Ggra6406.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6406.t1
Unique NameGgra6406.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length410
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000918_piloncontigtig00000918_pilon:85751..86980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S3_177V6.3
PFAMsPRK
Max annot lvl35493|Streptophyta
KEGG rclassRC00002,RC00017
KEGG koko:K15918
KEGG ReactionR01514
KEGG Pathwayko00260,ko00561,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00561,map00630,map01100,map01110,map01130,map01200
KEGG ModuleM00532
GOsGO:0003674,GO:0003824,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0008887,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009853,GO:0009941,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0031967,GO:0031975,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Evalue5.02e-78
EggNOG OGsCOG4240@1|root,KOG2878@2759|Eukaryota,37NTW@33090|Viridiplantae,3GAT4@35493|Streptophyta
EC2.7.1.31
DescriptionD-glycerate 3-kinase
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6406Ggra6406Gracilaria gracilis GNS1m malegenetig00000918_pilon 85751..86980 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6406.t1.stop1Ggra6406.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000918_pilon 85751..85753 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6406.t1.CDS1Ggra6406.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000918_pilon 85751..86980 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6406.t1.exon1Ggra6406.t1.exon1Gracilaria gracilis GNS1m maleexontig00000918_pilon 85751..86980 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6406.t1.start1Ggra6406.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000918_pilon 86978..86980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6406.t1Ggra6406.t1Gracilaria gracilis GNS1m malepolypeptidetig00000918_pilon 85751..86980 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6406.t1 ID=Ggra6406.t1|Name=Ggra6406.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=410bp
MNAFVSLPNIVSNGASAQFRPSRGIFTPNSSMRPTSFVTPLHVRALPLAQ
NGPSMALDKSIQSFSPESKTDIRRSRLADLIVNGPVFKAADLIISDLSAE
EGCSTDARETCLDDWLYTGAILEEALGGQANDVRVYQYYLPIYFWILREL
DRHHEFLASSSSRPRPFILGFCCPQGGGKTTMTTFMEKLLRTAGRSVQIA
SLDDFYLTNAEQRAVAAKNPGNRLMQYRGMPGTHDLGLLNDTLDALRRGQ
EVSIPRYDKTAFAGRGDRAPKGNWKHISDTTDVVLFEGWCLGFEPVPEDQ
LVDPELAVVNDALHEFVKMYKRFDGMFIIEIGNMDWVFDWRLQAERGTRA
AGRPGLTDEQVTDFVGRFMPAYKQYSPNLYDREVPLFPRHELHIQIDEMR
RPVQRKKDC*
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spliced messenger RNA

>Ggra6406.t1 ID=Ggra6406.t1|Name=Ggra6406.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1230bp|location=Sequence derived from alignment at tig00000918_pilon:85751..86980- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCCTTCGTCTCTCTTCCCAACATCGTCTCGAACGGCGCGTCGGC
ACAATTTCGCCCGTCGAGGGGTATCTTCACTCCCAATTCATCCATGCGCC
CCACGTCCTTCGTCACACCGTTGCACGTCCGTGCCCTGCCGTTAGCTCAA
AATGGCCCTTCCATGGCGCTGGACAAGTCTATCCAGTCATTTTCCCCGGA
ATCAAAAACAGATATTCGCAGAAGCCGCCTTGCCGATCTAATCGTAAACG
GACCTGTTTTCAAAGCTGCGGACCTTATTATCTCCGACCTTTCTGCTGAA
GAGGGTTGCTCGACGGATGCGCGCGAGACTTGTCTGGACGACTGGCTGTA
TACGGGTGCAATCCTGGAGGAGGCTCTCGGAGGCCAAGCTAATGACGTTC
GAGTGTATCAATACTACCTCCCTATATATTTTTGGATCCTGCGTGAACTT
GATCGCCACCACGAGTTTCTCGCCAGCTCCAGTTCTCGACCTCGTCCCTT
CATTCTCGGGTTTTGCTGCCCTCAGGGTGGTGGCAAAACCACCATGACCA
CCTTCATGGAAAAGCTACTGCGCACAGCAGGTAGAAGCGTCCAGATTGCC
AGTCTGGACGACTTCTACTTGACTAACGCCGAACAGCGAGCGGTCGCAGC
CAAGAACCCAGGCAACAGGCTGATGCAGTATCGTGGAATGCCTGGAACTC
ACGACCTTGGCCTTCTCAATGACACCCTGGATGCTCTCCGCCGAGGCCAG
GAAGTCAGTATCCCGAGGTACGACAAAACGGCCTTCGCCGGGCGCGGTGA
CCGTGCCCCAAAAGGCAACTGGAAGCATATTTCCGATACAACAGATGTGG
TCTTGTTTGAGGGTTGGTGTCTGGGCTTTGAACCTGTTCCGGAGGACCAA
CTCGTGGATCCGGAGCTCGCTGTTGTCAATGATGCTCTTCATGAGTTTGT
CAAGATGTACAAGCGCTTCGACGGAATGTTCATTATTGAGATCGGCAATA
TGGACTGGGTGTTCGACTGGCGCCTCCAAGCAGAACGCGGTACGCGGGCT
GCAGGCCGTCCAGGCTTGACTGATGAGCAAGTAACCGACTTTGTCGGGCG
ATTCATGCCGGCATACAAACAGTACTCTCCCAATCTGTACGACAGAGAGG
TGCCGCTATTCCCGCGGCATGAGCTACATATACAAATCGATGAGATGCGG
AGACCTGTGCAACGCAAGAAGGATTGCTAA
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protein sequence of Ggra6406.t1

>Ggra6406.t1 ID=Ggra6406.t1|Name=Ggra6406.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=410bp
MNAFVSLPNIVSNGASAQFRPSRGIFTPNSSMRPTSFVTPLHVRALPLAQ
NGPSMALDKSIQSFSPESKTDIRRSRLADLIVNGPVFKAADLIISDLSAE
EGCSTDARETCLDDWLYTGAILEEALGGQANDVRVYQYYLPIYFWILREL
DRHHEFLASSSSRPRPFILGFCCPQGGGKTTMTTFMEKLLRTAGRSVQIA
SLDDFYLTNAEQRAVAAKNPGNRLMQYRGMPGTHDLGLLNDTLDALRRGQ
EVSIPRYDKTAFAGRGDRAPKGNWKHISDTTDVVLFEGWCLGFEPVPEDQ
LVDPELAVVNDALHEFVKMYKRFDGMFIIEIGNMDWVFDWRLQAERGTRA
AGRPGLTDEQVTDFVGRFMPAYKQYSPNLYDREVPLFPRHELHIQIDEMR
RPVQRKKDC*
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mRNA from alignment at tig00000918_pilon:85751..86980-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6406.t1 ID=Ggra6406.t1|Name=Ggra6406.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1230bp|location=Sequence derived from alignment at tig00000918_pilon:85751..86980- (Gracilaria gracilis GNS1m male)
ATGAACGCCTTCGTCTCTCTTCCCAACATCGTCTCGAACGGCGCGTCGGC
ACAATTTCGCCCGTCGAGGGGTATCTTCACTCCCAATTCATCCATGCGCC
CCACGTCCTTCGTCACACCGTTGCACGTCCGTGCCCTGCCGTTAGCTCAA
AATGGCCCTTCCATGGCGCTGGACAAGTCTATCCAGTCATTTTCCCCGGA
ATCAAAAACAGATATTCGCAGAAGCCGCCTTGCCGATCTAATCGTAAACG
GACCTGTTTTCAAAGCTGCGGACCTTATTATCTCCGACCTTTCTGCTGAA
GAGGGTTGCTCGACGGATGCGCGCGAGACTTGTCTGGACGACTGGCTGTA
TACGGGTGCAATCCTGGAGGAGGCTCTCGGAGGCCAAGCTAATGACGTTC
GAGTGTATCAATACTACCTCCCTATATATTTTTGGATCCTGCGTGAACTT
GATCGCCACCACGAGTTTCTCGCCAGCTCCAGTTCTCGACCTCGTCCCTT
CATTCTCGGGTTTTGCTGCCCTCAGGGTGGTGGCAAAACCACCATGACCA
CCTTCATGGAAAAGCTACTGCGCACAGCAGGTAGAAGCGTCCAGATTGCC
AGTCTGGACGACTTCTACTTGACTAACGCCGAACAGCGAGCGGTCGCAGC
CAAGAACCCAGGCAACAGGCTGATGCAGTATCGTGGAATGCCTGGAACTC
ACGACCTTGGCCTTCTCAATGACACCCTGGATGCTCTCCGCCGAGGCCAG
GAAGTCAGTATCCCGAGGTACGACAAAACGGCCTTCGCCGGGCGCGGTGA
CCGTGCCCCAAAAGGCAACTGGAAGCATATTTCCGATACAACAGATGTGG
TCTTGTTTGAGGGTTGGTGTCTGGGCTTTGAACCTGTTCCGGAGGACCAA
CTCGTGGATCCGGAGCTCGCTGTTGTCAATGATGCTCTTCATGAGTTTGT
CAAGATGTACAAGCGCTTCGACGGAATGTTCATTATTGAGATCGGCAATA
TGGACTGGGTGTTCGACTGGCGCCTCCAAGCAGAACGCGGTACGCGGGCT
GCAGGCCGTCCAGGCTTGACTGATGAGCAAGTAACCGACTTTGTCGGGCG
ATTCATGCCGGCATACAAACAGTACTCTCCCAATCTGTACGACAGAGAGG
TGCCGCTATTCCCGCGGCATGAGCTACATATACAAATCGATGAGATGCGG
AGACCTGTGCAACGCAAGAAGGATTGCTAA
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Coding sequence (CDS) from alignment at tig00000918_pilon:85751..86980-

>Ggra6406.t1 ID=Ggra6406.t1|Name=Ggra6406.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1230bp|location=Sequence derived from alignment at tig00000918_pilon:85751..86980- (Gracilaria gracilis GNS1m male)
ATGAACGCCTTCGTCTCTCTTCCCAACATCGTCTCGAACGGCGCGTCGGC
ACAATTTCGCCCGTCGAGGGGTATCTTCACTCCCAATTCATCCATGCGCC
CCACGTCCTTCGTCACACCGTTGCACGTCCGTGCCCTGCCGTTAGCTCAA
AATGGCCCTTCCATGGCGCTGGACAAGTCTATCCAGTCATTTTCCCCGGA
ATCAAAAACAGATATTCGCAGAAGCCGCCTTGCCGATCTAATCGTAAACG
GACCTGTTTTCAAAGCTGCGGACCTTATTATCTCCGACCTTTCTGCTGAA
GAGGGTTGCTCGACGGATGCGCGCGAGACTTGTCTGGACGACTGGCTGTA
TACGGGTGCAATCCTGGAGGAGGCTCTCGGAGGCCAAGCTAATGACGTTC
GAGTGTATCAATACTACCTCCCTATATATTTTTGGATCCTGCGTGAACTT
GATCGCCACCACGAGTTTCTCGCCAGCTCCAGTTCTCGACCTCGTCCCTT
CATTCTCGGGTTTTGCTGCCCTCAGGGTGGTGGCAAAACCACCATGACCA
CCTTCATGGAAAAGCTACTGCGCACAGCAGGTAGAAGCGTCCAGATTGCC
AGTCTGGACGACTTCTACTTGACTAACGCCGAACAGCGAGCGGTCGCAGC
CAAGAACCCAGGCAACAGGCTGATGCAGTATCGTGGAATGCCTGGAACTC
ACGACCTTGGCCTTCTCAATGACACCCTGGATGCTCTCCGCCGAGGCCAG
GAAGTCAGTATCCCGAGGTACGACAAAACGGCCTTCGCCGGGCGCGGTGA
CCGTGCCCCAAAAGGCAACTGGAAGCATATTTCCGATACAACAGATGTGG
TCTTGTTTGAGGGTTGGTGTCTGGGCTTTGAACCTGTTCCGGAGGACCAA
CTCGTGGATCCGGAGCTCGCTGTTGTCAATGATGCTCTTCATGAGTTTGT
CAAGATGTACAAGCGCTTCGACGGAATGTTCATTATTGAGATCGGCAATA
TGGACTGGGTGTTCGACTGGCGCCTCCAAGCAGAACGCGGTACGCGGGCT
GCAGGCCGTCCAGGCTTGACTGATGAGCAAGTAACCGACTTTGTCGGGCG
ATTCATGCCGGCATACAAACAGTACTCTCCCAATCTGTACGACAGAGAGG
TGCCGCTATTCCCGCGGCATGAGCTACATATACAAATCGATGAGATGCGG
AGACCTGTGCAACGCAAGAAGGATTGCTAA
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