Ggra641.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra641.t1
Unique NameGgra641.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length102
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000243_piloncontigtig00000243_pilon:54018..54323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2711.XP_006471185.1
Preferred namePGP10
PFAMsABC_membrane,ABC_tran
Max annot lvl35493|Streptophyta
KEGG koko:K05658
KEGG TC3.A.1.201
KEGG Pathwayko02010,ko04976,ko05206,ko05226,map02010,map04976,map05206,map05226
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0016020,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue8.97e-21
EggNOG OGsCOG1132@1|root,KOG0055@2759|Eukaryota,37J93@33090|Viridiplantae,3GDPD@35493|Streptophyta
EC3.6.3.44
DescriptionABC transporter B family member
COG categoryQ
BRITEko00000,ko00001,ko01000,ko02000,ko04090,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra641Ggra641Gracilaria gracilis GNS1m malegenetig00000243_pilon 54018..54323 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra641.t1.stop1Ggra641.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000243_pilon 54018..54020 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra641.t1.CDS1Ggra641.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000243_pilon 54018..54323 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra641.t1.exon1Ggra641.t1.exon1Gracilaria gracilis GNS1m maleexontig00000243_pilon 54018..54323 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra641.t1.start1Ggra641.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000243_pilon 54321..54323 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra641.t1Ggra641.t1Gracilaria gracilis GNS1m malepolypeptidetig00000243_pilon 54018..54323 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra641.t1 ID=Ggra641.t1|Name=Ggra641.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=102bp
MRARGSKLSGGQRQLVAISLSIVTAENSGTGVLDEATSTLDAVSERVVQV
AWDRVGPGGVTIAVAHRLSPVKDADAIAVVWRRKILEVGRHEKLLRIENW
E*
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spliced messenger RNA

>Ggra641.t1 ID=Ggra641.t1|Name=Ggra641.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=306bp|location=Sequence derived from alignment at tig00000243_pilon:54018..54323- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGCACGCGGGAGCAAACTTTCTGGTGGACAACGGCAGCTGGTGGC
GATTTCACTCTCAATCGTCACTGCTGAGAATTCTGGTACTGGGGTACTGG
ATGAGGCTACGTCGACGCTTGACGCGGTCTCCGAGCGCGTGGTGCAGGTT
GCTTGGGATCGTGTGGGACCGGGAGGCGTTACGATTGCGGTGGCTCACCG
ACTGTCGCCTGTGAAGGACGCTGACGCTATCGCGGTGGTGTGGCGCAGAA
AGATTCTAGAGGTTGGGCGACATGAGAAGTTGTTGAGGATTGAGAACTGG
GAGTAG
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protein sequence of Ggra641.t1

>Ggra641.t1 ID=Ggra641.t1|Name=Ggra641.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=102bp
MRARGSKLSGGQRQLVAISLSIVTAENSGTGVLDEATSTLDAVSERVVQV
AWDRVGPGGVTIAVAHRLSPVKDADAIAVVWRRKILEVGRHEKLLRIENW
E*
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mRNA from alignment at tig00000243_pilon:54018..54323-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra641.t1 ID=Ggra641.t1|Name=Ggra641.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=306bp|location=Sequence derived from alignment at tig00000243_pilon:54018..54323- (Gracilaria gracilis GNS1m male)
ATGCGAGCACGCGGGAGCAAACTTTCTGGTGGACAACGGCAGCTGGTGGC
GATTTCACTCTCAATCGTCACTGCTGAGAATTCTGGTACTGGGGTACTGG
ATGAGGCTACGTCGACGCTTGACGCGGTCTCCGAGCGCGTGGTGCAGGTT
GCTTGGGATCGTGTGGGACCGGGAGGCGTTACGATTGCGGTGGCTCACCG
ACTGTCGCCTGTGAAGGACGCTGACGCTATCGCGGTGGTGTGGCGCAGAA
AGATTCTAGAGGTTGGGCGACATGAGAAGTTGTTGAGGATTGAGAACTGG
GAGTAG
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Coding sequence (CDS) from alignment at tig00000243_pilon:54018..54323-

>Ggra641.t1 ID=Ggra641.t1|Name=Ggra641.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=306bp|location=Sequence derived from alignment at tig00000243_pilon:54018..54323- (Gracilaria gracilis GNS1m male)
ATGCGAGCACGCGGGAGCAAACTTTCTGGTGGACAACGGCAGCTGGTGGC
GATTTCACTCTCAATCGTCACTGCTGAGAATTCTGGTACTGGGGTACTGG
ATGAGGCTACGTCGACGCTTGACGCGGTCTCCGAGCGCGTGGTGCAGGTT
GCTTGGGATCGTGTGGGACCGGGAGGCGTTACGATTGCGGTGGCTCACCG
ACTGTCGCCTGTGAAGGACGCTGACGCTATCGCGGTGGTGTGGCGCAGAA
AGATTCTAGAGGTTGGGCGACATGAGAAGTTGTTGAGGATTGAGAACTGG
GAGTAG
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