Ggra6393.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6393.t1
Unique NameGgra6393.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length332
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000861_piloncontigtig00000861_pilon:139615..141154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6393Ggra6393Gracilaria gracilis GNS1m malegenetig00000861_pilon 139615..141154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6393.t1Ggra6393.t1Gracilaria gracilis GNS1m malepolypeptidetig00000861_pilon 139615..141154 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6393.t1.start1Ggra6393.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000861_pilon 139615..139617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6393.t1.CDS1Ggra6393.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000861_pilon 139615..139875 +
Ggra6393.t1.CDS2Ggra6393.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000861_pilon 140420..141154 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6393.t1.exon1Ggra6393.t1.exon1Gracilaria gracilis GNS1m maleexontig00000861_pilon 139615..139875 +
Ggra6393.t1.exon2Ggra6393.t1.exon2Gracilaria gracilis GNS1m maleexontig00000861_pilon 140420..141154 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6393.t1.intron1Ggra6393.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000861_pilon 139876..140419 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6393.t1.stop1Ggra6393.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000861_pilon 141152..141154 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6393.t1 ID=Ggra6393.t1|Name=Ggra6393.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=332bp
MVTCANQTALASVLSRRPFRNVQDCIALSSDGKRVASVHSISNAFQLYDT
LTGKPVGLPLVGHNKSVLCIAISSDGRRIASGSYDQARLVHTGKILDVAV
SGNGGRIVSLCYQRRSYVWDVVSGTVSPKALNGDTGTLTAVGISLDGNCI
VTGSNDRRVRVWNANQREMAMAPLTGHTQFIFGVVMSSDASRIISQSFTD
IRVWDAHTGEAIGTPIYPVYYRNYFRIEAVDEYGMNIVTQGLLAESSLWD
MAQGVCVLSQRDAAWQVTVDALALRWLPRRSWQPVRWRVNHSDGHNGSAI
TLATCDIPVENVDGGDVYFSTYFESRCNIVR*
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spliced messenger RNA

>Ggra6393.t1 ID=Ggra6393.t1|Name=Ggra6393.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=996bp|location=Sequence derived from alignment at tig00000861_pilon:139615..141154+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTACCTGCGCCAACCAGACTGCGCTTGCATCAGTTCTTAGTCGCAG
GCCTTTTCGAAATGTTCAGGATTGCATTGCGCTGAGCTCCGACGGAAAAC
GTGTGGCATCCGTTCACTCCATCAGCAATGCTTTTCAACTCTATGATACC
CTCACTGGGAAGCCGGTGGGATTACCTCTGGTGGGACACAATAAGTCTGT
GCTCTGCATAGCCATCAGCTCCGACGGCAGGCGAATAGCGTCGGGGTCTT
ATGACCAAGCGCGGCTTGTTCACACTGGGAAGATTTTAGATGTCGCAGTT
AGTGGTAATGGAGGTCGTATTGTTTCTCTTTGCTACCAAAGAAGAAGCTA
CGTGTGGGATGTGGTGAGCGGCACGGTGAGCCCAAAGGCACTCAATGGTG
ATACCGGTACTCTTACGGCTGTCGGGATCAGTTTGGACGGCAACTGTATT
GTAACCGGATCCAACGATAGAAGGGTGCGGGTTTGGAACGCGAATCAGAG
GGAGATGGCCATGGCGCCACTCACTGGTCACACCCAGTTCATTTTCGGTG
TCGTGATGAGTTCGGATGCAAGTCGTATCATTTCACAATCATTCACAGAC
ATTCGAGTCTGGGACGCGCACACTGGCGAAGCTATTGGCACGCCGATATA
TCCAGTTTATTATCGCAATTACTTCCGGATTGAGGCGGTGGATGAGTATG
GAATGAACATTGTTACGCAGGGTCTATTGGCTGAAAGCAGCCTGTGGGAT
ATGGCTCAAGGTGTGTGTGTACTGAGCCAGCGGGACGCCGCATGGCAAGT
CACCGTCGATGCGCTTGCGCTCCGCTGGTTGCCCCGTAGATCGTGGCAAC
CCGTGAGATGGCGAGTGAATCATAGCGATGGTCATAATGGTTCTGCAATA
ACACTGGCCACTTGCGACATTCCAGTGGAAAACGTTGACGGCGGTGATGT
GTACTTCTCTACATATTTCGAAAGCAGGTGCAATATTGTGCGATAG
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protein sequence of Ggra6393.t1

>Ggra6393.t1 ID=Ggra6393.t1|Name=Ggra6393.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=332bp
MVTCANQTALASVLSRRPFRNVQDCIALSSDGKRVASVHSISNAFQLYDT
LTGKPVGLPLVGHNKSVLCIAISSDGRRIASGSYDQARLVHTGKILDVAV
SGNGGRIVSLCYQRRSYVWDVVSGTVSPKALNGDTGTLTAVGISLDGNCI
VTGSNDRRVRVWNANQREMAMAPLTGHTQFIFGVVMSSDASRIISQSFTD
IRVWDAHTGEAIGTPIYPVYYRNYFRIEAVDEYGMNIVTQGLLAESSLWD
MAQGVCVLSQRDAAWQVTVDALALRWLPRRSWQPVRWRVNHSDGHNGSAI
TLATCDIPVENVDGGDVYFSTYFESRCNIVR*
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mRNA from alignment at tig00000861_pilon:139615..141154+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6393.t1 ID=Ggra6393.t1|Name=Ggra6393.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1540bp|location=Sequence derived from alignment at tig00000861_pilon:139615..141154+ (Gracilaria gracilis GNS1m male)
ATGGTTACCTGCGCCAACCAGACTGCGCTTGCATCAGTTCTTAGTCGCAG
GCCTTTTCGAAATGTTCAGGATTGCATTGCGCTGAGCTCCGACGGAAAAC
GTGTGGCATCCGTTCACTCCATCAGCAATGCTTTTCAACTCTATGATACC
CTCACTGGGAAGCCGGTGGGATTACCTCTGGTGGGACACAATAAGTCTGT
GCTCTGCATAGCCATCAGCTCCGACGGCAGGCGAATAGCGTCGGGGTCTT
ATGACCAAGCGGTATGTGTTTGGAATAACTCCTTGTATCCATTCGCGAAG
CGTCTGATCGGACACAAAGGAATGGTGACATGCATTGAATTCAGTGGGAA
ACGGAAACCGCCttgtgtcaggatccatggacaccatgctgcgagtatgg
gacgtgagcagtggcgaagaggtcacacacccgctcgtagggcactcttg
ttttgtggtgtgcgtttctgtgagctgggacggcaatcgtattgtgtccg
ggtcagcagacggtaccgtacggctttgggATGTGCGCAACAAACAAGCA
CTCACTCTGCAGCTCGCTGGGCACACCCGCTGTATTGGGACCATCGCTAT
GGATGAAGAGGCAACGCTcattatttctggatccaatgacggcactgttc
gcatatgggatgctcaagacgccgaggagatggtcacacatcctctggtc
ggccacggtgatgagattaagaggctcattgtgagcgagaatggcaatcg
tattgtaacgatttctgatgacaaaacgctgcgagtgtgggaagcgaTCA
CACAGCGGCTTGTTCACACTGGGAAGATTTTAGATGTCGCAGTTAGTGGT
AATGGAGGTCGTATTGTTTCTCTTTGCTACCAAAGAAGAAGCTACGTGTG
GGATGTGGTGAGCGGCACGGTGAGCCCAAAGGCACTCAATGGTGATACCG
GTACTCTTACGGCTGTCGGGATCAGTTTGGACGGCAACTGTATTGTAACC
GGATCCAACGATAGAAGGGTGCGGGTTTGGAACGCGAATCAGAGGGAGAT
GGCCATGGCGCCACTCACTGGTCACACCCAGTTCATTTTCGGTGTCGTGA
TGAGTTCGGATGCAAGTCGTATCATTTCACAATCATTCACAGACATTCGA
GTCTGGGACGCGCACACTGGCGAAGCTATTGGCACGCCGATATATCCAGT
TTATTATCGCAATTACTTCCGGATTGAGGCGGTGGATGAGTATGGAATGA
ACATTGTTACGCAGGGTCTATTGGCTGAAAGCAGCCTGTGGGATATGGCT
CAAGGTGTGTGTGTACTGAGCCAGCGGGACGCCGCATGGCAAGTCACCGT
CGATGCGCTTGCGCTCCGCTGGTTGCCCCGTAGATCGTGGCAACCCGTGA
GATGGCGAGTGAATCATAGCGATGGTCATAATGGTTCTGCAATAACACTG
GCCACTTGCGACATTCCAGTGGAAAACGTTGACGGCGGTGATGTGTACTT
CTCTACATATTTCGAAAGCAGGTGCAATATTGTGCGATAG
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Coding sequence (CDS) from alignment at tig00000861_pilon:139615..141154+

>Ggra6393.t1 ID=Ggra6393.t1|Name=Ggra6393.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=996bp|location=Sequence derived from alignment at tig00000861_pilon:139615..141154+ (Gracilaria gracilis GNS1m male)
ATGGTTACCTGCGCCAACCAGACTGCGCTTGCATCAGTTCTTAGTCGCAG
GCCTTTTCGAAATGTTCAGGATTGCATTGCGCTGAGCTCCGACGGAAAAC
GTGTGGCATCCGTTCACTCCATCAGCAATGCTTTTCAACTCTATGATACC
CTCACTGGGAAGCCGGTGGGATTACCTCTGGTGGGACACAATAAGTCTGT
GCTCTGCATAGCCATCAGCTCCGACGGCAGGCGAATAGCGTCGGGGTCTT
ATGACCAAGCGCGGCTTGTTCACACTGGGAAGATTTTAGATGTCGCAGTT
AGTGGTAATGGAGGTCGTATTGTTTCTCTTTGCTACCAAAGAAGAAGCTA
CGTGTGGGATGTGGTGAGCGGCACGGTGAGCCCAAAGGCACTCAATGGTG
ATACCGGTACTCTTACGGCTGTCGGGATCAGTTTGGACGGCAACTGTATT
GTAACCGGATCCAACGATAGAAGGGTGCGGGTTTGGAACGCGAATCAGAG
GGAGATGGCCATGGCGCCACTCACTGGTCACACCCAGTTCATTTTCGGTG
TCGTGATGAGTTCGGATGCAAGTCGTATCATTTCACAATCATTCACAGAC
ATTCGAGTCTGGGACGCGCACACTGGCGAAGCTATTGGCACGCCGATATA
TCCAGTTTATTATCGCAATTACTTCCGGATTGAGGCGGTGGATGAGTATG
GAATGAACATTGTTACGCAGGGTCTATTGGCTGAAAGCAGCCTGTGGGAT
ATGGCTCAAGGTGTGTGTGTACTGAGCCAGCGGGACGCCGCATGGCAAGT
CACCGTCGATGCGCTTGCGCTCCGCTGGTTGCCCCGTAGATCGTGGCAAC
CCGTGAGATGGCGAGTGAATCATAGCGATGGTCATAATGGTTCTGCAATA
ACACTGGCCACTTGCGACATTCCAGTGGAAAACGTTGACGGCGGTGATGT
GTACTTCTCTACATATTTCGAAAGCAGGTGCAATATTGTGCGATAG
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