Ggra6417.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6417.t1
Unique Name	Ggra6417.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	517

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000918_pilon	contig	tig00000918_pilon:119094..120644 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1328313.DS2_18273
PFAMs	Big_2,UnbV_ASPIC,VCBS
Max annot lvl	1236\|Gammaproteobacteria
Evalue	9.32e-48
EggNOG OGs	COG2931@1\|root,COG5492@1\|root,COG2931@2\|Bacteria,COG5492@2\|Bacteria,1R7ZV@1224\|Proteobacteria,1RPUG@1236\|Gammaproteobacteria,464WY@72275\|Alteromonadaceae
Description	ASPIC and UnbV
COG category	NQ

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6417	Ggra6417	Gracilaria gracilis GNS1m male	gene	tig00000918_pilon 119094..120644 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6417.t1.start1	Ggra6417.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000918_pilon 119094..119096 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6417.t1.CDS1	Ggra6417.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000918_pilon 119094..120644 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6417.t1.exon1	Ggra6417.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000918_pilon 119094..120644 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6417.t1.stop1	Ggra6417.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000918_pilon 120642..120644 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6417.t1	Ggra6417.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000918_pilon 119094..120644 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000918_pilon:119094..120644+
coding sequence from alignment at tig00000918_pilon:119094..120644+

mRNA sequence

>Ggra6417.t1 ID=Ggra6417.t1|Name=Ggra6417.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=517bp
MSAAAAFAKLLPLLLLLLLLLLLLPGVAAQLRPRFRDVSAAVGLNVNKPR
LKKYGGPTVADLDRDGYPDLIFCHHDAGYADLYFNNRDGSFTQSKWRVWR
DTHAIIAGPISPYNRAMRFVMSVGGNFGRRPTRPIMFEVNPRTRQISDVT
ASVGLDKQGGRGRTAFFMSISGRKHVAFPDIVFMNAQPKGFRAPDNFAYE
ATGNGKYKPRYMSNFADDQNWYGGLTDLDGDGLMEIVSYWKLKVWKMVRP
YRFVEISDSVLPPEIDRSGVVAVAELDYDNDGDFDLYVARTKSGDLKWVP
GTVFHDYLLENRNGKYVDVSEKARIPRGTTSRGVTVGDFNNDGYIDILVT
QYRAADIMLLNRGDGTFRRADGLIWRPKYVRGDNAVAVDYDNDGRVDLIS
SQGDQHVPKWGGNYKVFRNVLRKSWRTRYISVRVGNAINFSATPLHATVL
VVAGNLRMIRRVGANGNAVSHAYLETVHFGLGSRRKVDKIYVKYSSGYVG
MARNVRDGRTIVIGRI*

spliced messenger RNA

>Ggra6417.t1 ID=Ggra6417.t1|Name=Ggra6417.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1551bp|location=Sequence derived from alignment at tig00000918_pilon:119094..120644+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCCGCCGCTGCTTTCGCAAAGCTCctgccgctgctgctgctgct
gctgctgctgctgctgctgctgcCTGGCGTGGCGGCGCAGCTGCGTCCGC
GCTTCCGCGACGTGTCGGCTGCGGTTGGGCTCAATGTCAACAAGCCCAGG
CTCAAAAAGTATGGCGGGCCCACCGTGGCCGATCTGGATCGCGACGGCTA
CCCCGACCTCATCTTCTGCCACCACGACGCGGGCTACGCCGACCTATACT
TCAACAACCGCGACGGCTCCTTCACGCAGTCCAAGTGGCGCGTGTGGCGC
GACACGCACGCCATCATCGCCGGCCCCATCTCGCCGTACAACCGCGCCAT
GCGCTTCGTCATGTCCGTGGGCGGCAATTTTGGGCGCCGACCCACGCGCC
CCATCATGTTCGAGGTGAACCCCCGCACGCGCCAGATCAGCGACGTCACC
GCCAGCGTCGGCTTGGACAAGCAGGGCGGGCGCGGACGTACGGCGTTTTT
CATGAGTATTTCCGGCAGAAAACATGTCGCATTCCCGGACATTGTGTTCA
TGAACGCGCAGCCGAAGGGCTTCCGCGCGCCGGACAACTTTGCGTACGAG
GCCACGGGCAATGGCAAGTACAAGCCGCGCTACATGTCCAACTTTGCAGA
CGATCAGAATTGGTACGGCGGCCTGACCGACCTGGACGGCGACGGGCTGA
TGGAGATTGTGTCGTACTGGAAGCTCAAGGTGTGGAAGATGGTGCGGCCG
TACAGGTTTGTCGAAATCTCGGACAGCGTACTGCCGCCGGAGATTGACCG
CAGCGGCGTGGTGGCCGTCGCCGAACTGGACTACGACAACGACGGCGATT
TCGATCTGTACGTCGCTCGCACCAAGTCGGGCGACCTCAAGTGGGTGCCC
GGCACCGTGTTCCACGACTACCTGCTGGAGAACCGCAACGGCAAGTATGT
GGACGTGAGCGAAAAGGCGCGCATCCCGCGCGGCACCACGTCGAGGGGCG
TCACCGTGGGCGACTTTAACAACGACGGCTACATCGACATCCTGGTGACG
CAGTACCGCGCCGCCGATATCATGCTGCTCAACCGGGGTGACGGCACGTT
CCGGCGCGCGGACGGGCTCATCTGGAGACCCAAGTACGTGCGCGGCGACA
ATGCTGTGGCCGTGGACTACGATAACGACGGGCGCGTGGACCTGATTTCC
AGCCAGGGCGATCAGCATGTGCCCAAGTGGGGCGGCAACTACAAGGTGTT
CCGCAACGTGCTGCGCAAGTCGTGGCGTACCAGGTACATCTCGGTGCGGG
TTGGCAATGCTATCAACTTTAGCGCCACGCCGTTGCATGCTACGGTGCTG
GTGGTGGCGGGCAACTTGCGTATGATTCGGCGCGTGGGCGCCAATGGAAA
CGCTGTGTCGCACGCGTACCTGGAGACGGTTCACTTTGGACTGGGGTCGA
GAAGAAAAGTGGACAAGATCTACGTCAAGTATAGCAGCGGGTATGTGGGG
ATGGCGAGGAATGTGCGCGATGGCCGCACCATCGTGATCGGCAGAATATG
A

protein sequence of Ggra6417.t1

>Ggra6417.t1 ID=Ggra6417.t1|Name=Ggra6417.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=517bp
MSAAAAFAKLLPLLLLLLLLLLLLPGVAAQLRPRFRDVSAAVGLNVNKPR
LKKYGGPTVADLDRDGYPDLIFCHHDAGYADLYFNNRDGSFTQSKWRVWR
DTHAIIAGPISPYNRAMRFVMSVGGNFGRRPTRPIMFEVNPRTRQISDVT
ASVGLDKQGGRGRTAFFMSISGRKHVAFPDIVFMNAQPKGFRAPDNFAYE
ATGNGKYKPRYMSNFADDQNWYGGLTDLDGDGLMEIVSYWKLKVWKMVRP
YRFVEISDSVLPPEIDRSGVVAVAELDYDNDGDFDLYVARTKSGDLKWVP
GTVFHDYLLENRNGKYVDVSEKARIPRGTTSRGVTVGDFNNDGYIDILVT
QYRAADIMLLNRGDGTFRRADGLIWRPKYVRGDNAVAVDYDNDGRVDLIS
SQGDQHVPKWGGNYKVFRNVLRKSWRTRYISVRVGNAINFSATPLHATVL
VVAGNLRMIRRVGANGNAVSHAYLETVHFGLGSRRKVDKIYVKYSSGYVG
MARNVRDGRTIVIGRI*

mRNA from alignment at tig00000918_pilon:119094..120644+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6417.t1 ID=Ggra6417.t1|Name=Ggra6417.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1551bp|location=Sequence derived from alignment at tig00000918_pilon:119094..120644+ (Gracilaria gracilis GNS1m male)
ATGAGCGCCGCCGCTGCTTTCGCAAAGCTCctgccgctgctgctgctgct
gctgctgctgctgctgctgctgcCTGGCGTGGCGGCGCAGCTGCGTCCGC
GCTTCCGCGACGTGTCGGCTGCGGTTGGGCTCAATGTCAACAAGCCCAGG
CTCAAAAAGTATGGCGGGCCCACCGTGGCCGATCTGGATCGCGACGGCTA
CCCCGACCTCATCTTCTGCCACCACGACGCGGGCTACGCCGACCTATACT
TCAACAACCGCGACGGCTCCTTCACGCAGTCCAAGTGGCGCGTGTGGCGC
GACACGCACGCCATCATCGCCGGCCCCATCTCGCCGTACAACCGCGCCAT
GCGCTTCGTCATGTCCGTGGGCGGCAATTTTGGGCGCCGACCCACGCGCC
CCATCATGTTCGAGGTGAACCCCCGCACGCGCCAGATCAGCGACGTCACC
GCCAGCGTCGGCTTGGACAAGCAGGGCGGGCGCGGACGTACGGCGTTTTT
CATGAGTATTTCCGGCAGAAAACATGTCGCATTCCCGGACATTGTGTTCA
TGAACGCGCAGCCGAAGGGCTTCCGCGCGCCGGACAACTTTGCGTACGAG
GCCACGGGCAATGGCAAGTACAAGCCGCGCTACATGTCCAACTTTGCAGA
CGATCAGAATTGGTACGGCGGCCTGACCGACCTGGACGGCGACGGGCTGA
TGGAGATTGTGTCGTACTGGAAGCTCAAGGTGTGGAAGATGGTGCGGCCG
TACAGGTTTGTCGAAATCTCGGACAGCGTACTGCCGCCGGAGATTGACCG
CAGCGGCGTGGTGGCCGTCGCCGAACTGGACTACGACAACGACGGCGATT
TCGATCTGTACGTCGCTCGCACCAAGTCGGGCGACCTCAAGTGGGTGCCC
GGCACCGTGTTCCACGACTACCTGCTGGAGAACCGCAACGGCAAGTATGT
GGACGTGAGCGAAAAGGCGCGCATCCCGCGCGGCACCACGTCGAGGGGCG
TCACCGTGGGCGACTTTAACAACGACGGCTACATCGACATCCTGGTGACG
CAGTACCGCGCCGCCGATATCATGCTGCTCAACCGGGGTGACGGCACGTT
CCGGCGCGCGGACGGGCTCATCTGGAGACCCAAGTACGTGCGCGGCGACA
ATGCTGTGGCCGTGGACTACGATAACGACGGGCGCGTGGACCTGATTTCC
AGCCAGGGCGATCAGCATGTGCCCAAGTGGGGCGGCAACTACAAGGTGTT
CCGCAACGTGCTGCGCAAGTCGTGGCGTACCAGGTACATCTCGGTGCGGG
TTGGCAATGCTATCAACTTTAGCGCCACGCCGTTGCATGCTACGGTGCTG
GTGGTGGCGGGCAACTTGCGTATGATTCGGCGCGTGGGCGCCAATGGAAA
CGCTGTGTCGCACGCGTACCTGGAGACGGTTCACTTTGGACTGGGGTCGA
GAAGAAAAGTGGACAAGATCTACGTCAAGTATAGCAGCGGGTATGTGGGG
ATGGCGAGGAATGTGCGCGATGGCCGCACCATCGTGATCGGCAGAATATG
A

Coding sequence (CDS) from alignment at tig00000918_pilon:119094..120644+

>Ggra6417.t1 ID=Ggra6417.t1|Name=Ggra6417.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1551bp|location=Sequence derived from alignment at tig00000918_pilon:119094..120644+ (Gracilaria gracilis GNS1m male)
ATGAGCGCCGCCGCTGCTTTCGCAAAGCTCctgccgctgctgctgctgct
gctgctgctgctgctgctgctgcCTGGCGTGGCGGCGCAGCTGCGTCCGC
GCTTCCGCGACGTGTCGGCTGCGGTTGGGCTCAATGTCAACAAGCCCAGG
CTCAAAAAGTATGGCGGGCCCACCGTGGCCGATCTGGATCGCGACGGCTA
CCCCGACCTCATCTTCTGCCACCACGACGCGGGCTACGCCGACCTATACT
TCAACAACCGCGACGGCTCCTTCACGCAGTCCAAGTGGCGCGTGTGGCGC
GACACGCACGCCATCATCGCCGGCCCCATCTCGCCGTACAACCGCGCCAT
GCGCTTCGTCATGTCCGTGGGCGGCAATTTTGGGCGCCGACCCACGCGCC
CCATCATGTTCGAGGTGAACCCCCGCACGCGCCAGATCAGCGACGTCACC
GCCAGCGTCGGCTTGGACAAGCAGGGCGGGCGCGGACGTACGGCGTTTTT
CATGAGTATTTCCGGCAGAAAACATGTCGCATTCCCGGACATTGTGTTCA
TGAACGCGCAGCCGAAGGGCTTCCGCGCGCCGGACAACTTTGCGTACGAG
GCCACGGGCAATGGCAAGTACAAGCCGCGCTACATGTCCAACTTTGCAGA
CGATCAGAATTGGTACGGCGGCCTGACCGACCTGGACGGCGACGGGCTGA
TGGAGATTGTGTCGTACTGGAAGCTCAAGGTGTGGAAGATGGTGCGGCCG
TACAGGTTTGTCGAAATCTCGGACAGCGTACTGCCGCCGGAGATTGACCG
CAGCGGCGTGGTGGCCGTCGCCGAACTGGACTACGACAACGACGGCGATT
TCGATCTGTACGTCGCTCGCACCAAGTCGGGCGACCTCAAGTGGGTGCCC
GGCACCGTGTTCCACGACTACCTGCTGGAGAACCGCAACGGCAAGTATGT
GGACGTGAGCGAAAAGGCGCGCATCCCGCGCGGCACCACGTCGAGGGGCG
TCACCGTGGGCGACTTTAACAACGACGGCTACATCGACATCCTGGTGACG
CAGTACCGCGCCGCCGATATCATGCTGCTCAACCGGGGTGACGGCACGTT
CCGGCGCGCGGACGGGCTCATCTGGAGACCCAAGTACGTGCGCGGCGACA
ATGCTGTGGCCGTGGACTACGATAACGACGGGCGCGTGGACCTGATTTCC
AGCCAGGGCGATCAGCATGTGCCCAAGTGGGGCGGCAACTACAAGGTGTT
CCGCAACGTGCTGCGCAAGTCGTGGCGTACCAGGTACATCTCGGTGCGGG
TTGGCAATGCTATCAACTTTAGCGCCACGCCGTTGCATGCTACGGTGCTG
GTGGTGGCGGGCAACTTGCGTATGATTCGGCGCGTGGGCGCCAATGGAAA
CGCTGTGTCGCACGCGTACCTGGAGACGGTTCACTTTGGACTGGGGTCGA
GAAGAAAAGTGGACAAGATCTACGTCAAGTATAGCAGCGGGTATGTGGGG
ATGGCGAGGAATGTGCGCGATGGCCGCACCATCGTGATCGGCAGAATATG
A