Ggra6339.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6339.t1
Unique NameGgra6339.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length350
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000096_piloncontigtig00000096_pilon:256647..257696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G2K8
PFAMsHIRAN,Helicase_C,SNF2_N,UBA_4,zf-C3HC4_3,zf-RING_5
Max annot lvl2759|Eukaryota
KEGG koko:K15710,ko:K15711
Evalue0.000138
EggNOG OGsCOG0141@1|root,COG0553@1|root,KOG1001@2759|Eukaryota,KOG1002@2759|Eukaryota
EC2.3.2.27
Descriptionpyrimidine dimer repair by nucleotide-excision repair
COG categoryE
BRITEko00000,ko01000,ko03400,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6339Ggra6339Gracilaria gracilis GNS1m malegenetig00000096_pilon 256647..257696 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6339.t1.start1Ggra6339.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000096_pilon 256647..256649 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6339.t1.CDS1Ggra6339.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000096_pilon 256647..257696 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6339.t1.exon1Ggra6339.t1.exon1Gracilaria gracilis GNS1m maleexontig00000096_pilon 256647..257696 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6339.t1.stop1Ggra6339.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000096_pilon 257694..257696 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6339.t1Ggra6339.t1Gracilaria gracilis GNS1m malepolypeptidetig00000096_pilon 256647..257696 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6339.t1 ID=Ggra6339.t1|Name=Ggra6339.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=350bp
MHIGMSYNRRKTLLFEQRQWLCKRRSVVQKLDHLDCSNCCRLRLAVYLTP
KAFGSVSVNAAEFCAKSSPYSIMTPVDGGPPLQNPNAKQLAKHRLSRTMT
LPTDSFALHDIFSILQPQLDGTQAWSAVASAAAGSVLDAKLHGSDSNTFR
SLLLTHRGGDIELHKRSQEILDDLKQICEELNHDTSANSIHQASLRSSLF
TVSTGYQRAEQQPGNVKLQLRPYQLESLAWMIDREKERSVSDPFGIRIRA
KDRCDAERILHYCPLTGALSAVPPPPVVGGVLCGGVTLYSLNVNGMERLL
RSDGTTSGVMALASFLTLSSAPSSGSKASCGQEASQKVIFKTDVKCRDC*
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spliced messenger RNA

>Ggra6339.t1 ID=Ggra6339.t1|Name=Ggra6339.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1050bp|location=Sequence derived from alignment at tig00000096_pilon:256647..257696+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACATTGGCATGTCTTACAATAGGAGGAAAACGCTTCTCTTCGAGCA
GCGCCAATGGCTGTGCAAACGACGCAGTGTTGTACAGAAGCTCGACCATC
TTGATTGTTCCAATTGCTGTCGATTGCGTCTCGCCGTCTATCTAACTCCC
AAGGCATTCGGCTCTGTGTCGGTCAACGCTGCCGAGTTTTGTGCCAAAAG
CTCGCCGTACTCTATCATGACCCCTGTTGATGGTGGACCTCCGCTCCAAA
ATCCAAACGCAAAACAACTCGCGAAGCATCGGCTCTCACGCACAATGACA
TTACCGACGGACAGCTTCGCTCTGCACGACATTTTTTCCATTCTGCAGCC
TCAGCTTGACGGAACACAAGCATGGTCCGCCGTAGCAAGCGCCGCCGCCG
GATCGGTACTGGACGCCAAGCTGCACGGCAGCGATTCCAACACCTTCAGA
TCTCTCTTGTTAACGCACCGAGGCGGTGACATCGAACTCCACAAGCGCAG
CCAGGAGATTTTGGACGATTTGAAGCAAATCTGCGAGGAACTGAACCACG
ATACGAGCGCCAACTCCATTCATCAGGCGTCCTTACGCTCCAGTTTGTTT
ACCGTGTCGACCGGCTATCAGCGTGCCGAGCAACAGCCCGGCAATGTGAA
ACTGCAGTTACGTCCCTATCAACTGGAGAGTCTGGCATGGATGATCGATC
GCGAGAAAGAACGAAGTGTGAGCGACCCATTCGGGATTCGAATCCGTGCG
AAAGATCGCTGCGATGCAGAACGGATTCTGCATTATTGCCCGCTCACAGG
CGCCTTGTCAGCCGTCCCGCCGCCTCCTGTTGTCGGTGGTGTACTCTGTG
GTGGTGTGACATTGTACTCTCTCAATGTCAATGGCATGGAAAGGCTCTTG
AGAAGCGATGGGACTACTTCAGGAGTTATGGCCTTGGCTTCTTTTCTTAC
GCTGTCGAGTGCGCCGAGCTCAGGGTCAAAAGCGAGTTGTGGCCAAGAAG
CCAGTCAAAAAGTCATATTCAAAACAGATGTGAAATGTAGAGATTGCTAA
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protein sequence of Ggra6339.t1

>Ggra6339.t1 ID=Ggra6339.t1|Name=Ggra6339.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=350bp
MHIGMSYNRRKTLLFEQRQWLCKRRSVVQKLDHLDCSNCCRLRLAVYLTP
KAFGSVSVNAAEFCAKSSPYSIMTPVDGGPPLQNPNAKQLAKHRLSRTMT
LPTDSFALHDIFSILQPQLDGTQAWSAVASAAAGSVLDAKLHGSDSNTFR
SLLLTHRGGDIELHKRSQEILDDLKQICEELNHDTSANSIHQASLRSSLF
TVSTGYQRAEQQPGNVKLQLRPYQLESLAWMIDREKERSVSDPFGIRIRA
KDRCDAERILHYCPLTGALSAVPPPPVVGGVLCGGVTLYSLNVNGMERLL
RSDGTTSGVMALASFLTLSSAPSSGSKASCGQEASQKVIFKTDVKCRDC*
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mRNA from alignment at tig00000096_pilon:256647..257696+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6339.t1 ID=Ggra6339.t1|Name=Ggra6339.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1050bp|location=Sequence derived from alignment at tig00000096_pilon:256647..257696+ (Gracilaria gracilis GNS1m male)
ATGCACATTGGCATGTCTTACAATAGGAGGAAAACGCTTCTCTTCGAGCA
GCGCCAATGGCTGTGCAAACGACGCAGTGTTGTACAGAAGCTCGACCATC
TTGATTGTTCCAATTGCTGTCGATTGCGTCTCGCCGTCTATCTAACTCCC
AAGGCATTCGGCTCTGTGTCGGTCAACGCTGCCGAGTTTTGTGCCAAAAG
CTCGCCGTACTCTATCATGACCCCTGTTGATGGTGGACCTCCGCTCCAAA
ATCCAAACGCAAAACAACTCGCGAAGCATCGGCTCTCACGCACAATGACA
TTACCGACGGACAGCTTCGCTCTGCACGACATTTTTTCCATTCTGCAGCC
TCAGCTTGACGGAACACAAGCATGGTCCGCCGTAGCAAGCGCCGCCGCCG
GATCGGTACTGGACGCCAAGCTGCACGGCAGCGATTCCAACACCTTCAGA
TCTCTCTTGTTAACGCACCGAGGCGGTGACATCGAACTCCACAAGCGCAG
CCAGGAGATTTTGGACGATTTGAAGCAAATCTGCGAGGAACTGAACCACG
ATACGAGCGCCAACTCCATTCATCAGGCGTCCTTACGCTCCAGTTTGTTT
ACCGTGTCGACCGGCTATCAGCGTGCCGAGCAACAGCCCGGCAATGTGAA
ACTGCAGTTACGTCCCTATCAACTGGAGAGTCTGGCATGGATGATCGATC
GCGAGAAAGAACGAAGTGTGAGCGACCCATTCGGGATTCGAATCCGTGCG
AAAGATCGCTGCGATGCAGAACGGATTCTGCATTATTGCCCGCTCACAGG
CGCCTTGTCAGCCGTCCCGCCGCCTCCTGTTGTCGGTGGTGTACTCTGTG
GTGGTGTGACATTGTACTCTCTCAATGTCAATGGCATGGAAAGGCTCTTG
AGAAGCGATGGGACTACTTCAGGAGTTATGGCCTTGGCTTCTTTTCTTAC
GCTGTCGAGTGCGCCGAGCTCAGGGTCAAAAGCGAGTTGTGGCCAAGAAG
CCAGTCAAAAAGTCATATTCAAAACAGATGTGAAATGTAGAGATTGCTAA
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Coding sequence (CDS) from alignment at tig00000096_pilon:256647..257696+

>Ggra6339.t1 ID=Ggra6339.t1|Name=Ggra6339.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1050bp|location=Sequence derived from alignment at tig00000096_pilon:256647..257696+ (Gracilaria gracilis GNS1m male)
ATGCACATTGGCATGTCTTACAATAGGAGGAAAACGCTTCTCTTCGAGCA
GCGCCAATGGCTGTGCAAACGACGCAGTGTTGTACAGAAGCTCGACCATC
TTGATTGTTCCAATTGCTGTCGATTGCGTCTCGCCGTCTATCTAACTCCC
AAGGCATTCGGCTCTGTGTCGGTCAACGCTGCCGAGTTTTGTGCCAAAAG
CTCGCCGTACTCTATCATGACCCCTGTTGATGGTGGACCTCCGCTCCAAA
ATCCAAACGCAAAACAACTCGCGAAGCATCGGCTCTCACGCACAATGACA
TTACCGACGGACAGCTTCGCTCTGCACGACATTTTTTCCATTCTGCAGCC
TCAGCTTGACGGAACACAAGCATGGTCCGCCGTAGCAAGCGCCGCCGCCG
GATCGGTACTGGACGCCAAGCTGCACGGCAGCGATTCCAACACCTTCAGA
TCTCTCTTGTTAACGCACCGAGGCGGTGACATCGAACTCCACAAGCGCAG
CCAGGAGATTTTGGACGATTTGAAGCAAATCTGCGAGGAACTGAACCACG
ATACGAGCGCCAACTCCATTCATCAGGCGTCCTTACGCTCCAGTTTGTTT
ACCGTGTCGACCGGCTATCAGCGTGCCGAGCAACAGCCCGGCAATGTGAA
ACTGCAGTTACGTCCCTATCAACTGGAGAGTCTGGCATGGATGATCGATC
GCGAGAAAGAACGAAGTGTGAGCGACCCATTCGGGATTCGAATCCGTGCG
AAAGATCGCTGCGATGCAGAACGGATTCTGCATTATTGCCCGCTCACAGG
CGCCTTGTCAGCCGTCCCGCCGCCTCCTGTTGTCGGTGGTGTACTCTGTG
GTGGTGTGACATTGTACTCTCTCAATGTCAATGGCATGGAAAGGCTCTTG
AGAAGCGATGGGACTACTTCAGGAGTTATGGCCTTGGCTTCTTTTCTTAC
GCTGTCGAGTGCGCCGAGCTCAGGGTCAAAAGCGAGTTGTGGCCAAGAAG
CCAGTCAAAAAGTCATATTCAAAACAGATGTGAAATGTAGAGATTGCTAA
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