Ggra6348.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6348.t1
Unique NameGgra6348.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length103
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000096_piloncontigtig00000096_pilon:292290..292598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42254.XP_004606342.1
Preferred nameSPATA5
PFAMsAAA
Max annot lvl33208|Metazoa
KEGG koko:K13525,ko:K14575
KEGG TC3.A.16.1
KEGG Pathwayko03008,ko04141,ko05134,map03008,map04141,map05134
KEGG ModuleM00400,M00403
GOsGO:0001655,GO:0001657,GO:0001658,GO:0001763,GO:0001822,GO:0001823,GO:0001932,GO:0001933,GO:0002009,GO:0003674,GO:0003824,GO:0004857,GO:0004860,GO:0005102,GO:0005178,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006469,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0009653,GO:0009887,GO:0009888,GO:0009892,GO:0010563,GO:0010594,GO:0010595,GO:0010605,GO:0010632,GO:0010634,GO:0010941,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0022603,GO:0030234,GO:0030334,GO:0030335,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032879,GO:0033673,GO:0035239,GO:0035295,GO:0040012,GO:0040017,GO:0042325,GO:0042326,GO:0043086,GO:0043535,GO:0043536,GO:0043549,GO:0044092,GO:0044424,GO:0044464,GO:0044877,GO:0045765,GO:0045766,GO:0045859,GO:0045936,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050839,GO:0051094,GO:0051171,GO:0051172,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051270,GO:0051272,GO:0051338,GO:0051348,GO:0060255,GO:0060322,GO:0060429,GO:0060548,GO:0060562,GO:0060675,GO:0060993,GO:0061138,GO:0061326,GO:0061333,GO:0065007,GO:0065009,GO:0072001,GO:0072006,GO:0072009,GO:0072028,GO:0072073,GO:0072078,GO:0072080,GO:0072088,GO:0072163,GO:0072164,GO:0072171,GO:0080090,GO:0090049,GO:0090050,GO:0098772,GO:1901342,GO:1903670,GO:1903672,GO:1904018,GO:2000026,GO:2000145,GO:2000147
Evalue1.43e-08
EggNOG OGsCOG0464@1|root,KOG0730@2759|Eukaryota,38CYE@33154|Opisthokonta,3BB5Y@33208|Metazoa,3CUQX@33213|Bilateria,47ZCE@7711|Chordata,494BQ@7742|Vertebrata,3JBMD@40674|Mammalia
Descriptioncarbohydrate derivative binding
COG categoryO
BRITEko00000,ko00001,ko00002,ko03009,ko03019,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6348Ggra6348Gracilaria gracilis GNS1m malegenetig00000096_pilon 292290..292598 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6348.t1.stop1Ggra6348.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000096_pilon 292290..292292 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6348.t1.CDS1Ggra6348.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000096_pilon 292290..292598 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6348.t1.exon1Ggra6348.t1.exon1Gracilaria gracilis GNS1m maleexontig00000096_pilon 292290..292598 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6348.t1.start1Ggra6348.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000096_pilon 292596..292598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6348.t1Ggra6348.t1Gracilaria gracilis GNS1m malepolypeptidetig00000096_pilon 292290..292598 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6348.t1 ID=Ggra6348.t1|Name=Ggra6348.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=103bp
MVRPGRIDNTIKLELPEMENRRCILDMVLKYIVVSCEDRDRPLTESLVDD
TEGMTGAQLVLLCDEAGMIDIEEEETKTECVREKHFREAMEQYARMKATS
TS*
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spliced messenger RNA

>Ggra6348.t1 ID=Ggra6348.t1|Name=Ggra6348.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=309bp|location=Sequence derived from alignment at tig00000096_pilon:292290..292598- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCGTCCGGGGCGAATTGACAACACCATCAAGCTGGAGTTGCCTGA
AATGGAAAACCGCAGATGCATTCTAGATATGGTTCTTAAGTACATCGTCG
TCTCCTGTGAAGACAGAGACAGACCATTAACTGAAAGCTTAGTTGATGAC
ACGGAAGGAATGACTGGCGCTCAACTAGTTTTGCTCTGCGATGAAGCAGG
GATGATTGACATCGAGGAAGAAGAAACAAAAACGGAGTGCGTACGTGAGA
AACATTTTCGAGAGGCCATGGAGCAATACGCTCGAATGAAGGCGACTTCG
ACAAGTTAG
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protein sequence of Ggra6348.t1

>Ggra6348.t1 ID=Ggra6348.t1|Name=Ggra6348.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=103bp
MVRPGRIDNTIKLELPEMENRRCILDMVLKYIVVSCEDRDRPLTESLVDD
TEGMTGAQLVLLCDEAGMIDIEEEETKTECVREKHFREAMEQYARMKATS
TS*
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mRNA from alignment at tig00000096_pilon:292290..292598-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6348.t1 ID=Ggra6348.t1|Name=Ggra6348.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=309bp|location=Sequence derived from alignment at tig00000096_pilon:292290..292598- (Gracilaria gracilis GNS1m male)
ATGGTGCGTCCGGGGCGAATTGACAACACCATCAAGCTGGAGTTGCCTGA
AATGGAAAACCGCAGATGCATTCTAGATATGGTTCTTAAGTACATCGTCG
TCTCCTGTGAAGACAGAGACAGACCATTAACTGAAAGCTTAGTTGATGAC
ACGGAAGGAATGACTGGCGCTCAACTAGTTTTGCTCTGCGATGAAGCAGG
GATGATTGACATCGAGGAAGAAGAAACAAAAACGGAGTGCGTACGTGAGA
AACATTTTCGAGAGGCCATGGAGCAATACGCTCGAATGAAGGCGACTTCG
ACAAGTTAG
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Coding sequence (CDS) from alignment at tig00000096_pilon:292290..292598-

>Ggra6348.t1 ID=Ggra6348.t1|Name=Ggra6348.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=309bp|location=Sequence derived from alignment at tig00000096_pilon:292290..292598- (Gracilaria gracilis GNS1m male)
ATGGTGCGTCCGGGGCGAATTGACAACACCATCAAGCTGGAGTTGCCTGA
AATGGAAAACCGCAGATGCATTCTAGATATGGTTCTTAAGTACATCGTCG
TCTCCTGTGAAGACAGAGACAGACCATTAACTGAAAGCTTAGTTGATGAC
ACGGAAGGAATGACTGGCGCTCAACTAGTTTTGCTCTGCGATGAAGCAGG
GATGATTGACATCGAGGAAGAAGAAACAAAAACGGAGTGCGTACGTGAGA
AACATTTTCGAGAGGCCATGGAGCAATACGCTCGAATGAAGGCGACTTCG
ACAAGTTAG
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