Ggra6392.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6392.t1
Unique NameGgra6392.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length147
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000861_piloncontigtig00000861_pilon:136337..137360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6392Ggra6392Gracilaria gracilis GNS1m malegenetig00000861_pilon 136337..137360 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6392.t1Ggra6392.t1Gracilaria gracilis GNS1m malepolypeptidetig00000861_pilon 136337..137360 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6392.t1.stop1Ggra6392.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000861_pilon 136337..136339 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6392.t1.CDS1Ggra6392.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000861_pilon 136337..136522 -
Ggra6392.t1.CDS2Ggra6392.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000861_pilon 136607..136699 -
Ggra6392.t1.CDS3Ggra6392.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000861_pilon 137199..137360 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6392.t1.exon1Ggra6392.t1.exon1Gracilaria gracilis GNS1m maleexontig00000861_pilon 136337..136522 -
Ggra6392.t1.exon2Ggra6392.t1.exon2Gracilaria gracilis GNS1m maleexontig00000861_pilon 136607..136699 -
Ggra6392.t1.exon3Ggra6392.t1.exon3Gracilaria gracilis GNS1m maleexontig00000861_pilon 137199..137360 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6392.t1.intron1Ggra6392.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000861_pilon 136523..136606 -
Ggra6392.t1.intron2Ggra6392.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000861_pilon 136700..137198 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6392.t1.start1Ggra6392.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000861_pilon 137358..137360 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6392.t1 ID=Ggra6392.t1|Name=Ggra6392.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=147bp
MLNHSCNGNKGHLFCISYMAVALRSLGESETNPKLISALINPFPSPRWGS
PETALIETLATITKYDRRVINRRDGKTAAHVLRDWVSGGWIDIYEAELTA
EGIVALFAEVKKGDKLTLVKNMGDGDWANAAYIGLERVVMCTDRRA*
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spliced messenger RNA

>Ggra6392.t1 ID=Ggra6392.t1|Name=Ggra6392.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=441bp|location=Sequence derived from alignment at tig00000861_pilon:136337..137360- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAACCACTCATGTAATGGCAACAAGGGCCATTTGTTTTGCATTTC
ATATATGGCTGTTGCCCTGCGCTCATTGGGCGAATCTGAGACCAATCCCA
AGCTAATCTCAGCTCTCATAAATCCATTTCCGAGTCCTCGCTGGGGGTCT
CCTGAAACTGCCTTAATTGAGACTCTCGCCACTATCACCAAGTACGACAG
ACGTGTGATTAACCGACGCGATGGCAAGACGGCCGCTCACGTGCTTCGTG
ACTGGGTGAGCGGAGGCTGGATTGATATATACGAGGCAGAACTCACAGCG
GAAGGCATTGTGGCTCTGTTTGCGGAAGTGAAGAAGGGTGACAAACTAAC
GTTGGTGAAGAATATGGGTGATGGTGACTGGGCGAATGCGGCGTATATTG
GATTGGAACGTGTCGTGATGTGCACAGACAGGCGCGCATAG
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protein sequence of Ggra6392.t1

>Ggra6392.t1 ID=Ggra6392.t1|Name=Ggra6392.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=147bp
MLNHSCNGNKGHLFCISYMAVALRSLGESETNPKLISALINPFPSPRWGS
PETALIETLATITKYDRRVINRRDGKTAAHVLRDWVSGGWIDIYEAELTA
EGIVALFAEVKKGDKLTLVKNMGDGDWANAAYIGLERVVMCTDRRA*
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mRNA from alignment at tig00000861_pilon:136337..137360-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6392.t1 ID=Ggra6392.t1|Name=Ggra6392.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1024bp|location=Sequence derived from alignment at tig00000861_pilon:136337..137360- (Gracilaria gracilis GNS1m male)
ATGCTCAACCACTCATGTAATGGCAACAAGGGCCATTTGTTTTGCATTTC
ATATATGGCTGTTGCCCTGCGCTCATTGGGCGAATCTGAGACCAATCCCA
AGCTAATCTCAGCTCTCATAAATCCATTTCCGAGTCCTCGCTGGGGGTCT
CCTGAAACTGCCGTAATTCACAAATCCCAAACGGAAAATGTTGCCTGGCA
CTACCAGGGGTACCGTTAGAGCAACTTTTTGCGTAAATGGGAAATACGTT
TTGCGTTTTCAAAAGACGCCCAGTGATTGCATTTAGCTCGTGTTACACTA
TTTACAGCAAGTCTACCAGTGGGGAATTAACTGCGCCTATCCGTCCTATC
TTTATCTCTTGTCAGGCGGACCACGAATAGGTCAATATTCGAAAGAAACT
CCATTTGTCAAGCTCATAGTACTACACACTGGTTATTCACAGTTGCATAA
AACTTAACCCTTGTCGGGCGGACCAGGAATACGCGCGGCAAAGCTCGTCC
TGGCTCTCCTCAGACAAGAAAATTTCAATTCCTTTGCAGCTATTTTTCTT
TGGAAATATAAACTCTTGTATTCTGCACCCTCTCAATGGCGATCAAGCAT
TCATCATGGCAAATACGGACAAATCTCGCGCATCACTGCGTCATGCGCTT
GAGTTTCGCAGTTAATTGAGACTCTCGCCACTATCACCAAGTACGACAGA
CGTGTGATTAACCGACGCGATGGCAAGACGGCCGCTCACGTGCTTCGTGA
CTGGGTAGGTTTATGTACTGACACACAGTCAACGCATGGCGGCGCAGAGG
TTGTGCAATGTGCGGCATTTCCTCGCGGAATCGAACAGGTGAGCGGAGGC
TGGATTGATATATACGAGGCAGAACTCACAGCGGAAGGCATTGTGGCTCT
GTTTGCGGAAGTGAAGAAGGGTGACAAACTAACGTTGGTGAAGAATATGG
GTGATGGTGACTGGGCGAATGCGGCGTATATTGGATTGGAACGTGTCGTG
ATGTGCACAGACAGGCGCGCATAG
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Coding sequence (CDS) from alignment at tig00000861_pilon:136337..137360-

>Ggra6392.t1 ID=Ggra6392.t1|Name=Ggra6392.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=441bp|location=Sequence derived from alignment at tig00000861_pilon:136337..137360- (Gracilaria gracilis GNS1m male)
ATGCTCAACCACTCATGTAATGGCAACAAGGGCCATTTGTTTTGCATTTC
ATATATGGCTGTTGCCCTGCGCTCATTGGGCGAATCTGAGACCAATCCCA
AGCTAATCTCAGCTCTCATAAATCCATTTCCGAGTCCTCGCTGGGGGTCT
CCTGAAACTGCCTTAATTGAGACTCTCGCCACTATCACCAAGTACGACAG
ACGTGTGATTAACCGACGCGATGGCAAGACGGCCGCTCACGTGCTTCGTG
ACTGGGTGAGCGGAGGCTGGATTGATATATACGAGGCAGAACTCACAGCG
GAAGGCATTGTGGCTCTGTTTGCGGAAGTGAAGAAGGGTGACAAACTAAC
GTTGGTGAAGAATATGGGTGATGGTGACTGGGCGAATGCGGCGTATATTG
GATTGGAACGTGTCGTGATGTGCACAGACAGGCGCGCATAG
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