLKT
ATKLEMRGDFLRHEKSIKNQIESAIRFRFQPDSERIIAELKNDDQLAEAV
RLIKEKGEYERLLGDPSVNGQGSEHVVVNDTALITSR*

spliced messenger RNA

>Ggra6419.t1 ID=Ggra6419.t1|Name=Ggra6419.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2214bp|location=Sequence derived from alignment at tig00000918_pilon:128752..130965- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACGTTCTCAACTTTCTGCTGCTGCGTTTGTCTCCTTTCTTCCCGC
CCATCCGCCTTCAATATCGTCTGCTCAATTTTCTTTCTCGCCACGCACGT
CCGTCAGCCTCACTGTTCGTCATGCGTCGTTTTCAATACGAACCTCTACC
CGATTCGCTCGTCTGCGCCGAGCAAACCCTCTTCAAATACGAGCCAGTTC
TTCTGAGCCTGCAAATTCTGCAAAAGCGGGCGATGAATCATTTTCGACTC
AATCCCAATCGACGCCAGATGTCACGCCCGTACCCGCCGTGGACACCTCT
GTTCGGTCAACTGAACAGTCACTGCCACTGAATCAACCCCAAGCGAGTGC
GCAATCCGGGAGCGGCCACTCCGACACTGAGCAACATTCACAGGATGTTC
TCACTGGTTGGTTTACCTGGAGTCTCGCTTCACTGAAGCGCTTTTTCGCT
CCGGGTGGCTTTTTTTGGGGTCTAGCCACTGGAATCTCCTTGTCGGTAGC
CTTCTTGTTCTTCCAGTGGTCGGCGGATGGCGATAGCATACTAAAGGAAA
AAGTTACCTTGTTTGACTTTATCCTTCAAGACATTAGCTCCTCATACGTG
GAAAAGGTTGATATCAATCGCTTGTTTGAAACAGGTGTTAACTCCATGCT
AGGCACTCTAGACCCATACACCCAGTTTGAAAACAATGCGCAAGCAGCTG
AGATGTCGCTCAAGACCAATGGCCGGTACGCGGGCGTCGGGTTGGGTATC
ACGCTAGACGATCAAGTTGGAAACACCCCGAAAGACAAGAAGGTCGTTGT
CGTTTCTGCTTTCGAGGGATACGCCTTCGACGCTGGTGTTCGCCCTGGAG
ATGTTATTGAAAGCGTTGCTGGTCAACCCATTGGTGGGCTCTCTTTAGAG
AAAGTCACCGAAATGCTTAGAGGCGAACCAGGAACTACCGTTAGCGTAAC
GGTCCGTCGTGAGGGAGCTCTGGAACCTCTGTCATTTGATCTGTCTCGTC
AAAGTGTTCGTATCAAGGATGTGCCTGCTTTTGGATTTATCGGCAATCCA
CAGGATCGAATAGGATACATACGCTTACAATCGTTTGCAAAGGACGCCGC
AGCAGAAGTGAAACTTGCCGTTAAAAGTTTGGGTCACTCTGCAGGCAAGT
CCAACCCCAATTTGCGTGGGTTAGTGCTTGATTTGCGAGGAAATCCAGGA
GGTCTTCTGAACGCAGCAATAGAAGTTTCTGAACTGTTTCTGCCTCGAGA
TTCTGTCATTGTTTCCACCAAGGGGCGGGGACTGGCTCCGAATCCCACTT
ACGTATCTTCCAAGAATCCAATCATTCCTGCCTCTATGCCTCTGGTTGTG
CTCGTAAATGGACAGAGTGCTTCAGCTTCCGAAATTGTTGCTGGTGCTGT
ACAAGATATGGACAGGGGAGTCATTGTAGGCACGAAAAGCTTTGGGAAAG
GACTAGTTCAGAATGTCCAAGAGCTCCCGTTCAACACAGCGTTGAAGTAC
ACCGTGGGAAAATACTACACTCCAAGCGGAAGATGTATTCAGTCTATAAA
TTACGAGCAAGCAGAAGGTGATGGACCTTTTGAAATAAGGAAAGTTGAAG
AGACTGAGCGAACGGAGTTCAAAACAAATCGAGGAAGAACTGTACGAGAC
GGCGGAGGGATTGAACCAGATGTAGAGGTTCTCCGTCGACCAAGCTTCCT
GGAACAGGCGCTCCTTCGGCAGAACATGTACTTCCGATTTGCAAATCGCT
TTGGGGCTCAAATGAAAATAGAGAAATTACCGGAGAGCTTCAAAGTTGAA
GACGAAGTATACAAGGATTTTGTGTCTTTCGTCACAACCAGTGAGTTTAA
ATATGAATCTAGGTTTGACGATGCCTTCGAACAATTAGATAGCATGTTTG
ACGAAGTTGGATATCAGGAGGCAAGGTCGAAAGTAACGGACTTGAAAACG
GCCACGAAGCTTGAAATGAGGGGCGACTTCCTCCGTCATGAGAAATCCAT
CAAGAATCAGATAGAATCGGCTATTCGTTTTCGATTTCAACCCGACTCAG
AAAGAATCATTGCCGAATTGAAAAATGATGACCAGCTTGCTGAGGCTGTG
AGATTAATCAAGGAGAAGGGTGAATACGAACGCTTGTTGGGCGATCCTAG
CGTTAATGGTCAGGGATCTGAACATGTGGTCGTCAACGACACAGCGTTAA
TTACTTCAAGATAG

protein sequence of Ggra6419.t1

>Ggra6419.t1 ID=Ggra6419.t1|Name=Ggra6419.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=738bp
MERSQLSAAAFVSFLPAHPPSISSAQFSFSPRTSVSLTVRHASFSIRTST
RFARLRRANPLQIRASSSEPANSAKAGDESFSTQSQSTPDVTPVPAVDTS
VRSTEQSLPLNQPQASAQSGSGHSDTEQHSQDVLTGWFTWSLASLKRFFA
PGGFFWGLATGISLSVAFLFFQWSADGDSILKEKVTLFDFILQDISSSYV
EKVDINRLFETGVNSMLGTLDPYTQFENNAQAAEMSLKTNGRYAGVGLGI
TLDDQVGNTPKDKKVVVVSAFEGYAFDAGVRPGDVIESVAGQPIGGLSLE
KVTEMLRGEPGTTVSVTVRREGALEPLSFDLSRQSVRIKDVPAFGFIGNP
QDRIGYIRLQSFAKDAAAEVKLAVKSLGHSAGKSNPNLRGLVLDLRGNPG
GLLNAAIEVSELFLPRDSVIVSTKGRGLAPNPTYVSSKNPIIPASMPLVV
LVNGQSASASEIVAGAVQDMDRGVIVGTKSFGKGLVQNVQELPFNTALKY
TVGKYYTPSGRCIQSINYEQAEGDGPFEIRKVEETERTEFKTNRGRTVRD
GGGIEPDVEVLRRPSFLEQALLRQNMYFRFANRFGAQMKIEKLPESFKVE
DEVYKDFVSFVTTSEFKYESRFDDAFEQLDSMFDEVGYQEARSKVTDLKT
ATKLEMRGDFLRHEKSIKNQIESAIRFRFQPDSERIIAELKNDDQLAEAV
RLIKEKGEYERLLGDPSVNGQGSEHVVVNDTALITSR*

mRNA from alignment at tig00000918_pilon:128752..130965-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6419.t1 ID=Ggra6419.t1|Name=Ggra6419.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2214bp|location=Sequence derived from alignment at tig00000918_pilon:128752..130965- (Gracilaria gracilis GNS1m male)
ATGGAACGTTCTCAACTTTCTGCTGCTGCGTTTGTCTCCTTTCTTCCCGC
CCATCCGCCTTCAATATCGTCTGCTCAATTTTCTTTCTCGCCACGCACGT
CCGTCAGCCTCACTGTTCGTCATGCGTCGTTTTCAATACGAACCTCTACC
CGATTCGCTCGTCTGCGCCGAGCAAACCCTCTTCAAATACGAGCCAGTTC
TTCTGAGCCTGCAAATTCTGCAAAAGCGGGCGATGAATCATTTTCGACTC
AATCCCAATCGACGCCAGATGTCACGCCCGTACCCGCCGTGGACACCTCT
GTTCGGTCAACTGAACAGTCACTGCCACTGAATCAACCCCAAGCGAGTGC
GCAATCCGGGAGCGGCCACTCCGACACTGAGCAACATTCACAGGATGTTC
TCACTGGTTGGTTTACCTGGAGTCTCGCTTCACTGAAGCGCTTTTTCGCT
CCGGGTGGCTTTTTTTGGGGTCTAGCCACTGGAATCTCCTTGTCGGTAGC
CTTCTTGTTCTTCCAGTGGTCGGCGGATGGCGATAGCATACTAAAGGAAA
AAGTTACCTTGTTTGACTTTATCCTTCAAGACATTAGCTCCTCATACGTG
GAAAAGGTTGATATCAATCGCTTGTTTGAAACAGGTGTTAACTCCATGCT
AGGCACTCTAGACCCATACACCCAGTTTGAAAACAATGCGCAAGCAGCTG
AGATGTCGCTCAAGACCAATGGCCGGTACGCGGGCGTCGGGTTGGGTATC
ACGCTAGACGATCAAGTTGGAAACACCCCGAAAGACAAGAAGGTCGTTGT
CGTTTCTGCTTTCGAGGGATACGCCTTCGACGCTGGTGTTCGCCCTGGAG
ATGTTATTGAAAGCGTTGCTGGTCAACCCATTGGTGGGCTCTCTTTAGAG
AAAGTCACCGAAATGCTTAGAGGCGAACCAGGAACTACCGTTAGCGTAAC
GGTCCGTCGTGAGGGAGCTCTGGAACCTCTGTCATTTGATCTGTCTCGTC
AAAGTGTTCGTATCAAGGATGTGCCTGCTTTTGGATTTATCGGCAATCCA
CAGGATCGAATAGGATACATACGCTTACAATCGTTTGCAAAGGACGCCGC
AGCAGAAGTGAAACTTGCCGTTAAAAGTTTGGGTCACTCTGCAGGCAAGT
CCAACCCCAATTTGCGTGGGTTAGTGCTTGATTTGCGAGGAAATCCAGGA
GGTCTTCTGAACGCAGCAATAGAAGTTTCTGAACTGTTTCTGCCTCGAGA
TTCTGTCATTGTTTCCACCAAGGGGCGGGGACTGGCTCCGAATCCCACTT
ACGTATCTTCCAAGAATCCAATCATTCCTGCCTCTATGCCTCTGGTTGTG
CTCGTAAATGGACAGAGTGCTTCAGCTTCCGAAATTGTTGCTGGTGCTGT
ACAAGATATGGACAGGGGAGTCATTGTAGGCACGAAAAGCTTTGGGAAAG
GACTAGTTCAGAATGTCCAAGAGCTCCCGTTCAACACAGCGTTGAAGTAC
ACCGTGGGAAAATACTACACTCCAAGCGGAAGATGTATTCAGTCTATAAA
TTACGAGCAAGCAGAAGGTGATGGACCTTTTGAAATAAGGAAAGTTGAAG
AGACTGAGCGAACGGAGTTCAAAACAAATCGAGGAAGAACTGTACGAGAC
GGCGGAGGGATTGAACCAGATGTAGAGGTTCTCCGTCGACCAAGCTTCCT
GGAACAGGCGCTCCTTCGGCAGAACATGTACTTCCGATTTGCAAATCGCT
TTGGGGCTCAAATGAAAATAGAGAAATTACCGGAGAGCTTCAAAGTTGAA
GACGAAGTATACAAGGATTTTGTGTCTTTCGTCACAACCAGTGAGTTTAA
ATATGAATCTAGGTTTGACGATGCCTTCGAACAATTAGATAGCATGTTTG
ACGAAGTTGGATATCAGGAGGCAAGGTCGAAAGTAACGGACTTGAAAACG
GCCACGAAGCTTGAAATGAGGGGCGACTTCCTCCGTCATGAGAAATCCAT
CAAGAATCAGATAGAATCGGCTATTCGTTTTCGATTTCAACCCGACTCAG
AAAGAATCATTGCCGAATTGAAAAATGATGACCAGCTTGCTGAGGCTGTG
AGATTAATCAAGGAGAAGGGTGAATACGAACGCTTGTTGGGCGATCCTAG
CGTTAATGGTCAGGGATCTGAACATGTGGTCGTCAACGACACAGCGTTAA
TTACTTCAAGATAG

Coding sequence (CDS) from alignment at tig00000918_pilon:128752..130965-

>Ggra6419.t1 ID=Ggra6419.t1|Name=Ggra6419.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2214bp|location=Sequence derived from alignment at tig00000918_pilon:128752..130965- (Gracilaria gracilis GNS1m male)
ATGGAACGTTCTCAACTTTCTGCTGCTGCGTTTGTCTCCTTTCTTCCCGC
CCATCCGCCTTCAATATCGTCTGCTCAATTTTCTTTCTCGCCACGCACGT
CCGTCAGCCTCACTGTTCGTCATGCGTCGTTTTCAATACGAACCTCTACC
CGATTCGCTCGTCTGCGCCGAGCAAACCCTCTTCAAATACGAGCCAGTTC
TTCTGAGCCTGCAAATTCTGCAAAAGCGGGCGATGAATCATTTTCGACTC
AATCCCAATCGACGCCAGATGTCACGCCCGTACCCGCCGTGGACACCTCT
GTTCGGTCAACTGAACAGTCACTGCCACTGAATCAACCCCAAGCGAGTGC
GCAATCCGGGAGCGGCCACTCCGACACTGAGCAACATTCACAGGATGTTC
TCACTGGTTGGTTTACCTGGAGTCTCGCTTCACTGAAGCGCTTTTTCGCT
CCGGGTGGCTTTTTTTGGGGTCTAGCCACTGGAATCTCCTTGTCGGTAGC
CTTCTTGTTCTTCCAGTGGTCGGCGGATGGCGATAGCATACTAAAGGAAA
AAGTTACCTTGTTTGACTTTATCCTTCAAGACATTAGCTCCTCATACGTG
GAAAAGGTTGATATCAATCGCTTGTTTGAAACAGGTGTTAACTCCATGCT
AGGCACTCTAGACCCATACACCCAGTTTGAAAACAATGCGCAAGCAGCTG
AGATGTCGCTCAAGACCAATGGCCGGTACGCGGGCGTCGGGTTGGGTATC
ACGCTAGACGATCAAGTTGGAAACACCCCGAAAGACAAGAAGGTCGTTGT
CGTTTCTGCTTTCGAGGGATACGCCTTCGACGCTGGTGTTCGCCCTGGAG
ATGTTATTGAAAGCGTTGCTGGTCAACCCATTGGTGGGCTCTCTTTAGAG
AAAGTCACCGAAATGCTTAGAGGCGAACCAGGAACTACCGTTAGCGTAAC
GGTCCGTCGTGAGGGAGCTCTGGAACCTCTGTCATTTGATCTGTCTCGTC
AAAGTGTTCGTATCAAGGATGTGCCTGCTTTTGGATTTATCGGCAATCCA
CAGGATCGAATAGGATACATACGCTTACAATCGTTTGCAAAGGACGCCGC
AGCAGAAGTGAAACTTGCCGTTAAAAGTTTGGGTCACTCTGCAGGCAAGT
CCAACCCCAATTTGCGTGGGTTAGTGCTTGATTTGCGAGGAAATCCAGGA
GGTCTTCTGAACGCAGCAATAGAAGTTTCTGAACTGTTTCTGCCTCGAGA
TTCTGTCATTGTTTCCACCAAGGGGCGGGGACTGGCTCCGAATCCCACTT
ACGTATCTTCCAAGAATCCAATCATTCCTGCCTCTATGCCTCTGGTTGTG
CTCGTAAATGGACAGAGTGCTTCAGCTTCCGAAATTGTTGCTGGTGCTGT
ACAAGATATGGACAGGGGAGTCATTGTAGGCACGAAAAGCTTTGGGAAAG
GACTAGTTCAGAATGTCCAAGAGCTCCCGTTCAACACAGCGTTGAAGTAC
ACCGTGGGAAAATACTACACTCCAAGCGGAAGATGTATTCAGTCTATAAA
TTACGAGCAAGCAGAAGGTGATGGACCTTTTGAAATAAGGAAAGTTGAAG
AGACTGAGCGAACGGAGTTCAAAACAAATCGAGGAAGAACTGTACGAGAC
GGCGGAGGGATTGAACCAGATGTAGAGGTTCTCCGTCGACCAAGCTTCCT
GGAACAGGCGCTCCTTCGGCAGAACATGTACTTCCGATTTGCAAATCGCT
TTGGGGCTCAAATGAAAATAGAGAAATTACCGGAGAGCTTCAAAGTTGAA
GACGAAGTATACAAGGATTTTGTGTCTTTCGTCACAACCAGTGAGTTTAA
ATATGAATCTAGGTTTGACGATGCCTTCGAACAATTAGATAGCATGTTTG
ACGAAGTTGGATATCAGGAGGCAAGGTCGAAAGTAACGGACTTGAAAACG
GCCACGAAGCTTGAAATGAGGGGCGACTTCCTCCGTCATGAGAAATCCAT
CAAGAATCAGATAGAATCGGCTATTCGTTTTCGATTTCAACCCGACTCAG
AAAGAATCATTGCCGAATTGAAAAATGATGACCAGCTTGCTGAGGCTGTG
AGATTAATCAAGGAGAAGGGTGAATACGAACGCTTGTTGGGCGATCCTAG
CGTTAATGGTCAGGGATCTGAACATGTGGTCGTCAACGACACAGCGTTAA
TTACTTCAAGATAG