Ggra6414.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6414.t1
Unique NameGgra6414.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length226
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000918_piloncontigtig00000918_pilon:114074..115572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6414Ggra6414Gracilaria gracilis GNS1m malegenetig00000918_pilon 114074..115572 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6414.t1Ggra6414.t1Gracilaria gracilis GNS1m malepolypeptidetig00000918_pilon 114074..115572 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6414.t1.start1Ggra6414.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000918_pilon 114074..114076 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6414.t1.CDS1Ggra6414.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000918_pilon 114074..114328 +
Ggra6414.t1.CDS2Ggra6414.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000918_pilon 115065..115172 +
Ggra6414.t1.CDS3Ggra6414.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000918_pilon 115258..115572 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6414.t1.exon1Ggra6414.t1.exon1Gracilaria gracilis GNS1m maleexontig00000918_pilon 114074..114328 +
Ggra6414.t1.exon2Ggra6414.t1.exon2Gracilaria gracilis GNS1m maleexontig00000918_pilon 115065..115172 +
Ggra6414.t1.exon3Ggra6414.t1.exon3Gracilaria gracilis GNS1m maleexontig00000918_pilon 115258..115572 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6414.t1.intron1Ggra6414.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000918_pilon 114329..115064 +
Ggra6414.t1.intron2Ggra6414.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000918_pilon 115173..115257 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6414.t1.stop1Ggra6414.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000918_pilon 115570..115572 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6414.t1 ID=Ggra6414.t1|Name=Ggra6414.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=226bp
MGADEEAQQQQRGDGVRTIGVADAFPKCGRIVDMYLKCLNDHPPSSPTSS
ACQRFAVLLGWCVTLSLCPTEARKLQDCCGGVPELRIDGSVYQTAIVYAA
TATRRPRHHSSFVYLCAKDTTEQSKCDEADIEEQKQRDKSLALREFSKVS
TLALLIGLVLFFFDILVSLVALSIGFVYAIAVLFEVRGADVLLTRVGNGV
SRLWNFGKKRIRNGLRVFRKDLKNN*
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spliced messenger RNA

>Ggra6414.t1 ID=Ggra6414.t1|Name=Ggra6414.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=678bp|location=Sequence derived from alignment at tig00000918_pilon:114074..115572+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCCGATGAAGAGGCGCAACAGCAGCAGCGCGGCGACGGCGTGCG
TACCATCGGCGTCGCCGACGCGTTTCCGAAGTGTGGCCGCATAGTGGACA
TGTACTTGAAGTGCCTGAACGATCATCCGCCCTCCTCGCCCACCTCGTCC
GCCTGTCAGCGCTTCGCCGTGCTGCTTGGCTGGTGCGTCACACTCTCGCT
GTGCCCCACCGAGGCCAGAAAGCTGCAGGACTGCTGCGGCGGCGTTCCGG
AGCTGCGGATTGATGGGAGCGTTTACCAAACTGCTATTGTTTACGCAGCC
ACTGCCACCCGGCGTCCAAGGCACCACAGCTCGTTTGTATACCTCTGTGC
CAAAGACACCACTGAGCAATCAAAATGCGATGAAGCGGACATTGAAGAAC
AGAAGCAGAGGGACAAATCGTTAGCTCTACGAGAGTTTAGCAAGGTTTCC
ACGTTGGCCTTGTTAATTGGGCTGGTACTCTTCTTCTTCGACATCCTTGT
ATCGCTCGTGGCGCTTTCTATAGGGTTTGTGTATGCTATTGCGGTTCTTT
TCGAAGTTCGTGGCGCTGATGTGCTACTAACGCGCGTCGGCAATGGTGTG
TCACGGCTGTGGAACTTTGGCAAGAAGCGCATCCGTAATGGTCTGCGAGT
TTTTCGGAAAGACTTGAAGAATAACTGA
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protein sequence of Ggra6414.t1

>Ggra6414.t1 ID=Ggra6414.t1|Name=Ggra6414.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=226bp
MGADEEAQQQQRGDGVRTIGVADAFPKCGRIVDMYLKCLNDHPPSSPTSS
ACQRFAVLLGWCVTLSLCPTEARKLQDCCGGVPELRIDGSVYQTAIVYAA
TATRRPRHHSSFVYLCAKDTTEQSKCDEADIEEQKQRDKSLALREFSKVS
TLALLIGLVLFFFDILVSLVALSIGFVYAIAVLFEVRGADVLLTRVGNGV
SRLWNFGKKRIRNGLRVFRKDLKNN*
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mRNA from alignment at tig00000918_pilon:114074..115572+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6414.t1 ID=Ggra6414.t1|Name=Ggra6414.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1499bp|location=Sequence derived from alignment at tig00000918_pilon:114074..115572+ (Gracilaria gracilis GNS1m male)
ATGGGCGCCGATGAAGAGGCGCAACAGCAGCAGCGCGGCGACGGCGTGCG
TACCATCGGCGTCGCCGACGCGTTTCCGAAGTGTGGCCGCATAGTGGACA
TGTACTTGAAGTGCCTGAACGATCATCCGCCCTCCTCGCCCACCTCGTCC
GCCTGTCAGCGCTTCGCCGTGCTGCTTGGCTGGTGCGTCACACTCTCGCT
GTGCCCCACCGAGGCCAGAAAGCTGCAGGACTGCTGCGGCGGCGTTCCGG
AGCTGGTGCGATGCAGCGAACAGCGCTGTCCCACGCACAATTTGAGGCTT
GATCGTTGTATGAGTCGACATACTAGAGATAGCGTTCTATGATAGGAGAA
CACCATCCGCCAAAACGTAATGCTGTGCTGCTACATAAGTTAGCTCTATC
TAGTGCTCAGCATGCAGTCGGAAAAGGCTGTCTGTTGTAAACCATGTCTC
ACTGCCCATGAAGAAGAACTGTTCAGAACACAGCAACAGCGAACGGACCC
GATTTTGATCTTTTCTGAATTGGTGCCATTCGTTGGCACAATCTCCATAA
AAGATCCCGCCGCGTATGACGCACCTCACCGACTGGTCGCTTTTGTGGTC
AGCGCTTTCTTGCTCACAACTCGCAACCCTCGAGCCGCTCGCCCGTCTGT
TTGCAGTGCTCAGCGTCGTCGTTGTTCCTCATTGCGTCGAAGCGTAACAT
ACTGTCCCGGCTCAAATTCGCCGCCGTTTACGAGAGAAGCGCACATATCT
ACGCACCATTTCGTCGCGCCTGACATCACGTTCGTTCCGCGGCACACAGC
GCACCACGTTGCTCTTCTCCATGCGTCGCTGTAGCGCCTAAGCTTCCACC
GTGCTTTTTGCAAATCGCTTAACGGTTAACGATATCCGCACAGTCACACA
GTGAAACGCAGCTGTCGTCATTTCTCACACGTGCTCAGCTCTGTTGTACT
TGTCCGACCCATTGACACGCTCGTTCCCCCGGACTCTATAGCGGATTGAT
GGGAGCGTTTACCAAACTGCTATTGTTTACGCAGCCACTGCCACCCGGCG
TCCAAGGCACCACAGCTCGTTTGTATACCTCTGTGCCAAAGACACCACTG
TACGTCGCGAACCCGAACAGACGGCGTTCCTCACCAAGTGTACGCCGCTC
GCGGCAGCAAATACAACTAACCACAAACAAGCAGGAGCAATCAAAATGCG
ATGAAGCGGACATTGAAGAACAGAAGCAGAGGGACAAATCGTTAGCTCTA
CGAGAGTTTAGCAAGGTTTCCACGTTGGCCTTGTTAATTGGGCTGGTACT
CTTCTTCTTCGACATCCTTGTATCGCTCGTGGCGCTTTCTATAGGGTTTG
TGTATGCTATTGCGGTTCTTTTCGAAGTTCGTGGCGCTGATGTGCTACTA
ACGCGCGTCGGCAATGGTGTGTCACGGCTGTGGAACTTTGGCAAGAAGCG
CATCCGTAATGGTCTGCGAGTTTTTCGGAAAGACTTGAAGAATAACTGA
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Coding sequence (CDS) from alignment at tig00000918_pilon:114074..115572+

>Ggra6414.t1 ID=Ggra6414.t1|Name=Ggra6414.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=678bp|location=Sequence derived from alignment at tig00000918_pilon:114074..115572+ (Gracilaria gracilis GNS1m male)
ATGGGCGCCGATGAAGAGGCGCAACAGCAGCAGCGCGGCGACGGCGTGCG
TACCATCGGCGTCGCCGACGCGTTTCCGAAGTGTGGCCGCATAGTGGACA
TGTACTTGAAGTGCCTGAACGATCATCCGCCCTCCTCGCCCACCTCGTCC
GCCTGTCAGCGCTTCGCCGTGCTGCTTGGCTGGTGCGTCACACTCTCGCT
GTGCCCCACCGAGGCCAGAAAGCTGCAGGACTGCTGCGGCGGCGTTCCGG
AGCTGCGGATTGATGGGAGCGTTTACCAAACTGCTATTGTTTACGCAGCC
ACTGCCACCCGGCGTCCAAGGCACCACAGCTCGTTTGTATACCTCTGTGC
CAAAGACACCACTGAGCAATCAAAATGCGATGAAGCGGACATTGAAGAAC
AGAAGCAGAGGGACAAATCGTTAGCTCTACGAGAGTTTAGCAAGGTTTCC
ACGTTGGCCTTGTTAATTGGGCTGGTACTCTTCTTCTTCGACATCCTTGT
ATCGCTCGTGGCGCTTTCTATAGGGTTTGTGTATGCTATTGCGGTTCTTT
TCGAAGTTCGTGGCGCTGATGTGCTACTAACGCGCGTCGGCAATGGTGTG
TCACGGCTGTGGAACTTTGGCAAGAAGCGCATCCGTAATGGTCTGCGAGT
TTTTCGGAAAGACTTGAAGAATAACTGA
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