Ggra6343.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6343.t1
Unique NameGgra6343.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length261
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000096_piloncontigtig00000096_pilon:282793..283688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6669.EFX63536
PFAMsMethyltransf_21
Max annot lvl33208|Metazoa
Evalue9.65e-07
EggNOG OGs2CABX@1|root,2S7ZD@2759|Eukaryota,39MTG@33154|Opisthokonta,3CPD8@33208|Metazoa,3E5HU@33213|Bilateria,42AIZ@6656|Arthropoda
DescriptionMethyltransferase FkbM domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6343Ggra6343Gracilaria gracilis GNS1m malegenetig00000096_pilon 282793..283688 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6343.t1Ggra6343.t1Gracilaria gracilis GNS1m malepolypeptidetig00000096_pilon 282793..283688 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6343.t1.start1Ggra6343.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000096_pilon 282793..282795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6343.t1.CDS1Ggra6343.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000096_pilon 282793..282912 +
Ggra6343.t1.CDS2Ggra6343.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000096_pilon 283026..283688 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6343.t1.exon1Ggra6343.t1.exon1Gracilaria gracilis GNS1m maleexontig00000096_pilon 282793..282912 +
Ggra6343.t1.exon2Ggra6343.t1.exon2Gracilaria gracilis GNS1m maleexontig00000096_pilon 283026..283688 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6343.t1.intron1Ggra6343.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000096_pilon 282913..283025 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6343.t1.stop1Ggra6343.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000096_pilon 283686..283688 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6343.t1 ID=Ggra6343.t1|Name=Ggra6343.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=261bp
MTETTRASTAEERSGAAGGRTLPCSHTFVAGFIVTLLTFPDHSFLVRLAS
TSYLSPPLAIASCDQDDAETGFHLLHCRTLAVLASSCSPKIALLAQQAGI
IEETYNHAKDFEKKDIDVPVINARCTTMKNVLERNAITVVDYLSLDVEGH
ELEVLKGFDWENVVVNLMTIELSSKCEQEIEDFLIPKGCKRFLFKYNGRG
DSRTFMVEDAVFLHESTSKSQPLVVVLRTIESRGCHACMRGAIGRCSKVA
ALLRAARLVG*
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spliced messenger RNA

>Ggra6343.t1 ID=Ggra6343.t1|Name=Ggra6343.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=783bp|location=Sequence derived from alignment at tig00000096_pilon:282793..283688+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGAGACGACGCGTGCATCAACCGCTGAAGAACGCAGCGGAGCGGC
TGGTGGACGCACGCTGCCGTGTTCACACACTTTCGTCGCCGGATTCATCG
TCACTCTTCTTACCTTCCCGGATCACAGCTTCCTGGTACGGCTCGCGAGC
ACTTCGTATCTGAGTCCGCCCCTTGCAATAGCCAGTTGTGACCAGGATGA
TGCCGAAACGGGGTTTCACTTGCTTCACTGCCGTACGCTGGCCGTGCTTG
CTTCCTCTTGCTCTCCGAAAATTGCTCTTCTCGCGCAGCAAGCGGGTATC
ATCGAAGAAACTTACAATCACGCAAAGGACTTCGAGAAGAAGGATATCGA
CGTACCTGTGATTAATGCACGTTGCACGACGATGAAGAATGTGCTAGAGA
GAAATGCAATAACTGTGGTGGACTATCTCAGTCTGGACGTTGAGGGACAT
GAACTAGAAGTTCTGAAGGGCTTCGACTGGGAAAACGTAGTGGTGAATCT
GATGACCATTGAGCTTTCATCCAAGTGTGAGCAGGAGATCGAGGATTTTC
TGATACCGAAAGGGTGCAAGAGATTTTTGTTTAAGTACAATGGAAGAGGT
GACTCTAGAACGTTCATGGTAGAGGATGCTGTGTTCTTGCATGAATCGAC
GAGCAAATCGCAGCCGCTTGTTGTTGTATTGAGAACTATTGAGAGCCGCG
GTTGCCATGCTTGTATGCGTGGAGCTATCGGACGTTGCTCAAAAGTGGCC
GCGCTTCTCCGAGCTGCTCGATTAGTCGGCTAG
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protein sequence of Ggra6343.t1

>Ggra6343.t1 ID=Ggra6343.t1|Name=Ggra6343.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=261bp
MTETTRASTAEERSGAAGGRTLPCSHTFVAGFIVTLLTFPDHSFLVRLAS
TSYLSPPLAIASCDQDDAETGFHLLHCRTLAVLASSCSPKIALLAQQAGI
IEETYNHAKDFEKKDIDVPVINARCTTMKNVLERNAITVVDYLSLDVEGH
ELEVLKGFDWENVVVNLMTIELSSKCEQEIEDFLIPKGCKRFLFKYNGRG
DSRTFMVEDAVFLHESTSKSQPLVVVLRTIESRGCHACMRGAIGRCSKVA
ALLRAARLVG*
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mRNA from alignment at tig00000096_pilon:282793..283688+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6343.t1 ID=Ggra6343.t1|Name=Ggra6343.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=896bp|location=Sequence derived from alignment at tig00000096_pilon:282793..283688+ (Gracilaria gracilis GNS1m male)
ATGACTGAGACGACGCGTGCATCAACCGCTGAAGAACGCAGCGGAGCGGC
TGGTGGACGCACGCTGCCGTGTTCACACACTTTCGTCGCCGGATTCATCG
TCACTCTTCTTACCTTCCCGGTCCGGAGCACACGCAAGCCACGACAGAGC
AGCAGGATTCGTAGCGCAATACCAACTGCAATGGGAACACGTGAGCACAC
CCGATCTGCTTCTTCCATCCTACATTCTCACAGGATCACAGCTTCCTGGT
ACGGCTCGCGAGCACTTCGTATCTGAGTCCGCCCCTTGCAATAGCCAGTT
GTGACCAGGATGATGCCGAAACGGGGTTTCACTTGCTTCACTGCCGTACG
CTGGCCGTGCTTGCTTCCTCTTGCTCTCCGAAAATTGCTCTTCTCGCGCA
GCAAGCGGGTATCATCGAAGAAACTTACAATCACGCAAAGGACTTCGAGA
AGAAGGATATCGACGTACCTGTGATTAATGCACGTTGCACGACGATGAAG
AATGTGCTAGAGAGAAATGCAATAACTGTGGTGGACTATCTCAGTCTGGA
CGTTGAGGGACATGAACTAGAAGTTCTGAAGGGCTTCGACTGGGAAAACG
TAGTGGTGAATCTGATGACCATTGAGCTTTCATCCAAGTGTGAGCAGGAG
ATCGAGGATTTTCTGATACCGAAAGGGTGCAAGAGATTTTTGTTTAAGTA
CAATGGAAGAGGTGACTCTAGAACGTTCATGGTAGAGGATGCTGTGTTCT
TGCATGAATCGACGAGCAAATCGCAGCCGCTTGTTGTTGTATTGAGAACT
ATTGAGAGCCGCGGTTGCCATGCTTGTATGCGTGGAGCTATCGGACGTTG
CTCAAAAGTGGCCGCGCTTCTCCGAGCTGCTCGATTAGTCGGCTAG
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Coding sequence (CDS) from alignment at tig00000096_pilon:282793..283688+

>Ggra6343.t1 ID=Ggra6343.t1|Name=Ggra6343.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=783bp|location=Sequence derived from alignment at tig00000096_pilon:282793..283688+ (Gracilaria gracilis GNS1m male)
ATGACTGAGACGACGCGTGCATCAACCGCTGAAGAACGCAGCGGAGCGGC
TGGTGGACGCACGCTGCCGTGTTCACACACTTTCGTCGCCGGATTCATCG
TCACTCTTCTTACCTTCCCGGATCACAGCTTCCTGGTACGGCTCGCGAGC
ACTTCGTATCTGAGTCCGCCCCTTGCAATAGCCAGTTGTGACCAGGATGA
TGCCGAAACGGGGTTTCACTTGCTTCACTGCCGTACGCTGGCCGTGCTTG
CTTCCTCTTGCTCTCCGAAAATTGCTCTTCTCGCGCAGCAAGCGGGTATC
ATCGAAGAAACTTACAATCACGCAAAGGACTTCGAGAAGAAGGATATCGA
CGTACCTGTGATTAATGCACGTTGCACGACGATGAAGAATGTGCTAGAGA
GAAATGCAATAACTGTGGTGGACTATCTCAGTCTGGACGTTGAGGGACAT
GAACTAGAAGTTCTGAAGGGCTTCGACTGGGAAAACGTAGTGGTGAATCT
GATGACCATTGAGCTTTCATCCAAGTGTGAGCAGGAGATCGAGGATTTTC
TGATACCGAAAGGGTGCAAGAGATTTTTGTTTAAGTACAATGGAAGAGGT
GACTCTAGAACGTTCATGGTAGAGGATGCTGTGTTCTTGCATGAATCGAC
GAGCAAATCGCAGCCGCTTGTTGTTGTATTGAGAACTATTGAGAGCCGCG
GTTGCCATGCTTGTATGCGTGGAGCTATCGGACGTTGCTCAAAAGTGGCC
GCGCTTCTCCGAGCTGCTCGATTAGTCGGCTAG
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