Ggra6407.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6407.t1
Unique Name	Ggra6407.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	564

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000918_pilon	contig	tig00000918_pilon:88523..90214 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	303518.XP_005740659.1
Preferred name	DUS3L
PFAMs	Dus,zf-CCCH
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K05544
GOs	GO:0002943,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016491,GO:0016627,GO:0017150,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0055114,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360
Evalue	7.53e-149
EggNOG OGs	COG0042@1\|root,KOG2333@2759\|Eukaryota,38F5X@33154\|Opisthokonta,3BFFI@33208\|Metazoa,3CZXN@33213\|Bilateria,485N2@7711\|Chordata,490TF@7742\|Vertebrata,49QST@7898\|Actinopterygii
EC	1.3.1.89
Description	Dihydrouridine synthase 3-like (S. cerevisiae)
COG category	J
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6407	Ggra6407	Gracilaria gracilis GNS1m male	gene	tig00000918_pilon 88523..90214 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6407.t1.start1	Ggra6407.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000918_pilon 88523..88525 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6407.t1.CDS1	Ggra6407.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000918_pilon 88523..90214 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6407.t1.exon1	Ggra6407.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000918_pilon 88523..90214 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6407.t1.stop1	Ggra6407.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000918_pilon 90212..90214 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6407.t1	Ggra6407.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000918_pilon 88523..90214 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000918_pilon:88523..90214+
coding sequence from alignment at tig00000918_pilon:88523..90214+

mRNA sequence

>Ggra6407.t1 ID=Ggra6407.t1|Name=Ggra6407.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=564bp
MGSAFSRADQPAPTHHAPPSLPLPLPASRKRNVSPQQELNSNKRPRSSEP
STHIHTRRPPAPAPKSARNANAVEDREEDIRSHLTVDAPVKPQYLLRTRK
NENGALVLDTRGVALYSPAFFDELGETARVEPEQGKLSARLEMSDDQKNF
LGFELRKELRKRRVELPLSKKVLPLWDEQSFESGVLEGVAGLTRTKKIDM
RQKLYLAPLTTVGNLPYRRVCKRLGADVTCGEMALASNLLKGQSSEWALL
RRHKSEDLFGVQIAGSNVETVTRAAELIADNCEIDFVELNAGCPIDIVFN
RGGGCSLMQRRNKFKRMVWSISRVVDIPVGVKVRMGVSLRSRNAHNLIPD
LAAVGASWITVHGRTRKQRYSKLADWQYIKDECAPAARRSGISLLGNGDV
YNWRDVVPYYEGGAHEGCGVESVMIARGALIKPWLFTEIKERRDWDIRSS
ERLELYREFVRYGLDHWGADERGVEKTRRFLLEWLSFLYRYIPIGIVEGG
SDTVLTMSHRAPFFRGRDELETLLGSHQSHDWVRITELLLGKTPEGFKFV
PRHKSNAWEASGT*

spliced messenger RNA

>Ggra6407.t1 ID=Ggra6407.t1|Name=Ggra6407.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1692bp|location=Sequence derived from alignment at tig00000918_pilon:88523..90214+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTCAGCGTTCTCCAGAGCGGATCAACCAGCTCCCACGCACCATGC
TCCGCCATCACTACCCCTCCCACTACCCGCCTCGCGAAAGCGCAACGTAA
GTCCGCAGCAGGAGCTCAATTCTAACAAGCGCCCTCGATCTTCCGAACCG
TCGACACACATCCACACGCGCCGCCCTCCAGCTCCTGCACCCAAATCAGC
CCGCAATGCCAACGCAGTCGAGGATCGCGAGGAAGACATTCGCTCCCACT
TGACCGTAGATGCTCCTGTCAAGCCGCAATATTTGCTACGAACGCGAAAG
AACGAAAATGGCGCTCTTGTGTTGGATACCCGTGGTGTTGCTCTGTATTC
TCCCGCTTTCTTCGATGAGCTTGGTGAGACTGCCCGCGTTGAACCCGAGC
AGGGGAAATTATCCGCTCGACTTGAGATGAGCGACGATCAGAAGAACTTT
CTTGGTTTCGAGTTGCGAAAGGAGCTACGAAAGCGTCGCGTTGAATTACC
ACTCAGTAAGAAGGTGCTGCCGTTATGGGACGAGCAGAGTTTTGAAAGTG
GTGTCCTTGAGGGCGTCGCTGGCTTGACGCGCACAAAGAAGATTGACATG
CGCCAAAAGCTATACCTTGCCCCGCTGACTACTGTTGGAAATCTTCCATA
CCGTCGCGTGTGTAAGAGGCTTGGCGCAGACGTCACTTGCGGAGAAATGG
CGCTTGCGAGCAACTTGTTAAAGGGTCAAAGTAGCGAGTGGGCATTACTG
AGGCGCCACAAGAGTGAGGATCTGTTTGGAGTGCAGATTGCTGGATCCAA
CGTCGAAACCGTCACTCGCGCTGCTGAGCTTATTGCAGACAATTGCGAGA
TCGATTTTGTTGAACTCAATGCGGGATGCCCGATTGACATCGTCTTCAAC
AGAGGTGGGGGATGCAGTTTAATGCAGCGACGGAACAAATTTAAGCGAAT
GGTTTGGAGTATCTCTCGCGTTGTGGACATTCCAGTCGGCGTAAAGGTGC
GCATGGGTGTTTCCCTACGCTCCAGAAACGCGCATAATTTGATCCCGGAT
CTAGCGGCTGTTGGGGCGAGTTGGATTACTGTTCATGGACGCACAAGAAA
ACAACGGTACTCTAAGCTTGCCGATTGGCAGTATATAAAAGATGAATGTG
CCCCGGCTGCTCGTCGTTCTGGCATCTCGCTTCTGGGAAACGGGGATGTT
TATAACTGGCGAGATGTGGTTCCGTACTATGAGGGGGGCGCACATGAAGG
ATGCGGTGTGGAGAGTGTTATGATTGCCCGTGGGGCCTTAATTAAGCCAT
GGTTATTCACGGAGATCAAGGAAAGACGTGACTGGGATATACGCAGCTCC
GAAAGGCTAGAACTGTATCGTGAGTTTGTGCGGTATGGCTTGGACCATTG
GGGTGCGGACGAACGCGGGGTAGAGAAGACTCGGCGATTCCTGTTGGAGT
GGTTGTCCTTTTTATATCGATACATCCCAATAGGTATCGTTGAGGGTGGT
TCAGACACAGTATTGACAATGTCTCATAGAGCGCCGTTTTTCCGTGGTCG
AGATGAGCTCGAAACTCTACTGGGTTCTCATCAGAGCCATGACTGGGTAC
GAATAACAGAGCTGTTGCTGGGAAAGACTCCGGAAGGATTCAAGTTTGTA
CCCCGACACAAGAGTAATGCATGGGAAGCTTCAGGGACATGA

protein sequence of Ggra6407.t1

>Ggra6407.t1 ID=Ggra6407.t1|Name=Ggra6407.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=564bp
MGSAFSRADQPAPTHHAPPSLPLPLPASRKRNVSPQQELNSNKRPRSSEP
STHIHTRRPPAPAPKSARNANAVEDREEDIRSHLTVDAPVKPQYLLRTRK
NENGALVLDTRGVALYSPAFFDELGETARVEPEQGKLSARLEMSDDQKNF
LGFELRKELRKRRVELPLSKKVLPLWDEQSFESGVLEGVAGLTRTKKIDM
RQKLYLAPLTTVGNLPYRRVCKRLGADVTCGEMALASNLLKGQSSEWALL
RRHKSEDLFGVQIAGSNVETVTRAAELIADNCEIDFVELNAGCPIDIVFN
RGGGCSLMQRRNKFKRMVWSISRVVDIPVGVKVRMGVSLRSRNAHNLIPD
LAAVGASWITVHGRTRKQRYSKLADWQYIKDECAPAARRSGISLLGNGDV
YNWRDVVPYYEGGAHEGCGVESVMIARGALIKPWLFTEIKERRDWDIRSS
ERLELYREFVRYGLDHWGADERGVEKTRRFLLEWLSFLYRYIPIGIVEGG
SDTVLTMSHRAPFFRGRDELETLLGSHQSHDWVRITELLLGKTPEGFKFV
PRHKSNAWEASGT*

mRNA from alignment at tig00000918_pilon:88523..90214+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6407.t1 ID=Ggra6407.t1|Name=Ggra6407.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1692bp|location=Sequence derived from alignment at tig00000918_pilon:88523..90214+ (Gracilaria gracilis GNS1m male)
ATGGGCTCAGCGTTCTCCAGAGCGGATCAACCAGCTCCCACGCACCATGC
TCCGCCATCACTACCCCTCCCACTACCCGCCTCGCGAAAGCGCAACGTAA
GTCCGCAGCAGGAGCTCAATTCTAACAAGCGCCCTCGATCTTCCGAACCG
TCGACACACATCCACACGCGCCGCCCTCCAGCTCCTGCACCCAAATCAGC
CCGCAATGCCAACGCAGTCGAGGATCGCGAGGAAGACATTCGCTCCCACT
TGACCGTAGATGCTCCTGTCAAGCCGCAATATTTGCTACGAACGCGAAAG
AACGAAAATGGCGCTCTTGTGTTGGATACCCGTGGTGTTGCTCTGTATTC
TCCCGCTTTCTTCGATGAGCTTGGTGAGACTGCCCGCGTTGAACCCGAGC
AGGGGAAATTATCCGCTCGACTTGAGATGAGCGACGATCAGAAGAACTTT
CTTGGTTTCGAGTTGCGAAAGGAGCTACGAAAGCGTCGCGTTGAATTACC
ACTCAGTAAGAAGGTGCTGCCGTTATGGGACGAGCAGAGTTTTGAAAGTG
GTGTCCTTGAGGGCGTCGCTGGCTTGACGCGCACAAAGAAGATTGACATG
CGCCAAAAGCTATACCTTGCCCCGCTGACTACTGTTGGAAATCTTCCATA
CCGTCGCGTGTGTAAGAGGCTTGGCGCAGACGTCACTTGCGGAGAAATGG
CGCTTGCGAGCAACTTGTTAAAGGGTCAAAGTAGCGAGTGGGCATTACTG
AGGCGCCACAAGAGTGAGGATCTGTTTGGAGTGCAGATTGCTGGATCCAA
CGTCGAAACCGTCACTCGCGCTGCTGAGCTTATTGCAGACAATTGCGAGA
TCGATTTTGTTGAACTCAATGCGGGATGCCCGATTGACATCGTCTTCAAC
AGAGGTGGGGGATGCAGTTTAATGCAGCGACGGAACAAATTTAAGCGAAT
GGTTTGGAGTATCTCTCGCGTTGTGGACATTCCAGTCGGCGTAAAGGTGC
GCATGGGTGTTTCCCTACGCTCCAGAAACGCGCATAATTTGATCCCGGAT
CTAGCGGCTGTTGGGGCGAGTTGGATTACTGTTCATGGACGCACAAGAAA
ACAACGGTACTCTAAGCTTGCCGATTGGCAGTATATAAAAGATGAATGTG
CCCCGGCTGCTCGTCGTTCTGGCATCTCGCTTCTGGGAAACGGGGATGTT
TATAACTGGCGAGATGTGGTTCCGTACTATGAGGGGGGCGCACATGAAGG
ATGCGGTGTGGAGAGTGTTATGATTGCCCGTGGGGCCTTAATTAAGCCAT
GGTTATTCACGGAGATCAAGGAAAGACGTGACTGGGATATACGCAGCTCC
GAAAGGCTAGAACTGTATCGTGAGTTTGTGCGGTATGGCTTGGACCATTG
GGGTGCGGACGAACGCGGGGTAGAGAAGACTCGGCGATTCCTGTTGGAGT
GGTTGTCCTTTTTATATCGATACATCCCAATAGGTATCGTTGAGGGTGGT
TCAGACACAGTATTGACAATGTCTCATAGAGCGCCGTTTTTCCGTGGTCG
AGATGAGCTCGAAACTCTACTGGGTTCTCATCAGAGCCATGACTGGGTAC
GAATAACAGAGCTGTTGCTGGGAAAGACTCCGGAAGGATTCAAGTTTGTA
CCCCGACACAAGAGTAATGCATGGGAAGCTTCAGGGACATGA

Coding sequence (CDS) from alignment at tig00000918_pilon:88523..90214+

>Ggra6407.t1 ID=Ggra6407.t1|Name=Ggra6407.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1692bp|location=Sequence derived from alignment at tig00000918_pilon:88523..90214+ (Gracilaria gracilis GNS1m male)
ATGGGCTCAGCGTTCTCCAGAGCGGATCAACCAGCTCCCACGCACCATGC
TCCGCCATCACTACCCCTCCCACTACCCGCCTCGCGAAAGCGCAACGTAA
GTCCGCAGCAGGAGCTCAATTCTAACAAGCGCCCTCGATCTTCCGAACCG
TCGACACACATCCACACGCGCCGCCCTCCAGCTCCTGCACCCAAATCAGC
CCGCAATGCCAACGCAGTCGAGGATCGCGAGGAAGACATTCGCTCCCACT
TGACCGTAGATGCTCCTGTCAAGCCGCAATATTTGCTACGAACGCGAAAG
AACGAAAATGGCGCTCTTGTGTTGGATACCCGTGGTGTTGCTCTGTATTC
TCCCGCTTTCTTCGATGAGCTTGGTGAGACTGCCCGCGTTGAACCCGAGC
AGGGGAAATTATCCGCTCGACTTGAGATGAGCGACGATCAGAAGAACTTT
CTTGGTTTCGAGTTGCGAAAGGAGCTACGAAAGCGTCGCGTTGAATTACC
ACTCAGTAAGAAGGTGCTGCCGTTATGGGACGAGCAGAGTTTTGAAAGTG
GTGTCCTTGAGGGCGTCGCTGGCTTGACGCGCACAAAGAAGATTGACATG
CGCCAAAAGCTATACCTTGCCCCGCTGACTACTGTTGGAAATCTTCCATA
CCGTCGCGTGTGTAAGAGGCTTGGCGCAGACGTCACTTGCGGAGAAATGG
CGCTTGCGAGCAACTTGTTAAAGGGTCAAAGTAGCGAGTGGGCATTACTG
AGGCGCCACAAGAGTGAGGATCTGTTTGGAGTGCAGATTGCTGGATCCAA
CGTCGAAACCGTCACTCGCGCTGCTGAGCTTATTGCAGACAATTGCGAGA
TCGATTTTGTTGAACTCAATGCGGGATGCCCGATTGACATCGTCTTCAAC
AGAGGTGGGGGATGCAGTTTAATGCAGCGACGGAACAAATTTAAGCGAAT
GGTTTGGAGTATCTCTCGCGTTGTGGACATTCCAGTCGGCGTAAAGGTGC
GCATGGGTGTTTCCCTACGCTCCAGAAACGCGCATAATTTGATCCCGGAT
CTAGCGGCTGTTGGGGCGAGTTGGATTACTGTTCATGGACGCACAAGAAA
ACAACGGTACTCTAAGCTTGCCGATTGGCAGTATATAAAAGATGAATGTG
CCCCGGCTGCTCGTCGTTCTGGCATCTCGCTTCTGGGAAACGGGGATGTT
TATAACTGGCGAGATGTGGTTCCGTACTATGAGGGGGGCGCACATGAAGG
ATGCGGTGTGGAGAGTGTTATGATTGCCCGTGGGGCCTTAATTAAGCCAT
GGTTATTCACGGAGATCAAGGAAAGACGTGACTGGGATATACGCAGCTCC
GAAAGGCTAGAACTGTATCGTGAGTTTGTGCGGTATGGCTTGGACCATTG
GGGTGCGGACGAACGCGGGGTAGAGAAGACTCGGCGATTCCTGTTGGAGT
GGTTGTCCTTTTTATATCGATACATCCCAATAGGTATCGTTGAGGGTGGT
TCAGACACAGTATTGACAATGTCTCATAGAGCGCCGTTTTTCCGTGGTCG
AGATGAGCTCGAAACTCTACTGGGTTCTCATCAGAGCCATGACTGGGTAC
GAATAACAGAGCTGTTGCTGGGAAAGACTCCGGAAGGATTCAAGTTTGTA
CCCCGACACAAGAGTAATGCATGGGAAGCTTCAGGGACATGA