Ggra6408.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6408.t1
Unique NameGgra6408.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length586
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000918_piloncontigtig00000918_pilon:90478..92471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6408Ggra6408Gracilaria gracilis GNS1m malegenetig00000918_pilon 90478..92471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6408.t1Ggra6408.t1Gracilaria gracilis GNS1m malepolypeptidetig00000918_pilon 90478..92471 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6408.t1.stop1Ggra6408.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000918_pilon 90478..90480 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6408.t1.CDS1Ggra6408.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000918_pilon 90478..90821 -
Ggra6408.t1.CDS2Ggra6408.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000918_pilon 90934..92265 -
Ggra6408.t1.CDS3Ggra6408.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000918_pilon 92390..92471 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6408.t1.exon1Ggra6408.t1.exon1Gracilaria gracilis GNS1m maleexontig00000918_pilon 90478..90821 -
Ggra6408.t1.exon2Ggra6408.t1.exon2Gracilaria gracilis GNS1m maleexontig00000918_pilon 90934..92265 -
Ggra6408.t1.exon3Ggra6408.t1.exon3Gracilaria gracilis GNS1m maleexontig00000918_pilon 92390..92471 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6408.t1.intron1Ggra6408.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000918_pilon 90822..90933 -
Ggra6408.t1.intron2Ggra6408.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000918_pilon 92266..92389 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6408.t1.start1Ggra6408.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000918_pilon 92469..92471 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6408.t1 ID=Ggra6408.t1|Name=Ggra6408.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=586bp
MAKRLLCMVSGDKIPCQVHKRVLFYSQHSTEYLYLGTMEDFRIKRGKVRA
RDAREGNIRKVDVKRLSEIHGSGCSEWAERTEMRFRMRKTAKNWTTLFLS
EGIVLQGHYECANLLRASSCISSNPIIVEADAFFPYCSEYDRRVNGYKVG
QVQDARNVTVVHLSERTSRQLTLEAGEVYLIGGLYDPQPYCHVCRKSHDI
EISPCAAALRFMPLPSHAHFKKQIYDRERPGARVLTLIPGKTTELSCYEA
DDELCRDCHDKAVRNGAMWLKMDGSCPDKRCPMFEWCECWDENEPDSGLC
VHYVYVKECKYNNLPDEPLATAIATGLIKVVTGSIEPYLQRWTSGELRRV
ARKLFKQGKKVTLEELLEQYSMEFNGSTLRKSEVMALAMRDVKLADIIDG
YNSYTLSKINGFVENTEMMEVGPWLTGRLVTDCDGVWWQTGRSEPVLVST
EGDVSTVWKASMASMRESDDLGWVELGNFRCIEHFLRLSTWSLPQIAVEK
WIKSPPILSGVGATLSELIHSPGYRMYRTQLFYEAHIGVILSKMNAQFRE
KNADSAHYFANGGQVYRQHLTDAAAVTSSRASIAR*
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spliced messenger RNA

>Ggra6408.t1 ID=Ggra6408.t1|Name=Ggra6408.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1758bp|location=Sequence derived from alignment at tig00000918_pilon:90478..92471- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAAGAGGCTTCTTTGTATGGTTTCCGGCGATAAGATTCCCTGCCA
GGTACACAAACGCGTTCTCTTCTACTCGCAGCACTCGACTGAATATCTAT
ATCTCGGGACCATGGAAGACTTCCGCATAAAGCGTGGAAAAGTTCGTGCC
AGAGATGCGAGGGAGGGAAATATACGCAAGGTCGACGTGAAACGTTTGTC
CGAAATCCACGGTTCTGGCTGTTCTGAATGGGCTGAGAGAACTGAGATGC
GCTTCAGAATGAGGAAGACCGCTAAGAATTGGACCACGTTATTCCTGTCC
GAAGGCATCGTTCTGCAAGGGCATTACGAGTGCGCAAATCTGCTGCGCGC
TTCATCTTGTATCTCTTCCAACCCAATCATAGTTGAAGCCGACGCTTTCT
TTCCGTATTGCTCAGAATACGATCGCCGCGTGAACGGTTATAAAGTTGGT
CAAGTACAAGACGCAAGGAATGTCACCGTTGTTCATCTTTCGGAACGAAC
TTCTCGTCAACTCACGCTTGAAGCCGGCGAAGTTTACCTCATTGGAGGCC
TGTATGATCCACAACCTTATTGTCACGTTTGTCGGAAAAGCCATGACATC
GAAATTTCTCCATGCGCTGCTGCACTTAGATTCATGCCTCTCCCGTCACA
TGCACATTTCAAGAAACAAATATACGACCGAGAGAGGCCAGGAGCCCGCG
TTCTAACACTAATCCCTGGGAAAACCACAGAACTTTCATGTTATGAGGCC
GACGACGAGTTGTGCAGGGACTGTCACGACAAGGCCGTACGGAACGGGGC
CATGTGGCTCAAAATGGATGGAAGTTGTCCAGATAAGCGTTGTCCAATGT
TCGAGTGGTGTGAGTGCTGGGATGAGAACGAACCTGATTCTGGACTGTGT
GTGCATTATGTATACGTTAAGGAATGCAAGTACAACAATTTGCCAGACGA
ACCTTTGGCGACCGCAATCGCCACCGGTTTGATAAAAGTTGTAACTGGTT
CTATAGAGCCGTATCTGCAAAGGTGGACTTCGGGTGAGCTGCGGCGGGTT
GCAAGGAAATTGTTTAAGCAAGGGAAGAAGGTAACCTTGGAGGAATTGTT
AGAACAATATTCGATGGAATTTAATGGGTCCACATTGCGGAAGAGTGAAG
TGATGGCGCTGGCCATGAGGGACGTCAAGTTGGCTGACATTATCGACGGA
TATAATAGTTACACTCTCAGCAAAATTAATGGATTCGTCGAGAACACGGA
GATGATGGAGGTAGGGCCATGGCTGACGGGAAGGCTTGTCACAGATTGTG
ATGGGGTGTGGTGGCAAACTGGCCGAAGTGAACCCGTACTGGTAAGCACG
GAGGGCGATGTGTCCACTGTTTGGAAGGCGTCCATGGCGTCGATGCGGGA
ATCCGATGATCTAGGATGGGTCGAATTGGGTAACTTCAGGTGCATCGAAC
ACTTTTTACGCCTCTCAACGTGGTCGCTTCCACAAATTGCTGTCGAGAAG
TGGATAAAGAGTCCTCCCATTTTGTCTGGTGTGGGTGCTACTTTATCAGA
GCTCATTCATTCTCCAGGATATCGGATGTATCGAACACAACTCTTCTATG
AGGCACATATCGGCGTGATTCTGTCCAAGATGAACGCTCAATTTAGAGAG
AAGAATGCGGACTCTGCTCATTATTTTGCAAATGGAGGACAGGTTTACCG
CCAGCACTTGACTGATGCTGCTGCGGTTACTTCGTCGAGAGCATCAATAG
CGCGGTAA
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protein sequence of Ggra6408.t1

>Ggra6408.t1 ID=Ggra6408.t1|Name=Ggra6408.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=586bp
MAKRLLCMVSGDKIPCQVHKRVLFYSQHSTEYLYLGTMEDFRIKRGKVRA
RDAREGNIRKVDVKRLSEIHGSGCSEWAERTEMRFRMRKTAKNWTTLFLS
EGIVLQGHYECANLLRASSCISSNPIIVEADAFFPYCSEYDRRVNGYKVG
QVQDARNVTVVHLSERTSRQLTLEAGEVYLIGGLYDPQPYCHVCRKSHDI
EISPCAAALRFMPLPSHAHFKKQIYDRERPGARVLTLIPGKTTELSCYEA
DDELCRDCHDKAVRNGAMWLKMDGSCPDKRCPMFEWCECWDENEPDSGLC
VHYVYVKECKYNNLPDEPLATAIATGLIKVVTGSIEPYLQRWTSGELRRV
ARKLFKQGKKVTLEELLEQYSMEFNGSTLRKSEVMALAMRDVKLADIIDG
YNSYTLSKINGFVENTEMMEVGPWLTGRLVTDCDGVWWQTGRSEPVLVST
EGDVSTVWKASMASMRESDDLGWVELGNFRCIEHFLRLSTWSLPQIAVEK
WIKSPPILSGVGATLSELIHSPGYRMYRTQLFYEAHIGVILSKMNAQFRE
KNADSAHYFANGGQVYRQHLTDAAAVTSSRASIAR*
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mRNA from alignment at tig00000918_pilon:90478..92471-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6408.t1 ID=Ggra6408.t1|Name=Ggra6408.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1994bp|location=Sequence derived from alignment at tig00000918_pilon:90478..92471- (Gracilaria gracilis GNS1m male)
ATGGCCAAGAGGCTTCTTTGTATGGTTTCCGGCGATAAGATTCCCTGCCA
GGTACACAAACGCGTTCTCTTCTACTCGCAGCGTGAGTTCATCCCGCTCA
CCAACATTTGCTGCGATACACGTTTGCGCAAAGATCCAGAAAGACCACAT
TTCTGAAGCGATGTCAGCCGGCTTTGACAACTCTGAAAACTCTGACAGTT
CCCTAGACTCGACTGAATATCTATATCTCGGGACCATGGAAGACTTCCGC
ATAAAGCGTGGAAAAGTTCGTGCCAGAGATGCGAGGGAGGGAAATATACG
CAAGGTCGACGTGAAACGTTTGTCCGAAATCCACGGTTCTGGCTGTTCTG
AATGGGCTGAGAGAACTGAGATGCGCTTCAGAATGAGGAAGACCGCTAAG
AATTGGACCACGTTATTCCTGTCCGAAGGCATCGTTCTGCAAGGGCATTA
CGAGTGCGCAAATCTGCTGCGCGCTTCATCTTGTATCTCTTCCAACCCAA
TCATAGTTGAAGCCGACGCTTTCTTTCCGTATTGCTCAGAATACGATCGC
CGCGTGAACGGTTATAAAGTTGGTCAAGTACAAGACGCAAGGAATGTCAC
CGTTGTTCATCTTTCGGAACGAACTTCTCGTCAACTCACGCTTGAAGCCG
GCGAAGTTTACCTCATTGGAGGCCTGTATGATCCACAACCTTATTGTCAC
GTTTGTCGGAAAAGCCATGACATCGAAATTTCTCCATGCGCTGCTGCACT
TAGATTCATGCCTCTCCCGTCACATGCACATTTCAAGAAACAAATATACG
ACCGAGAGAGGCCAGGAGCCCGCGTTCTAACACTAATCCCTGGGAAAACC
ACAGAACTTTCATGTTATGAGGCCGACGACGAGTTGTGCAGGGACTGTCA
CGACAAGGCCGTACGGAACGGGGCCATGTGGCTCAAAATGGATGGAAGTT
GTCCAGATAAGCGTTGTCCAATGTTCGAGTGGTGTGAGTGCTGGGATGAG
AACGAACCTGATTCTGGACTGTGTGTGCATTATGTATACGTTAAGGAATG
CAAGTACAACAATTTGCCAGACGAACCTTTGGCGACCGCAATCGCCACCG
GTTTGATAAAAGTTGTAACTGGTTCTATAGAGCCGTATCTGCAAAGGTGG
ACTTCGGGTGAGCTGCGGCGGGTTGCAAGGAAATTGTTTAAGCAAGGGAA
GAAGGTAACCTTGGAGGAATTGTTAGAACAATATTCGATGGAATTTAATG
GGTCCACATTGCGGAAGAGTGAAGTGATGGCGCTGGCCATGAGGGACGTC
AAGTTGGCTGACATTATCGACGGATATAATAGTTACACTCTCAGCAAAAT
TAATGGATTCGTCGAGAACACGGAGATGATGGAGGTAGGGCCATGGCTGA
CGGGAAGGCTTGTCACAGATTGTGATGGGGTGTGGTGGCAAACTGGCCGA
AGTGAACCCGTACTGGTAAGCACGGAGGGCGATGTGTCCACTGTTTGGAA
GGCGTCCATGGCGTCGATGCGGGAATCCGATGATCTAGGTAAATGGATAG
CATGAGGTACAGGGTACGTTTGCTTGTGTATCGTGTAACGTCGTGCTTCC
GAACCTTCACAGCTCGAGAACATTAAGAACATCAGGAATCACTTGTATAG
GATGGGTCGAATTGGGTAACTTCAGGTGCATCGAACACTTTTTACGCCTC
TCAACGTGGTCGCTTCCACAAATTGCTGTCGAGAAGTGGATAAAGAGTCC
TCCCATTTTGTCTGGTGTGGGTGCTACTTTATCAGAGCTCATTCATTCTC
CAGGATATCGGATGTATCGAACACAACTCTTCTATGAGGCACATATCGGC
GTGATTCTGTCCAAGATGAACGCTCAATTTAGAGAGAAGAATGCGGACTC
TGCTCATTATTTTGCAAATGGAGGACAGGTTTACCGCCAGCACTTGACTG
ATGCTGCTGCGGTTACTTCGTCGAGAGCATCAATAGCGCGGTAA
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Coding sequence (CDS) from alignment at tig00000918_pilon:90478..92471-

>Ggra6408.t1 ID=Ggra6408.t1|Name=Ggra6408.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1758bp|location=Sequence derived from alignment at tig00000918_pilon:90478..92471- (Gracilaria gracilis GNS1m male)
ATGGCCAAGAGGCTTCTTTGTATGGTTTCCGGCGATAAGATTCCCTGCCA
GGTACACAAACGCGTTCTCTTCTACTCGCAGCACTCGACTGAATATCTAT
ATCTCGGGACCATGGAAGACTTCCGCATAAAGCGTGGAAAAGTTCGTGCC
AGAGATGCGAGGGAGGGAAATATACGCAAGGTCGACGTGAAACGTTTGTC
CGAAATCCACGGTTCTGGCTGTTCTGAATGGGCTGAGAGAACTGAGATGC
GCTTCAGAATGAGGAAGACCGCTAAGAATTGGACCACGTTATTCCTGTCC
GAAGGCATCGTTCTGCAAGGGCATTACGAGTGCGCAAATCTGCTGCGCGC
TTCATCTTGTATCTCTTCCAACCCAATCATAGTTGAAGCCGACGCTTTCT
TTCCGTATTGCTCAGAATACGATCGCCGCGTGAACGGTTATAAAGTTGGT
CAAGTACAAGACGCAAGGAATGTCACCGTTGTTCATCTTTCGGAACGAAC
TTCTCGTCAACTCACGCTTGAAGCCGGCGAAGTTTACCTCATTGGAGGCC
TGTATGATCCACAACCTTATTGTCACGTTTGTCGGAAAAGCCATGACATC
GAAATTTCTCCATGCGCTGCTGCACTTAGATTCATGCCTCTCCCGTCACA
TGCACATTTCAAGAAACAAATATACGACCGAGAGAGGCCAGGAGCCCGCG
TTCTAACACTAATCCCTGGGAAAACCACAGAACTTTCATGTTATGAGGCC
GACGACGAGTTGTGCAGGGACTGTCACGACAAGGCCGTACGGAACGGGGC
CATGTGGCTCAAAATGGATGGAAGTTGTCCAGATAAGCGTTGTCCAATGT
TCGAGTGGTGTGAGTGCTGGGATGAGAACGAACCTGATTCTGGACTGTGT
GTGCATTATGTATACGTTAAGGAATGCAAGTACAACAATTTGCCAGACGA
ACCTTTGGCGACCGCAATCGCCACCGGTTTGATAAAAGTTGTAACTGGTT
CTATAGAGCCGTATCTGCAAAGGTGGACTTCGGGTGAGCTGCGGCGGGTT
GCAAGGAAATTGTTTAAGCAAGGGAAGAAGGTAACCTTGGAGGAATTGTT
AGAACAATATTCGATGGAATTTAATGGGTCCACATTGCGGAAGAGTGAAG
TGATGGCGCTGGCCATGAGGGACGTCAAGTTGGCTGACATTATCGACGGA
TATAATAGTTACACTCTCAGCAAAATTAATGGATTCGTCGAGAACACGGA
GATGATGGAGGTAGGGCCATGGCTGACGGGAAGGCTTGTCACAGATTGTG
ATGGGGTGTGGTGGCAAACTGGCCGAAGTGAACCCGTACTGGTAAGCACG
GAGGGCGATGTGTCCACTGTTTGGAAGGCGTCCATGGCGTCGATGCGGGA
ATCCGATGATCTAGGATGGGTCGAATTGGGTAACTTCAGGTGCATCGAAC
ACTTTTTACGCCTCTCAACGTGGTCGCTTCCACAAATTGCTGTCGAGAAG
TGGATAAAGAGTCCTCCCATTTTGTCTGGTGTGGGTGCTACTTTATCAGA
GCTCATTCATTCTCCAGGATATCGGATGTATCGAACACAACTCTTCTATG
AGGCACATATCGGCGTGATTCTGTCCAAGATGAACGCTCAATTTAGAGAG
AAGAATGCGGACTCTGCTCATTATTTTGCAAATGGAGGACAGGTTTACCG
CCAGCACTTGACTGATGCTGCTGCGGTTACTTCGTCGAGAGCATCAATAG
CGCGGTAA
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