Ggra6410.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6410.t1
Unique NameGgra6410.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length449
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000918_piloncontigtig00000918_pilon:93852..95198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7719.XP_002129829.1
PFAMsMFS_5
Max annot lvl33208|Metazoa
Evalue3.36e-131
EggNOG OGsKOG4332@1|root,KOG4332@2759|Eukaryota,38BSQ@33154|Opisthokonta,3BH1S@33208|Metazoa,3CW1T@33213|Bilateria,48IV1@7711|Chordata
DescriptionSugar-tranasporters, 12 TM
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6410Ggra6410Gracilaria gracilis GNS1m malegenetig00000918_pilon 93852..95198 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6410.t1.stop1Ggra6410.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000918_pilon 93852..93854 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6410.t1.CDS1Ggra6410.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000918_pilon 93852..95198 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6410.t1.exon1Ggra6410.t1.exon1Gracilaria gracilis GNS1m maleexontig00000918_pilon 93852..95198 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6410.t1.start1Ggra6410.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000918_pilon 95196..95198 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6410.t1Ggra6410.t1Gracilaria gracilis GNS1m malepolypeptidetig00000918_pilon 93852..95198 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6410.t1 ID=Ggra6410.t1|Name=Ggra6410.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=449bp
MYHISFCALVSATAFTHVLTRRFQKPTDPKQELSAEDDSFRKFQANYLLV
YFLAVAADWVQGPYVYALYSYYGFAKTEIARLYITGFASSAVFGTIVASV
ADKFGRRNNALVYCLTYILSCATKHSSNFWMLLLGRVLGGIAYSILFSAF
EAWMVYEHHNRGFDSSRLGITFARAQFGNGIIAIIAGQVAGWFADRYGKV
MPFDVSILVLIVLGIILASTWTENYGDAQQSVGGGFARAWVSLLSDEKIL
LLGVSQAAFEGAMYTFTFVWTPALQTAKGQVGEIPHGTIFSSFMAATMIG
SNLFAFWQRSVRVELLMRNVFVVAAVVFMVTTLSGKIEVVYGGFLVFEIL
CGIYFPGMATMRAPYIPEESRSAILNFFRVPLNLIVVIALYEDLEVKTVF
GLCACLMIVAVISQQRLMRLARYAPCDDQDVESAETQKKSKECAEDQR*
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spliced messenger RNA

>Ggra6410.t1 ID=Ggra6410.t1|Name=Ggra6410.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1347bp|location=Sequence derived from alignment at tig00000918_pilon:93852..95198- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATCACATCTCCTTTTGCGCACTGGTGTCAGCAACCGCATTCACGCA
CGTCCTCACTCGCCGCTTCCAGAAACCTACCGATCCCAAACAAGAGCTCA
GTGCCGAAGATGATTCTTTTCGAAAGTTCCAAGCAAACTATCTACTGGTA
TACTTCTTAGCCGTTGCCGCTGACTGGGTCCAAGGGCCATACGTCTACGC
CCTTTATTCCTACTATGGCTTTGCCAAAACAGAAATAGCGCGATTGTACA
TCACAGGCTTTGCCTCTTCGGCAGTGTTTGGCACGATTGTCGCTTCAGTT
GCCGACAAGTTTGGGAGGAGGAACAATGCCTTGGTCTACTGCCTTACCTA
CATTCTCTCTTGCGCTACGAAACATTCGTCCAACTTCTGGATGCTTTTGC
TGGGTCGCGTTTTGGGCGGTATCGCGTACTCCATTTTGTTCTCTGCGTTC
GAAGCATGGATGGTATACGAGCATCACAACAGGGGTTTCGATTCCTCACG
GCTAGGCATCACGTTTGCTCGCGCGCAATTTGGTAACGGAATCATCGCAA
TCATAGCAGGCCAAGTTGCCGGATGGTTTGCTGATCGCTACGGGAAGGTT
ATGCCTTTTGATGTTTCCATATTAGTTTTGATTGTTCTTGGAATAATTCT
GGCGTCAACATGGACAGAAAACTATGGCGATGCGCAACAGAGCGTCGGCG
GGGGGTTCGCTCGAGCTTGGGTTTCCCTGCTTTCTGATGAGAAAATTCTG
CTGCTCGGAGTGAGCCAGGCTGCTTTCGAGGGGGCGATGTATACTTTCAC
GTTTGTATGGACTCCTGCATTGCAAACAGCAAAGGGACAAGTAGGCGAGA
TTCCGCATGGAACAATCTTTTCGTCATTCATGGCTGCGACAATGATTGGG
AGCAACTTGTTCGCGTTCTGGCAGCGGAGTGTCAGGGTGGAGCTCTTGAT
GCGAAATGTATTTGTAGTGGCGGCGGTGGTGTTTATGGTGACCACTCTTT
CTGGTAAGATTGAAGTGGTCTACGGCGGATTCCTCGTCTTTGAGATTCTG
TGTGGGATTTATTTTCCAGGTATGGCTACGATGAGAGCACCATATATTCC
AGAAGAAAGCAGAAGCGCAATTCTCAACTTCTTTCGGGTTCCGCTAAATC
TCATCGTGGTAATTGCATTATACGAAGACTTGGAAGTAAAAACAGTATTC
GGATTATGTGCGTGCTTGATGATTGTCGCGGTCATTAGCCAACAACGTTT
GATGCGACTAGCAAGATATGCACCCTGTGATGATCAAGATGTTGAAAGCG
CCGAAACCCAAAAGAAGTCCAAGGAATGTGCTGAAGACCAGCGATGA
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protein sequence of Ggra6410.t1

>Ggra6410.t1 ID=Ggra6410.t1|Name=Ggra6410.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=449bp
MYHISFCALVSATAFTHVLTRRFQKPTDPKQELSAEDDSFRKFQANYLLV
YFLAVAADWVQGPYVYALYSYYGFAKTEIARLYITGFASSAVFGTIVASV
ADKFGRRNNALVYCLTYILSCATKHSSNFWMLLLGRVLGGIAYSILFSAF
EAWMVYEHHNRGFDSSRLGITFARAQFGNGIIAIIAGQVAGWFADRYGKV
MPFDVSILVLIVLGIILASTWTENYGDAQQSVGGGFARAWVSLLSDEKIL
LLGVSQAAFEGAMYTFTFVWTPALQTAKGQVGEIPHGTIFSSFMAATMIG
SNLFAFWQRSVRVELLMRNVFVVAAVVFMVTTLSGKIEVVYGGFLVFEIL
CGIYFPGMATMRAPYIPEESRSAILNFFRVPLNLIVVIALYEDLEVKTVF
GLCACLMIVAVISQQRLMRLARYAPCDDQDVESAETQKKSKECAEDQR*
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mRNA from alignment at tig00000918_pilon:93852..95198-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6410.t1 ID=Ggra6410.t1|Name=Ggra6410.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1347bp|location=Sequence derived from alignment at tig00000918_pilon:93852..95198- (Gracilaria gracilis GNS1m male)
ATGTATCACATCTCCTTTTGCGCACTGGTGTCAGCAACCGCATTCACGCA
CGTCCTCACTCGCCGCTTCCAGAAACCTACCGATCCCAAACAAGAGCTCA
GTGCCGAAGATGATTCTTTTCGAAAGTTCCAAGCAAACTATCTACTGGTA
TACTTCTTAGCCGTTGCCGCTGACTGGGTCCAAGGGCCATACGTCTACGC
CCTTTATTCCTACTATGGCTTTGCCAAAACAGAAATAGCGCGATTGTACA
TCACAGGCTTTGCCTCTTCGGCAGTGTTTGGCACGATTGTCGCTTCAGTT
GCCGACAAGTTTGGGAGGAGGAACAATGCCTTGGTCTACTGCCTTACCTA
CATTCTCTCTTGCGCTACGAAACATTCGTCCAACTTCTGGATGCTTTTGC
TGGGTCGCGTTTTGGGCGGTATCGCGTACTCCATTTTGTTCTCTGCGTTC
GAAGCATGGATGGTATACGAGCATCACAACAGGGGTTTCGATTCCTCACG
GCTAGGCATCACGTTTGCTCGCGCGCAATTTGGTAACGGAATCATCGCAA
TCATAGCAGGCCAAGTTGCCGGATGGTTTGCTGATCGCTACGGGAAGGTT
ATGCCTTTTGATGTTTCCATATTAGTTTTGATTGTTCTTGGAATAATTCT
GGCGTCAACATGGACAGAAAACTATGGCGATGCGCAACAGAGCGTCGGCG
GGGGGTTCGCTCGAGCTTGGGTTTCCCTGCTTTCTGATGAGAAAATTCTG
CTGCTCGGAGTGAGCCAGGCTGCTTTCGAGGGGGCGATGTATACTTTCAC
GTTTGTATGGACTCCTGCATTGCAAACAGCAAAGGGACAAGTAGGCGAGA
TTCCGCATGGAACAATCTTTTCGTCATTCATGGCTGCGACAATGATTGGG
AGCAACTTGTTCGCGTTCTGGCAGCGGAGTGTCAGGGTGGAGCTCTTGAT
GCGAAATGTATTTGTAGTGGCGGCGGTGGTGTTTATGGTGACCACTCTTT
CTGGTAAGATTGAAGTGGTCTACGGCGGATTCCTCGTCTTTGAGATTCTG
TGTGGGATTTATTTTCCAGGTATGGCTACGATGAGAGCACCATATATTCC
AGAAGAAAGCAGAAGCGCAATTCTCAACTTCTTTCGGGTTCCGCTAAATC
TCATCGTGGTAATTGCATTATACGAAGACTTGGAAGTAAAAACAGTATTC
GGATTATGTGCGTGCTTGATGATTGTCGCGGTCATTAGCCAACAACGTTT
GATGCGACTAGCAAGATATGCACCCTGTGATGATCAAGATGTTGAAAGCG
CCGAAACCCAAAAGAAGTCCAAGGAATGTGCTGAAGACCAGCGATGA
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Coding sequence (CDS) from alignment at tig00000918_pilon:93852..95198-

>Ggra6410.t1 ID=Ggra6410.t1|Name=Ggra6410.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1347bp|location=Sequence derived from alignment at tig00000918_pilon:93852..95198- (Gracilaria gracilis GNS1m male)
ATGTATCACATCTCCTTTTGCGCACTGGTGTCAGCAACCGCATTCACGCA
CGTCCTCACTCGCCGCTTCCAGAAACCTACCGATCCCAAACAAGAGCTCA
GTGCCGAAGATGATTCTTTTCGAAAGTTCCAAGCAAACTATCTACTGGTA
TACTTCTTAGCCGTTGCCGCTGACTGGGTCCAAGGGCCATACGTCTACGC
CCTTTATTCCTACTATGGCTTTGCCAAAACAGAAATAGCGCGATTGTACA
TCACAGGCTTTGCCTCTTCGGCAGTGTTTGGCACGATTGTCGCTTCAGTT
GCCGACAAGTTTGGGAGGAGGAACAATGCCTTGGTCTACTGCCTTACCTA
CATTCTCTCTTGCGCTACGAAACATTCGTCCAACTTCTGGATGCTTTTGC
TGGGTCGCGTTTTGGGCGGTATCGCGTACTCCATTTTGTTCTCTGCGTTC
GAAGCATGGATGGTATACGAGCATCACAACAGGGGTTTCGATTCCTCACG
GCTAGGCATCACGTTTGCTCGCGCGCAATTTGGTAACGGAATCATCGCAA
TCATAGCAGGCCAAGTTGCCGGATGGTTTGCTGATCGCTACGGGAAGGTT
ATGCCTTTTGATGTTTCCATATTAGTTTTGATTGTTCTTGGAATAATTCT
GGCGTCAACATGGACAGAAAACTATGGCGATGCGCAACAGAGCGTCGGCG
GGGGGTTCGCTCGAGCTTGGGTTTCCCTGCTTTCTGATGAGAAAATTCTG
CTGCTCGGAGTGAGCCAGGCTGCTTTCGAGGGGGCGATGTATACTTTCAC
GTTTGTATGGACTCCTGCATTGCAAACAGCAAAGGGACAAGTAGGCGAGA
TTCCGCATGGAACAATCTTTTCGTCATTCATGGCTGCGACAATGATTGGG
AGCAACTTGTTCGCGTTCTGGCAGCGGAGTGTCAGGGTGGAGCTCTTGAT
GCGAAATGTATTTGTAGTGGCGGCGGTGGTGTTTATGGTGACCACTCTTT
CTGGTAAGATTGAAGTGGTCTACGGCGGATTCCTCGTCTTTGAGATTCTG
TGTGGGATTTATTTTCCAGGTATGGCTACGATGAGAGCACCATATATTCC
AGAAGAAAGCAGAAGCGCAATTCTCAACTTCTTTCGGGTTCCGCTAAATC
TCATCGTGGTAATTGCATTATACGAAGACTTGGAAGTAAAAACAGTATTC
GGATTATGTGCGTGCTTGATGATTGTCGCGGTCATTAGCCAACAACGTTT
GATGCGACTAGCAAGATATGCACCCTGTGATGATCAAGATGTTGAAAGCG
CCGAAACCCAAAAGAAGTCCAAGGAATGTGCTGAAGACCAGCGATGA
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