Ggra6350.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6350.t1
Unique NameGgra6350.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length374
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000096_piloncontigtig00000096_pilon:321017..322246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6350Ggra6350Gracilaria gracilis GNS1m malegenetig00000096_pilon 321017..322246 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6350.t1Ggra6350.t1Gracilaria gracilis GNS1m malepolypeptidetig00000096_pilon 321017..322246 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6350.t1.stop1Ggra6350.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000096_pilon 321017..321019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6350.t1.CDS1Ggra6350.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000096_pilon 321017..322067 -
Ggra6350.t1.CDS2Ggra6350.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000096_pilon 322176..322246 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6350.t1.exon1Ggra6350.t1.exon1Gracilaria gracilis GNS1m maleexontig00000096_pilon 321017..322067 -
Ggra6350.t1.exon2Ggra6350.t1.exon2Gracilaria gracilis GNS1m maleexontig00000096_pilon 322176..322246 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6350.t1.intron1Ggra6350.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000096_pilon 322068..322175 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6350.t1.start1Ggra6350.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000096_pilon 322244..322246 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6350.t1 ID=Ggra6350.t1|Name=Ggra6350.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=374bp
MSAHDGTIYKGVLHRYDQNIDQHLLITSSGSLWVSLRDVPLTFRAVVRDK
PESMLKGINGNTQNPVTRDKRTDITPVVPSPPSPQVAAIAQSRTISMQLR
TIATTQPSSSPSNAIDDCNRHPLQAPTRTIAPMLPSPSPPMTFSQPNAPA
EGQNRTSSSFPPQTALPIIAEFTKLSSTQPKRLSTALPSPSPQPQAERST
VHVMPSSSPPPSNGPTIASPHLSSPPQVQPPGTAVLPSSQPSPLWMGKDA
NKEIHSSLVPGSPSRLASHARPVTPHPAAGSRLKRRRNTAKAQTQSLKPL
SPVSTKVCSPAPLSKDRPFPTTLGNLSEAQNRAINSLSHGGAHAVSPLAP
IGRPTNTLNGEEMEELLLDNMEQ*
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spliced messenger RNA

>Ggra6350.t1 ID=Ggra6350.t1|Name=Ggra6350.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1122bp|location=Sequence derived from alignment at tig00000096_pilon:321017..322246- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCGCATGATGGCACCATCTACAAAGGAGTTCTTCATCGATATGA
CCAAAACATTGATCAGCACTTGCTGATAACCAGTTCCGGGAGTTTGTGGG
TATCACTACGCGACGTCCCTCTAACGTTTCGGGCTGTGGTCCGTGACAAG
CCAGAATCAATGCTTAAAGGAATCAACGGAAACACTCAAAATCCTGTAAC
CAGAGATAAGCGCACCGACATCACCCCAGTTGTCCCCTCACCGCCATCGC
CTCAGGTAGCAGCCATAGCTCAATCCCGAACAATTTCGATGCAGCTCCGG
ACCATCGCTACAACCCAGCCATCTTCGTCGCCGTCAAATGCAATAGATGA
TTGCAATAGACATCCGTTGCAGGCTCCAACCAGGACAATCGCTCCAATGC
TTCCGTCGCCATCACCGCCGATGACTTTTTCACAACCCAATGCCCCTGCC
GAAGGTCAAAACCGAACGTCTTCCTCATTTCCACCACAAACAGCACTTCC
GATTATCGCTGAGTTCACGAAATTGTCATCAACGCAGCCAAAGCGTCTTT
CCACGGCCTTACCGTCTCCATCACCACAACCGCAAGCCGAGCGTTCGACT
GTCCATGTCATGCCTTCGTCGTCGCCACCGCCATCAAACGGTCCAACCAT
CGCGTCTCCGCATCTATCCTCCCCACCGCAGGTACAGCCTCCGGGGACCG
CTGTCTTACCTTCTTCGCAGCCATCGCCGCTATGGATGGGAAAGGATGCC
AACAAAGAGATACACTCGTCGTTGGTCCCAGGGTCCCCGTCTCGTCTTGC
ATCTCATGCGCGCCCAGTGACTCCTCACCCGGCTGCGGGCAGCAGACTAA
AGCGGCGAAGAAATACCGCCAAAGCACAAACACAATCTCTGAAACCGCTG
TCGCCGGTTTCGACGAAAGTGTGCTCCCCCGCTCCTCTGTCGAAAGACAG
ACCCTTTCCAACCACATTGGGAAACCTCTCTGAGGCTCAAAATAGAGCTA
TTAATAGCCTTTCACATGGCGGCGCGCACGCTGTGTCGCCCCTGGCGCCC
ATCGGCAGGCCAACAAACACGTTGAATGGAGAAGAAATGGAAGAGCTCCT
CCTTGACAACATGGAGCAGTGA
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protein sequence of Ggra6350.t1

>Ggra6350.t1 ID=Ggra6350.t1|Name=Ggra6350.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=374bp
MSAHDGTIYKGVLHRYDQNIDQHLLITSSGSLWVSLRDVPLTFRAVVRDK
PESMLKGINGNTQNPVTRDKRTDITPVVPSPPSPQVAAIAQSRTISMQLR
TIATTQPSSSPSNAIDDCNRHPLQAPTRTIAPMLPSPSPPMTFSQPNAPA
EGQNRTSSSFPPQTALPIIAEFTKLSSTQPKRLSTALPSPSPQPQAERST
VHVMPSSSPPPSNGPTIASPHLSSPPQVQPPGTAVLPSSQPSPLWMGKDA
NKEIHSSLVPGSPSRLASHARPVTPHPAAGSRLKRRRNTAKAQTQSLKPL
SPVSTKVCSPAPLSKDRPFPTTLGNLSEAQNRAINSLSHGGAHAVSPLAP
IGRPTNTLNGEEMEELLLDNMEQ*
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mRNA from alignment at tig00000096_pilon:321017..322246-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6350.t1 ID=Ggra6350.t1|Name=Ggra6350.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1230bp|location=Sequence derived from alignment at tig00000096_pilon:321017..322246- (Gracilaria gracilis GNS1m male)
ATGTCCGCGCATGATGGCACCATCTACAAAGGAGTTCTTCATCGATATGA
CCAAAACATTGATCAGCACTTGTAAGTTGCCATTTTACTGTCTCAACTAT
GACTTTGGCCCTGAACGCTGAGAGCCAGCACGTTTACTGATGCATTACAT
TACGGCTGTTTGTAACCTTCGTGTGCTAGGCTGATAACCAGTTCCGGGAG
TTTGTGGGTATCACTACGCGACGTCCCTCTAACGTTTCGGGCTGTGGTCC
GTGACAAGCCAGAATCAATGCTTAAAGGAATCAACGGAAACACTCAAAAT
CCTGTAACCAGAGATAAGCGCACCGACATCACCCCAGTTGTCCCCTCACC
GCCATCGCCTCAGGTAGCAGCCATAGCTCAATCCCGAACAATTTCGATGC
AGCTCCGGACCATCGCTACAACCCAGCCATCTTCGTCGCCGTCAAATGCA
ATAGATGATTGCAATAGACATCCGTTGCAGGCTCCAACCAGGACAATCGC
TCCAATGCTTCCGTCGCCATCACCGCCGATGACTTTTTCACAACCCAATG
CCCCTGCCGAAGGTCAAAACCGAACGTCTTCCTCATTTCCACCACAAACA
GCACTTCCGATTATCGCTGAGTTCACGAAATTGTCATCAACGCAGCCAAA
GCGTCTTTCCACGGCCTTACCGTCTCCATCACCACAACCGCAAGCCGAGC
GTTCGACTGTCCATGTCATGCCTTCGTCGTCGCCACCGCCATCAAACGGT
CCAACCATCGCGTCTCCGCATCTATCCTCCCCACCGCAGGTACAGCCTCC
GGGGACCGCTGTCTTACCTTCTTCGCAGCCATCGCCGCTATGGATGGGAA
AGGATGCCAACAAAGAGATACACTCGTCGTTGGTCCCAGGGTCCCCGTCT
CGTCTTGCATCTCATGCGCGCCCAGTGACTCCTCACCCGGCTGCGGGCAG
CAGACTAAAGCGGCGAAGAAATACCGCCAAAGCACAAACACAATCTCTGA
AACCGCTGTCGCCGGTTTCGACGAAAGTGTGCTCCCCCGCTCCTCTGTCG
AAAGACAGACCCTTTCCAACCACATTGGGAAACCTCTCTGAGGCTCAAAA
TAGAGCTATTAATAGCCTTTCACATGGCGGCGCGCACGCTGTGTCGCCCC
TGGCGCCCATCGGCAGGCCAACAAACACGTTGAATGGAGAAGAAATGGAA
GAGCTCCTCCTTGACAACATGGAGCAGTGA
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Coding sequence (CDS) from alignment at tig00000096_pilon:321017..322246-

>Ggra6350.t1 ID=Ggra6350.t1|Name=Ggra6350.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1122bp|location=Sequence derived from alignment at tig00000096_pilon:321017..322246- (Gracilaria gracilis GNS1m male)
ATGTCCGCGCATGATGGCACCATCTACAAAGGAGTTCTTCATCGATATGA
CCAAAACATTGATCAGCACTTGCTGATAACCAGTTCCGGGAGTTTGTGGG
TATCACTACGCGACGTCCCTCTAACGTTTCGGGCTGTGGTCCGTGACAAG
CCAGAATCAATGCTTAAAGGAATCAACGGAAACACTCAAAATCCTGTAAC
CAGAGATAAGCGCACCGACATCACCCCAGTTGTCCCCTCACCGCCATCGC
CTCAGGTAGCAGCCATAGCTCAATCCCGAACAATTTCGATGCAGCTCCGG
ACCATCGCTACAACCCAGCCATCTTCGTCGCCGTCAAATGCAATAGATGA
TTGCAATAGACATCCGTTGCAGGCTCCAACCAGGACAATCGCTCCAATGC
TTCCGTCGCCATCACCGCCGATGACTTTTTCACAACCCAATGCCCCTGCC
GAAGGTCAAAACCGAACGTCTTCCTCATTTCCACCACAAACAGCACTTCC
GATTATCGCTGAGTTCACGAAATTGTCATCAACGCAGCCAAAGCGTCTTT
CCACGGCCTTACCGTCTCCATCACCACAACCGCAAGCCGAGCGTTCGACT
GTCCATGTCATGCCTTCGTCGTCGCCACCGCCATCAAACGGTCCAACCAT
CGCGTCTCCGCATCTATCCTCCCCACCGCAGGTACAGCCTCCGGGGACCG
CTGTCTTACCTTCTTCGCAGCCATCGCCGCTATGGATGGGAAAGGATGCC
AACAAAGAGATACACTCGTCGTTGGTCCCAGGGTCCCCGTCTCGTCTTGC
ATCTCATGCGCGCCCAGTGACTCCTCACCCGGCTGCGGGCAGCAGACTAA
AGCGGCGAAGAAATACCGCCAAAGCACAAACACAATCTCTGAAACCGCTG
TCGCCGGTTTCGACGAAAGTGTGCTCCCCCGCTCCTCTGTCGAAAGACAG
ACCCTTTCCAACCACATTGGGAAACCTCTCTGAGGCTCAAAATAGAGCTA
TTAATAGCCTTTCACATGGCGGCGCGCACGCTGTGTCGCCCCTGGCGCCC
ATCGGCAGGCCAACAAACACGTTGAATGGAGAAGAAATGGAAGAGCTCCT
CCTTGACAACATGGAGCAGTGA
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