Ggra6415.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6415.t1
Unique NameGgra6415.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length437
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000918_piloncontigtig00000918_pilon:115976..117286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706140.1
PFAMsDHQ_synthase,DHquinase_I
Max annot lvl2759|Eukaryota
KEGG rclassRC00847,RC00848
KEGG koko:K01735,ko:K03785
KEGG ReactionR03083,R03084
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
Evalue1.67e-156
EggNOG OGsCOG0169@1|root,KOG0692@2759|Eukaryota
EC4.2.1.10,4.2.3.4
Descriptionshikimate 3-dehydrogenase (NADP ) activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6415Ggra6415Gracilaria gracilis GNS1m malegenetig00000918_pilon 115976..117286 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6415.t1.stop1Ggra6415.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000918_pilon 115976..115978 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6415.t1.CDS1Ggra6415.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000918_pilon 115976..117286 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6415.t1.exon1Ggra6415.t1.exon1Gracilaria gracilis GNS1m maleexontig00000918_pilon 115976..117286 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6415.t1.start1Ggra6415.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000918_pilon 117284..117286 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6415.t1Ggra6415.t1Gracilaria gracilis GNS1m malepolypeptidetig00000918_pilon 115976..117286 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6415.t1 ID=Ggra6415.t1|Name=Ggra6415.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=437bp
MAPAATAAAAATATPTAAAAPHRDARPLPAAPRNVFVHDGDRQQPHKLHG
WTNCYQLPVEYSVEIHHHILSPHNPALATRFMPPGYKRRFVVIDQQVHRL
YSRAIIDYFDHFGVQCKFVVIRGEEQNKLFAAVENILNQLSEFGLLRREP
IVAFGGGCVLDIVGFAASCYRRGVPYIRVPTTLLSIVDASVGVKCGVDWH
HPTLGGLKNRVGSFYPPIAALLDKSFIRTQDQRNLINGMGEIMKLALVRS
AELFSLLEQHGARLIEQRFQSNDHVADRVIELSIQIMLEELGPNLWEHHL
ERCVDYGHTFSKILEMQAKTPVMHGEAVSIDGFLCILLSHRKGWISTQVR
NRVFAAMRSLQLPTWNSACTLKLLTKAIADGIEHRHGKLRMPLVKGNIGS
HGFVNEVKEEDLKAIIALALELHPGAAVKDLNAISM*
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spliced messenger RNA

>Ggra6415.t1 ID=Ggra6415.t1|Name=Ggra6415.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1311bp|location=Sequence derived from alignment at tig00000918_pilon:115976..117286- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCCGCCGCAACCGCAGCAGCAGCCGCAACTGCTACGCCAACAGC
CGCAGCAGCGCCGCACAGAGATGCTCGTCCGTTGCCTGCCGCGCCGCGCA
ACGTGTTTGTACACGATGGCGACCGCCAGCAGCCGCACAAGCTGCATGGA
TGGACCAATTGTTACCAGCTGCCCGTGGAGTACTCGGTTGAGATCCATCA
CCACATTCTGTCCCCGCACAACCCGGCGCTGGCCACGCGCTTCATGCCGC
CCGGCTACAAGCGCCGCTTCGTCGTTATCGATCAGCAGGTGCATCGCCTG
TATTCGCGCGCCATTATCGACTACTTTGACCACTTTGGCGTGCAGTGCAA
GTTCGTAGTCATCCGTGGCGAGGAGCAGAACAAGCTCTTTGCAGCCGTCG
AGAACATTCTCAACCAGTTGAGTGAGTTTGGCTTGCTGAGAAGAGAGCCT
ATCGTCGCCTTTGGAGGCGGCTGTGTGCTTGATATCGTCGGCTTTGCCGC
CAGTTGCTATCGCCGTGGCGTGCCGTACATTCGGGTGCCCACCACTCTGT
TGTCCATTGTCGATGCCAGCGTGGGCGTCAAGTGCGGCGTGGACTGGCAT
CACCCCACGCTTGGCGGGCTCAAGAACCGCGTGGGCTCCTTCTATCCCCC
GATTGCAGCGCTGTTGGACAAGTCCTTCATCCGCACGCAGGACCAACGCA
ACCTCATCAATGGCATGGGCGAAATCATGAAGCTCGCGCTCGTTCGCAGC
GCCGAGCTCTTCTCCTTACTAGAGCAGCATGGCGCACGCCTCATCGAGCA
ACGCTTCCAGTCCAATGACCACGTCGCCGACCGTGTCATTGAGCTGTCCA
TCCAGATCATGTTGGAGGAACTGGGACCCAATTTGTGGGAACACCATCTT
GAACGATGTGTGGACTATGGACATACCTTCAGCAAGATTCTCGAGATGCA
GGCCAAGACCCCCGTCATGCACGGCGAAGCAGTTAGTATTGATGGCTTTT
TATGCATTTTGCTCTCTCACCGAAAAGGTTGGATTTCCACTCAAGTGCGA
AACCGTGTGTTCGCCGCTATGAGAAGTTTACAATTACCAACTTGGAATTC
GGCTTGTACTCTTAAACTGCTCACCAAGGCCATTGCTGATGGCATTGAAC
ACCGACACGGCAAGCTTCGCATGCCGCTTGTCAAGGGCAACATCGGCTCC
CATGGCTTTGTCAATGAGGTCAAGGAGGAGGATTTGAAGGCTATCATTGC
TCTCGCGCTTGAACTCCATCCTGGCGCCGCCGTCAAAGATCTCAATGCCA
TCAGCATGTGA
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protein sequence of Ggra6415.t1

>Ggra6415.t1 ID=Ggra6415.t1|Name=Ggra6415.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=437bp
MAPAATAAAAATATPTAAAAPHRDARPLPAAPRNVFVHDGDRQQPHKLHG
WTNCYQLPVEYSVEIHHHILSPHNPALATRFMPPGYKRRFVVIDQQVHRL
YSRAIIDYFDHFGVQCKFVVIRGEEQNKLFAAVENILNQLSEFGLLRREP
IVAFGGGCVLDIVGFAASCYRRGVPYIRVPTTLLSIVDASVGVKCGVDWH
HPTLGGLKNRVGSFYPPIAALLDKSFIRTQDQRNLINGMGEIMKLALVRS
AELFSLLEQHGARLIEQRFQSNDHVADRVIELSIQIMLEELGPNLWEHHL
ERCVDYGHTFSKILEMQAKTPVMHGEAVSIDGFLCILLSHRKGWISTQVR
NRVFAAMRSLQLPTWNSACTLKLLTKAIADGIEHRHGKLRMPLVKGNIGS
HGFVNEVKEEDLKAIIALALELHPGAAVKDLNAISM*
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mRNA from alignment at tig00000918_pilon:115976..117286-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6415.t1 ID=Ggra6415.t1|Name=Ggra6415.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1311bp|location=Sequence derived from alignment at tig00000918_pilon:115976..117286- (Gracilaria gracilis GNS1m male)
ATGGCGCCCGCCGCAACCGCAGCAGCAGCCGCAACTGCTACGCCAACAGC
CGCAGCAGCGCCGCACAGAGATGCTCGTCCGTTGCCTGCCGCGCCGCGCA
ACGTGTTTGTACACGATGGCGACCGCCAGCAGCCGCACAAGCTGCATGGA
TGGACCAATTGTTACCAGCTGCCCGTGGAGTACTCGGTTGAGATCCATCA
CCACATTCTGTCCCCGCACAACCCGGCGCTGGCCACGCGCTTCATGCCGC
CCGGCTACAAGCGCCGCTTCGTCGTTATCGATCAGCAGGTGCATCGCCTG
TATTCGCGCGCCATTATCGACTACTTTGACCACTTTGGCGTGCAGTGCAA
GTTCGTAGTCATCCGTGGCGAGGAGCAGAACAAGCTCTTTGCAGCCGTCG
AGAACATTCTCAACCAGTTGAGTGAGTTTGGCTTGCTGAGAAGAGAGCCT
ATCGTCGCCTTTGGAGGCGGCTGTGTGCTTGATATCGTCGGCTTTGCCGC
CAGTTGCTATCGCCGTGGCGTGCCGTACATTCGGGTGCCCACCACTCTGT
TGTCCATTGTCGATGCCAGCGTGGGCGTCAAGTGCGGCGTGGACTGGCAT
CACCCCACGCTTGGCGGGCTCAAGAACCGCGTGGGCTCCTTCTATCCCCC
GATTGCAGCGCTGTTGGACAAGTCCTTCATCCGCACGCAGGACCAACGCA
ACCTCATCAATGGCATGGGCGAAATCATGAAGCTCGCGCTCGTTCGCAGC
GCCGAGCTCTTCTCCTTACTAGAGCAGCATGGCGCACGCCTCATCGAGCA
ACGCTTCCAGTCCAATGACCACGTCGCCGACCGTGTCATTGAGCTGTCCA
TCCAGATCATGTTGGAGGAACTGGGACCCAATTTGTGGGAACACCATCTT
GAACGATGTGTGGACTATGGACATACCTTCAGCAAGATTCTCGAGATGCA
GGCCAAGACCCCCGTCATGCACGGCGAAGCAGTTAGTATTGATGGCTTTT
TATGCATTTTGCTCTCTCACCGAAAAGGTTGGATTTCCACTCAAGTGCGA
AACCGTGTGTTCGCCGCTATGAGAAGTTTACAATTACCAACTTGGAATTC
GGCTTGTACTCTTAAACTGCTCACCAAGGCCATTGCTGATGGCATTGAAC
ACCGACACGGCAAGCTTCGCATGCCGCTTGTCAAGGGCAACATCGGCTCC
CATGGCTTTGTCAATGAGGTCAAGGAGGAGGATTTGAAGGCTATCATTGC
TCTCGCGCTTGAACTCCATCCTGGCGCCGCCGTCAAAGATCTCAATGCCA
TCAGCATGTGA
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Coding sequence (CDS) from alignment at tig00000918_pilon:115976..117286-

>Ggra6415.t1 ID=Ggra6415.t1|Name=Ggra6415.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1311bp|location=Sequence derived from alignment at tig00000918_pilon:115976..117286- (Gracilaria gracilis GNS1m male)
ATGGCGCCCGCCGCAACCGCAGCAGCAGCCGCAACTGCTACGCCAACAGC
CGCAGCAGCGCCGCACAGAGATGCTCGTCCGTTGCCTGCCGCGCCGCGCA
ACGTGTTTGTACACGATGGCGACCGCCAGCAGCCGCACAAGCTGCATGGA
TGGACCAATTGTTACCAGCTGCCCGTGGAGTACTCGGTTGAGATCCATCA
CCACATTCTGTCCCCGCACAACCCGGCGCTGGCCACGCGCTTCATGCCGC
CCGGCTACAAGCGCCGCTTCGTCGTTATCGATCAGCAGGTGCATCGCCTG
TATTCGCGCGCCATTATCGACTACTTTGACCACTTTGGCGTGCAGTGCAA
GTTCGTAGTCATCCGTGGCGAGGAGCAGAACAAGCTCTTTGCAGCCGTCG
AGAACATTCTCAACCAGTTGAGTGAGTTTGGCTTGCTGAGAAGAGAGCCT
ATCGTCGCCTTTGGAGGCGGCTGTGTGCTTGATATCGTCGGCTTTGCCGC
CAGTTGCTATCGCCGTGGCGTGCCGTACATTCGGGTGCCCACCACTCTGT
TGTCCATTGTCGATGCCAGCGTGGGCGTCAAGTGCGGCGTGGACTGGCAT
CACCCCACGCTTGGCGGGCTCAAGAACCGCGTGGGCTCCTTCTATCCCCC
GATTGCAGCGCTGTTGGACAAGTCCTTCATCCGCACGCAGGACCAACGCA
ACCTCATCAATGGCATGGGCGAAATCATGAAGCTCGCGCTCGTTCGCAGC
GCCGAGCTCTTCTCCTTACTAGAGCAGCATGGCGCACGCCTCATCGAGCA
ACGCTTCCAGTCCAATGACCACGTCGCCGACCGTGTCATTGAGCTGTCCA
TCCAGATCATGTTGGAGGAACTGGGACCCAATTTGTGGGAACACCATCTT
GAACGATGTGTGGACTATGGACATACCTTCAGCAAGATTCTCGAGATGCA
GGCCAAGACCCCCGTCATGCACGGCGAAGCAGTTAGTATTGATGGCTTTT
TATGCATTTTGCTCTCTCACCGAAAAGGTTGGATTTCCACTCAAGTGCGA
AACCGTGTGTTCGCCGCTATGAGAAGTTTACAATTACCAACTTGGAATTC
GGCTTGTACTCTTAAACTGCTCACCAAGGCCATTGCTGATGGCATTGAAC
ACCGACACGGCAAGCTTCGCATGCCGCTTGTCAAGGGCAACATCGGCTCC
CATGGCTTTGTCAATGAGGTCAAGGAGGAGGATTTGAAGGCTATCATTGC
TCTCGCGCTTGAACTCCATCCTGGCGCCGCCGTCAAAGATCTCAATGCCA
TCAGCATGTGA
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