Ggra6386.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6386.t1
Unique Name	Ggra6386.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	478

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000861_pilon	contig	tig00000861_pilon:25788..27221 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6386	Ggra6386	Gracilaria gracilis GNS1m male	gene	tig00000861_pilon 25788..27221 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6386.t1.start1	Ggra6386.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000861_pilon 25788..25790 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6386.t1.CDS1	Ggra6386.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000861_pilon 25788..27221 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6386.t1.exon1	Ggra6386.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000861_pilon 25788..27221 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6386.t1.stop1	Ggra6386.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000861_pilon 27219..27221 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6386.t1	Ggra6386.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000861_pilon 25788..27221 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000861_pilon:25788..27221+
coding sequence from alignment at tig00000861_pilon:25788..27221+

mRNA sequence

>Ggra6386.t1 ID=Ggra6386.t1|Name=Ggra6386.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=478bp
MNTLELQDPEVEKAVHLYNSASGDEENPAYSSDGFSDIHLSLEYNSDDCG
DIPWDLDTLAKDDSRTDAVDIVSSGKHLDSSKSSGSESKEHVEASTMRNS
ACVVDPISVNKKVTFADSARKLKLQPEHDRQDGIASSVKGSIERPDSVAI
VSSGKHLNSLKNAASEAQKHIETKTMQNSACISNPSSENKKVTFADSVHE
LKPQSEHDSQVDNANSVEESIDTFRDFFDNFRDNQARGFVTTGPPLPPLK
VAQLSESQTNLFILLARNGNHLLPNKYVKNGIRWASKRDWVLCSIQENGH
PWDLSDPSSVFDCLVHYSKLNCKLTTDKSQNLKNLEFASKQLEVEWRQYE
RTRMLTLQNIGSHFLHSLMSAKDNEYRTIPVRGRHGLLYSNHSCALDSML
FIFPRLFWFIVKSKLHGGGQSGNLNALKAPGAILLYYVMNNLHEIGTGSS
YQQLSHKTISAHLRVLTQDLASYFRNC*

spliced messenger RNA

>Ggra6386.t1 ID=Ggra6386.t1|Name=Ggra6386.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1434bp|location=Sequence derived from alignment at tig00000861_pilon:25788..27221+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATACACTTGAACTCCAAGATCCTGAGGTGGAAAAGGCTGTCCATTT
GTACAACTCCGCATCCGGAGACGAAGAGAATCCTGCTTATTCGAGTGATG
GCTTCAGTGACATACATCTTTCGTTGGAATACAACAGCGATGACTGCGGA
GACATACCATGGGACTTAGATACGCTAGCAAAAGATGATTCTAGGACTGA
TGCCGTTGATATCGTGAGCTCAGGGAAGCATTTGGACTCTTCGAAGAGCT
CTGGGTCTGAATCTAAGGAGCATGTTGAAGCAAGCACGATGAGAAATTCG
GCATGCGTTGTGGATCCCATTTCTGTTAATAAGAAAGTTACATTTGCGGA
CTCAGCCCGTAAGTTGAAACTTCAACCTGAGCATGACAGGCAGGATGGTA
TAGCCAGCTCAGTTAAAGGGTCCATCGAACGGCCTGATTCTGTCGCTATC
GTCAGCTCAGGGAAGCATTTGAACTCTTTGAAGAACGCTGCGTCTGAAGC
TCAGAAGCATATTGAAACAAAGACGATGCAAAATTCGGCATGCATTTCGA
ATCCAAGTTCTGAAAATAAGAAGGTTACATTCGCGGACTCGGTGCATGAA
TTGAAACCTCAATCTGAGCATGATAGTCAGGTAGATAATGCGAATTCTGT
TGAAGAATCCATCGACACTTTCCGCGACTTCTTCGACAATTTTCGTGACA
ATCAAGCGAGAGGATTCGTAACAACTGGGCCCCCTCTTCCCCCTTTGAAA
GTAGCTCAGCTCTCCGAGTCTCAGACTAACCTGTTCATCTTGTTGGCAAG
GAATGGGAACCATCTCCTCCCTAATAAGTATGTGAAAAATGGCATTCGAT
GGGCCTCCAAAAGAGACTGGGTTCTCTGCTCCATACAGGAGAATGGACAT
CCCTGGGATCTTAGTGACCCAAGCTCCGTTTTCGATTGCCTCGTACACTA
TTCGAAATTGAACTGCAAGTTGACAACCGACAAATCACAAAACCTGAAGA
ACTTGGAGTTCGCCTCGAAGCAATTAGAAGTGGAATGGAGACAGTATGAG
AGAACTCGGATGCTAACACTTCAAAACATAGGGAGTCACTTTCTACACAG
TCTGATGTCTGCGAAAGATAACGAGTATAGAACGATTCCGGTTCGAGGCA
GACACGGTTTGCTTTATAGCAATCACTCATGCGCTTTGGACTCAATGCTG
TTTATATTTCCTCGATTGTTTTGGTTTATTGTGAAGTCCAAGCTTCATGG
GGGTGGTCAGTCGGGAAATCTCAATGCTTTAAAAGCACCGGGGGCTATTC
TGTTGTACTATGTGATGAACAATTTGCACGAGATTGGTACAGGCAGTAGT
TATCAACAGCTTTCACACAAGACGATTTCAGCTCATCTTCGCGTCCTAAC
GCAGGACTTAGCGAGCTACTTCAGAAATTGCTAG

protein sequence of Ggra6386.t1

>Ggra6386.t1 ID=Ggra6386.t1|Name=Ggra6386.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=478bp
MNTLELQDPEVEKAVHLYNSASGDEENPAYSSDGFSDIHLSLEYNSDDCG
DIPWDLDTLAKDDSRTDAVDIVSSGKHLDSSKSSGSESKEHVEASTMRNS
ACVVDPISVNKKVTFADSARKLKLQPEHDRQDGIASSVKGSIERPDSVAI
VSSGKHLNSLKNAASEAQKHIETKTMQNSACISNPSSENKKVTFADSVHE
LKPQSEHDSQVDNANSVEESIDTFRDFFDNFRDNQARGFVTTGPPLPPLK
VAQLSESQTNLFILLARNGNHLLPNKYVKNGIRWASKRDWVLCSIQENGH
PWDLSDPSSVFDCLVHYSKLNCKLTTDKSQNLKNLEFASKQLEVEWRQYE
RTRMLTLQNIGSHFLHSLMSAKDNEYRTIPVRGRHGLLYSNHSCALDSML
FIFPRLFWFIVKSKLHGGGQSGNLNALKAPGAILLYYVMNNLHEIGTGSS
YQQLSHKTISAHLRVLTQDLASYFRNC*

mRNA from alignment at tig00000861_pilon:25788..27221+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6386.t1 ID=Ggra6386.t1|Name=Ggra6386.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1434bp|location=Sequence derived from alignment at tig00000861_pilon:25788..27221+ (Gracilaria gracilis GNS1m male)
ATGAATACACTTGAACTCCAAGATCCTGAGGTGGAAAAGGCTGTCCATTT
GTACAACTCCGCATCCGGAGACGAAGAGAATCCTGCTTATTCGAGTGATG
GCTTCAGTGACATACATCTTTCGTTGGAATACAACAGCGATGACTGCGGA
GACATACCATGGGACTTAGATACGCTAGCAAAAGATGATTCTAGGACTGA
TGCCGTTGATATCGTGAGCTCAGGGAAGCATTTGGACTCTTCGAAGAGCT
CTGGGTCTGAATCTAAGGAGCATGTTGAAGCAAGCACGATGAGAAATTCG
GCATGCGTTGTGGATCCCATTTCTGTTAATAAGAAAGTTACATTTGCGGA
CTCAGCCCGTAAGTTGAAACTTCAACCTGAGCATGACAGGCAGGATGGTA
TAGCCAGCTCAGTTAAAGGGTCCATCGAACGGCCTGATTCTGTCGCTATC
GTCAGCTCAGGGAAGCATTTGAACTCTTTGAAGAACGCTGCGTCTGAAGC
TCAGAAGCATATTGAAACAAAGACGATGCAAAATTCGGCATGCATTTCGA
ATCCAAGTTCTGAAAATAAGAAGGTTACATTCGCGGACTCGGTGCATGAA
TTGAAACCTCAATCTGAGCATGATAGTCAGGTAGATAATGCGAATTCTGT
TGAAGAATCCATCGACACTTTCCGCGACTTCTTCGACAATTTTCGTGACA
ATCAAGCGAGAGGATTCGTAACAACTGGGCCCCCTCTTCCCCCTTTGAAA
GTAGCTCAGCTCTCCGAGTCTCAGACTAACCTGTTCATCTTGTTGGCAAG
GAATGGGAACCATCTCCTCCCTAATAAGTATGTGAAAAATGGCATTCGAT
GGGCCTCCAAAAGAGACTGGGTTCTCTGCTCCATACAGGAGAATGGACAT
CCCTGGGATCTTAGTGACCCAAGCTCCGTTTTCGATTGCCTCGTACACTA
TTCGAAATTGAACTGCAAGTTGACAACCGACAAATCACAAAACCTGAAGA
ACTTGGAGTTCGCCTCGAAGCAATTAGAAGTGGAATGGAGACAGTATGAG
AGAACTCGGATGCTAACACTTCAAAACATAGGGAGTCACTTTCTACACAG
TCTGATGTCTGCGAAAGATAACGAGTATAGAACGATTCCGGTTCGAGGCA
GACACGGTTTGCTTTATAGCAATCACTCATGCGCTTTGGACTCAATGCTG
TTTATATTTCCTCGATTGTTTTGGTTTATTGTGAAGTCCAAGCTTCATGG
GGGTGGTCAGTCGGGAAATCTCAATGCTTTAAAAGCACCGGGGGCTATTC
TGTTGTACTATGTGATGAACAATTTGCACGAGATTGGTACAGGCAGTAGT
TATCAACAGCTTTCACACAAGACGATTTCAGCTCATCTTCGCGTCCTAAC
GCAGGACTTAGCGAGCTACTTCAGAAATTGCTAG

Coding sequence (CDS) from alignment at tig00000861_pilon:25788..27221+

>Ggra6386.t1 ID=Ggra6386.t1|Name=Ggra6386.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1434bp|location=Sequence derived from alignment at tig00000861_pilon:25788..27221+ (Gracilaria gracilis GNS1m male)
ATGAATACACTTGAACTCCAAGATCCTGAGGTGGAAAAGGCTGTCCATTT
GTACAACTCCGCATCCGGAGACGAAGAGAATCCTGCTTATTCGAGTGATG
GCTTCAGTGACATACATCTTTCGTTGGAATACAACAGCGATGACTGCGGA
GACATACCATGGGACTTAGATACGCTAGCAAAAGATGATTCTAGGACTGA
TGCCGTTGATATCGTGAGCTCAGGGAAGCATTTGGACTCTTCGAAGAGCT
CTGGGTCTGAATCTAAGGAGCATGTTGAAGCAAGCACGATGAGAAATTCG
GCATGCGTTGTGGATCCCATTTCTGTTAATAAGAAAGTTACATTTGCGGA
CTCAGCCCGTAAGTTGAAACTTCAACCTGAGCATGACAGGCAGGATGGTA
TAGCCAGCTCAGTTAAAGGGTCCATCGAACGGCCTGATTCTGTCGCTATC
GTCAGCTCAGGGAAGCATTTGAACTCTTTGAAGAACGCTGCGTCTGAAGC
TCAGAAGCATATTGAAACAAAGACGATGCAAAATTCGGCATGCATTTCGA
ATCCAAGTTCTGAAAATAAGAAGGTTACATTCGCGGACTCGGTGCATGAA
TTGAAACCTCAATCTGAGCATGATAGTCAGGTAGATAATGCGAATTCTGT
TGAAGAATCCATCGACACTTTCCGCGACTTCTTCGACAATTTTCGTGACA
ATCAAGCGAGAGGATTCGTAACAACTGGGCCCCCTCTTCCCCCTTTGAAA
GTAGCTCAGCTCTCCGAGTCTCAGACTAACCTGTTCATCTTGTTGGCAAG
GAATGGGAACCATCTCCTCCCTAATAAGTATGTGAAAAATGGCATTCGAT
GGGCCTCCAAAAGAGACTGGGTTCTCTGCTCCATACAGGAGAATGGACAT
CCCTGGGATCTTAGTGACCCAAGCTCCGTTTTCGATTGCCTCGTACACTA
TTCGAAATTGAACTGCAAGTTGACAACCGACAAATCACAAAACCTGAAGA
ACTTGGAGTTCGCCTCGAAGCAATTAGAAGTGGAATGGAGACAGTATGAG
AGAACTCGGATGCTAACACTTCAAAACATAGGGAGTCACTTTCTACACAG
TCTGATGTCTGCGAAAGATAACGAGTATAGAACGATTCCGGTTCGAGGCA
GACACGGTTTGCTTTATAGCAATCACTCATGCGCTTTGGACTCAATGCTG
TTTATATTTCCTCGATTGTTTTGGTTTATTGTGAAGTCCAAGCTTCATGG
GGGTGGTCAGTCGGGAAATCTCAATGCTTTAAAAGCACCGGGGGCTATTC
TGTTGTACTATGTGATGAACAATTTGCACGAGATTGGTACAGGCAGTAGT
TATCAACAGCTTTCACACAAGACGATTTCAGCTCATCTTCGCGTCCTAAC
GCAGGACTTAGCGAGCTACTTCAGAAATTGCTAG