Ggra6351.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6351.t1
Unique NameGgra6351.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length325
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000096_piloncontigtig00000096_pilon:324720..328165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5762.XP_002674871.1
Preferred nameCWC27
PFAMsPro_isomerase
Max annot lvl2759|Eukaryota
KEGG koko:K12737
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0031974,GO:0031981,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0071012,GO:0071013,GO:0071704,GO:0140096,GO:1901564,GO:1902494,GO:1990904
Evalue2.38e-10
EggNOG OGsCOG0652@1|root,KOG0865@2759|Eukaryota
EC5.2.1.8
Descriptionpeptidyl-prolyl cis-trans isomerase activity
COG categoryO
BRITEko00000,ko01000,ko03041,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6351Ggra6351Gracilaria gracilis GNS1m malegenetig00000096_pilon 324720..328165 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6351.t1Ggra6351.t1Gracilaria gracilis GNS1m malepolypeptidetig00000096_pilon 324720..328165 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6351.t1.stop1Ggra6351.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000096_pilon 324720..324722 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6351.t1.CDS1Ggra6351.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000096_pilon 324720..325150 -
Ggra6351.t1.CDS2Ggra6351.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000096_pilon 327622..328165 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6351.t1.exon1Ggra6351.t1.exon1Gracilaria gracilis GNS1m maleexontig00000096_pilon 324720..325150 -
Ggra6351.t1.exon2Ggra6351.t1.exon2Gracilaria gracilis GNS1m maleexontig00000096_pilon 327622..328165 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6351.t1.intron1Ggra6351.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000096_pilon 325151..327621 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6351.t1.start1Ggra6351.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000096_pilon 328163..328165 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6351.t1 ID=Ggra6351.t1|Name=Ggra6351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=325bp
MRRATCSTALALAVLSARRRIAPPDAASRAPQHRARRHIARAATSNPPLH
RTRRHIAPPHPPPHPHPPPPAATSTPAATSAPAATSRAPPHRAHRHIRAR
RHIRTRRHIARAATSRAPPHRARRHIARAAASRAPPHRVRRRIARAAAPA
ATSAPAATSAPAATSRAPPHRARRRRIAHHFCGRLWMQLEFPRAKPHTEQ
VFIALYGTLHPATNALAYDDTPVYRAASGLTVQLGDTVRNGGRSERAAMA
EGRLVAEGFRMSHTVPGIVSMVARSGAVDSRFFFYLDGRYVAFGRVQSGL
GALFELERKAERLSRASVWRALAE*
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spliced messenger RNA

>Ggra6351.t1 ID=Ggra6351.t1|Name=Ggra6351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=975bp|location=Sequence derived from alignment at tig00000096_pilon:324720..328165- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCGCGCAACGTGCTCCACTGCACTTGCGCTCGCCGTTCTGAGCGC
CCGCCGCCGAATTGCGCCCCCCGACGCCGCATCGCGCGCGCCGCAACATC
GCGCGCGCCGCCACATCGCGCGCGCCGCCACATCGAACCCGCCGCTGCAT
CGCACCCGCCGCCACATCGCGCCGCCGCACCCGCCGCCACATCCGCACCC
GCCGCCACCCGCCGCCACATCCACACCCGCCGCCACATCCGCACCCGCCG
CCACATCGCGCGCCCCGCCACATCGCGCGCACCGCCACATCCGCGCGCGC
CGCCACATCCGCACACGCCGCCACATCGCGCGCGCCGCCACATCGCGCGC
GCCGCCACATCGCGCGCGCCGCCACATCGCGCGCGCCGCCGCATCGCGCG
CGCCACCGCATCGCGTGCGCCGCCGCATCGCGCGCGCCGCCGCACCCGCC
GCCACATCCGCACCCGCCGCCACATCCGCACCCGCCGCCACATCGCGCGC
GCCGCCACATCGCGCGCGCCGCCGCCGCATCGCGCACCACTTCTGCGGCC
GCCTGTGGATGCAGCTTGAATTCCCGCGCGCCAAGCCGCATACCGAGCAG
GTGTTCATCGCGCTGTACGGCACGCTACACCCCGCAACAAACGCACTCGC
GTACGACGACACGCCGGTGTACCGCGCGGCGTCCGGGCTGACGGTGCAGC
TGGGCGACACGGTACGCAACGGCGGCAGATCAGAGCGCGCCGCGATGGCG
GAAGGCAGGCTAGTGGCAGAGGGGTTCCGCATGTCGCACACGGTGCCAGG
CATCGTGTCGATGGTGGCAAGGAGCGGCGCGGTGGACAGCCGCTTCTTCT
TCTATCTGGATGGAAGGTACGTCGCGTTCGGCCGCGTGCAGAGCGGGCTT
GGCGCGCTGTTCGAGCTGGAGCGCAAGGCGGAGCGGCTGTCGCGCGCGTC
GGTGTGGCGTGCGCTTGCGGAATGA
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protein sequence of Ggra6351.t1

>Ggra6351.t1 ID=Ggra6351.t1|Name=Ggra6351.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=325bp
MRRATCSTALALAVLSARRRIAPPDAASRAPQHRARRHIARAATSNPPLH
RTRRHIAPPHPPPHPHPPPPAATSTPAATSAPAATSRAPPHRAHRHIRAR
RHIRTRRHIARAATSRAPPHRARRHIARAAASRAPPHRVRRRIARAAAPA
ATSAPAATSAPAATSRAPPHRARRRRIAHHFCGRLWMQLEFPRAKPHTEQ
VFIALYGTLHPATNALAYDDTPVYRAASGLTVQLGDTVRNGGRSERAAMA
EGRLVAEGFRMSHTVPGIVSMVARSGAVDSRFFFYLDGRYVAFGRVQSGL
GALFELERKAERLSRASVWRALAE*
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mRNA from alignment at tig00000096_pilon:324720..328165-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6351.t1 ID=Ggra6351.t1|Name=Ggra6351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3446bp|location=Sequence derived from alignment at tig00000096_pilon:324720..328165- (Gracilaria gracilis GNS1m male)
ATGCGCCGCGCAACGTGCTCCACTGCACTTGCGCTCGCCGTTCTGAGCGC
CCGCCGCCGAATTGCGCCCCCCGACGCCGCATCGCGCGCGCCGCAACATC
GCGCGCGCCGCCACATCGCGCGCGCCGCCACATCGAACCCGCCGCTGCAT
CGCACCCGCCGCCACATCGCGCCGCCGCACCCGCCGCCACATCCGCACCC
GCCGCCACCCGCCGCCACATCCACACCCGCCGCCACATCCGCACCCGCCG
CCACATCGCGCGCCCCGCCACATCGCGCGCACCGCCACATCCGCGCGCGC
CGCCACATCCGCACACGCCGCCACATCGCGCGCGCCGCCACATCGCGCGC
GCCGCCACATCGCGCGCGCCGCCACATCGCGCGCGCCGCCGCATCGCGCG
CGCCACCGCATCGCGTGCGCCGCCGCATCGCGCGCGCCGCCGCACCCGCC
GCCACATCCGCACCCGCCGCCACATCCGCACCCGCCGCCACATCGCGCGC
GCCGCCACATCGCGCGCGCCGCCGCCGCATCGCGCACCACTTCTGTACGC
GCTCGCGGCCGCCCCCTCTCACACCGCGCCACTCCGTGCGGCCTATGCCA
TGCTGCGCGGCGAGCGCACCCACCGCGCGTCCATAGCGCGCCATGCCGCG
CGATATCGCGCCATACCGCTCACTTGCGTGCAAGCGCCGCATCCACGACG
TGCCGCACGTCGCCCCGTGCAGAATAGTCGCGCATCTCCACCGCGCGCCA
AAGCGCTGCCGCACCGCGCGCCGTCGGCCTGCGCGCTCGGCTCGCACTCC
CGCCGAACTGCGCCACGCCGCGCCGCACAACGCGCCGCGCACCACGACGA
GCCACGCCGCGCCACGTGGTCGCGCTACACTGGCGCTGCAAAGCGACGTG
CTCTGCCGCGCGCCGCGCACGCTCGCCGCGCGTTCCCACCGCGCGCCAAA
CCGCTGCCGCGCCGCTCATCGGCAGCGTCTGCCGCTCACCCGGATCTCGA
GCCACTTCACCCACGCGCCGCACGTCCACACATCAGACCGCTCGCCAAAT
GGCACCAGCACAGCGCGCCCCTCATCCGCTCAGCTTCACTGCGCGCCGCT
GAAACGCACCGCGCACCTTACTACACGCGCCCGCGCCTGCGCACAAGCAC
GGGCACAGGCCCCGCGTTAGTTTGGAAACACATTAATTGATTACCAATGC
GTACTTTGCCAGCCAGGTTGTACCACAAATTCCGTACGTGAAACCACAAA
TTCCATAGGTCAGTGAATTGCGTGCGGTGCGAAACGATTCAGACCAGCAG
AGGGGAAAAGATTTCTGTTCTGTGAAAACGGTAATTAAGATGTGGAAGCG
GCCATCGCCTGCGTTAGTAGCCCCTGTGAAGCACAAGAGGTCATGGAATT
AGATGGTATTTGTCAGTCTCATGCTTCTGGGCAGAGAATGGTGCATCGAT
GTTGAGTTGCCGGTTCACCCAAAGCCGTTAGCGATAGTGGCCGGAGAATC
GTAGTTGATGCGTCCATGTTGGCCCGTGTCGGCGCCGCGCACCACGTCTC
TGGCGCCGCGCGCGAAGCACGTGCAACAGGCGCCGGGAATTGCTCGCATC
GTACCCTCGTATCGCTTACCCGCGCAGCGCGCACCGCACGCCGGCGCCGT
ACACCTTGTCGACCCACGTTATACTCGCTGCACTCACCTTTTGCTTGCGT
CGCGTACCCCCCACCCGCGTCGCGCGGCTTGCCTAACTTTCTCGCACCGC
GCCCAGCGCGCCTGCACACCGCACCACACGCTTTCAAGGTGCGCCTCCCA
ACCGCGTCGCGCGCTCTTGTTGCTCTACCAGTCTGATGTAAAAGGCAAAT
GACAAGGCGCTGCCAGTGCGGGGTGAACACGACGGCGGTAGAGCTGTAGA
TCAGTGCAGGAAGGAACTTGATCGATGGTCGCAACGCTTTTCGTCGCCGT
TCTGTTATCGATGCAAGTTCGAATTTAAATGCGAGGCTTTTGAACCGTTT
AAGTGAACCAAGTTCAAATTTGAATTGCTGCAAGTCCAACGGATATATTT
TAGATATGCTGAGAAAGACATTAAGCTGTAAGATAGACAAGACCGGATTG
AAGAGATCGCCATATGCAGCTGGCTGTCTGCGCGACAAGGACAGGAAACG
GTCATGTTCTCGTCCTCGAGTATGATAGCCTACCAGTTTCGCGAATATAA
TTTCCAAGTTATTGCTCTCACCGTACTAGAGCAATATCCAAATATTGTGC
ATGGACCTGTAGCTAGAACTAGAATATTGCTTGTGGTCCTGTCCGACAAT
GTAGCGCTATGCGCCAGGCGGGTGCGCGGCGCTTGCCCTCGCTCGCGTTG
GGAGCGTGGATACTTCGCACTCGCTCAGCATCACGCGCACGTCCGCGCGC
CTTGCATCTGCTCCTCTCGCCTACGTGACGCGCTCCACACTCGCTCGACG
CGCCTCAAACTCGCGTCGCGCGCCTCTGTCGTGTTTTGCGAGGCGGCGTG
CGCGGGGTGGCGTGCGCAGGGCGGCGTGCGTGGTGCGGCGTGCACGGGGC
GGCGTGCGCGGTGCGGCGTGCGCGGGGCGGCGTGCACGGGGCGGCGTGCG
CGGTGCGGCGCGCGCGGGGCGGCGTGCGCGGTGCGGCGCGCGCGGGGCGG
CGTGCGCAGGGCGGCGTGCGCGGTGCGGCGTGCGCGGGGCGGCGTGCGCG
GGGCGGCGTGCGCGGTGCGGCGTGCGCGGGGCGGCGTTCCGAACGGGTGT
GGCGTGCTGGCGTGCAGTTTGTGCTGCTCGAGGTGCGAGTGCGTGTGCAC
ACGCTCGTGGCGCGAACGCTCGCGCGCACTTCACCAGCAAAGGCGCACGC
GAAAAGGATGCGTGCGCGTGAGTTACAGCGCGCGTGTTAGTTAGAGCGTG
CGTTGGCGCCGCGTCCACAGCGAAAAGGACCTTCGGTACCGTGCTCACAG
CACAATGTACGCGCAAGTCGTCACCACGCCGCTGCAGCGAAAACTGCGTC
TATGATCTGCGTCAGGCGGCCGCCTGTGGATGCAGCTTGAATTCCCGCGC
GCCAAGCCGCATACCGAGCAGGTGTTCATCGCGCTGTACGGCACGCTACA
CCCCGCAACAAACGCACTCGCGTACGACGACACGCCGGTGTACCGCGCGG
CGTCCGGGCTGACGGTGCAGCTGGGCGACACGGTACGCAACGGCGGCAGA
TCAGAGCGCGCCGCGATGGCGGAAGGCAGGCTAGTGGCAGAGGGGTTCCG
CATGTCGCACACGGTGCCAGGCATCGTGTCGATGGTGGCAAGGAGCGGCG
CGGTGGACAGCCGCTTCTTCTTCTATCTGGATGGAAGGTACGTCGCGTTC
GGCCGCGTGCAGAGCGGGCTTGGCGCGCTGTTCGAGCTGGAGCGCAAGGC
GGAGCGGCTGTCGCGCGCGTCGGTGTGGCGTGCGCTTGCGGAATGA
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Coding sequence (CDS) from alignment at tig00000096_pilon:324720..328165-

>Ggra6351.t1 ID=Ggra6351.t1|Name=Ggra6351.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=975bp|location=Sequence derived from alignment at tig00000096_pilon:324720..328165- (Gracilaria gracilis GNS1m male)
ATGCGCCGCGCAACGTGCTCCACTGCACTTGCGCTCGCCGTTCTGAGCGC
CCGCCGCCGAATTGCGCCCCCCGACGCCGCATCGCGCGCGCCGCAACATC
GCGCGCGCCGCCACATCGCGCGCGCCGCCACATCGAACCCGCCGCTGCAT
CGCACCCGCCGCCACATCGCGCCGCCGCACCCGCCGCCACATCCGCACCC
GCCGCCACCCGCCGCCACATCCACACCCGCCGCCACATCCGCACCCGCCG
CCACATCGCGCGCCCCGCCACATCGCGCGCACCGCCACATCCGCGCGCGC
CGCCACATCCGCACACGCCGCCACATCGCGCGCGCCGCCACATCGCGCGC
GCCGCCACATCGCGCGCGCCGCCACATCGCGCGCGCCGCCGCATCGCGCG
CGCCACCGCATCGCGTGCGCCGCCGCATCGCGCGCGCCGCCGCACCCGCC
GCCACATCCGCACCCGCCGCCACATCCGCACCCGCCGCCACATCGCGCGC
GCCGCCACATCGCGCGCGCCGCCGCCGCATCGCGCACCACTTCTGCGGCC
GCCTGTGGATGCAGCTTGAATTCCCGCGCGCCAAGCCGCATACCGAGCAG
GTGTTCATCGCGCTGTACGGCACGCTACACCCCGCAACAAACGCACTCGC
GTACGACGACACGCCGGTGTACCGCGCGGCGTCCGGGCTGACGGTGCAGC
TGGGCGACACGGTACGCAACGGCGGCAGATCAGAGCGCGCCGCGATGGCG
GAAGGCAGGCTAGTGGCAGAGGGGTTCCGCATGTCGCACACGGTGCCAGG
CATCGTGTCGATGGTGGCAAGGAGCGGCGCGGTGGACAGCCGCTTCTTCT
TCTATCTGGATGGAAGGTACGTCGCGTTCGGCCGCGTGCAGAGCGGGCTT
GGCGCGCTGTTCGAGCTGGAGCGCAAGGCGGAGCGGCTGTCGCGCGCGTC
GGTGTGGCGTGCGCTTGCGGAATGA
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