Ggra6338.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6338.t1
Unique NameGgra6338.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length597
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000096_piloncontigtig00000096_pilon:253256..255409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog459495.SPLC1_S083020
Preferred namemgsA
PFAMsDAGK_cat,MGS
Max annot lvl1117|Cyanobacteria
Evalue1.61e-26
EggNOG OGsCOG1597@1|root,COG1803@1|root,COG1597@2|Bacteria,COG1803@2|Bacteria,1G25B@1117|Cyanobacteria,1H9PD@1150|Oscillatoriales
DescriptionPFAM Diacylglycerol kinase, catalytic domain
COG categoryGI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6338Ggra6338Gracilaria gracilis GNS1m malegenetig00000096_pilon 253256..255409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6338.t1Ggra6338.t1Gracilaria gracilis GNS1m malepolypeptidetig00000096_pilon 253256..255409 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6338.t1.stop1Ggra6338.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000096_pilon 253256..253258 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6338.t1.CDS1Ggra6338.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000096_pilon 253256..253797 -
Ggra6338.t1.CDS2Ggra6338.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000096_pilon 253884..254079 -
Ggra6338.t1.CDS3Ggra6338.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000096_pilon 254142..254360 -
Ggra6338.t1.CDS4Ggra6338.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000096_pilon 254576..255409 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6338.t1.exon1Ggra6338.t1.exon1Gracilaria gracilis GNS1m maleexontig00000096_pilon 253256..253797 -
Ggra6338.t1.exon2Ggra6338.t1.exon2Gracilaria gracilis GNS1m maleexontig00000096_pilon 253884..254079 -
Ggra6338.t1.exon3Ggra6338.t1.exon3Gracilaria gracilis GNS1m maleexontig00000096_pilon 254142..254360 -
Ggra6338.t1.exon4Ggra6338.t1.exon4Gracilaria gracilis GNS1m maleexontig00000096_pilon 254576..255409 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6338.t1.intron1Ggra6338.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000096_pilon 253798..253883 -
Ggra6338.t1.intron2Ggra6338.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000096_pilon 254080..254141 -
Ggra6338.t1.intron3Ggra6338.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000096_pilon 254361..254575 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6338.t1.start1Ggra6338.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000096_pilon 255407..255409 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6338.t1 ID=Ggra6338.t1|Name=Ggra6338.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=597bp
MRESISLTEWRGQSTVKATLAAKDRLSFVLIIIALANGVYRIVVDDAVPS
KYERHVVKDVLMRHVNAMALKDEHVVVHGDKAELVVGDLPSKIVLHYEPF
RVDFVRKENDLVWASFNSESMFLVETFVEKPSPPGDGAPDETNSPPPDSG
GNEKSESEGQDTNSKDNDYEDTEDDEDDGKEPHEDVTEENVSRSITCDGC
WEETFQRHIDSKPRVPESIGVDVSFPFANHIYGIPERTVRFSLQDTIAEN
NSILSEPYLLYNLDIFEFELVRPLGLYTFRKAPSRRSVAMRARVGVIFNA
VSGTRDPARDLCIIRHQLCASFSRIVIWHTTRENDAQQLTARAIHDGAQL
LHSCSRGLVLAVIPRGTANAFCNAMDIPCNVRRAVRMVGDGCIRRVDLPL
VCIDGREERMLLLASVIHLSHRQPHFNTHVLLKHVSDSYIFARGELQSEQ
VRLKSLVLTGVTIVNAAPVTSVLAHGIGSIKPDEELLELVCIAAEPPLRT
LRKVLSLLKSALLRMRETSASVFGMRASEIHVTCEAPQQVVVDGELVGFM
PVSVDLRGDAPFVDVVAPKAELCRGGDDDSVALWCAWPGTSAACCV*
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spliced messenger RNA

>Ggra6338.t1 ID=Ggra6338.t1|Name=Ggra6338.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1791bp|location=Sequence derived from alignment at tig00000096_pilon:253256..255409- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGAATCCATATCCTTGACGGAATGGAGAGGACAAAGTACAGTGAA
AGCGACCCTTGCTGCGAAAGATCGCCTTTCCTTCGTGCTAATTATCATTG
CACTTGCGAATGGTGTGTATCGCATCGTCGTTGATGACGCCGTCCCATCA
AAATACGAGCGACATGTCGTGAAAGATGTGCTTATGCGCCACGTGAATGC
AATGGCTTTAAAGGATGAACACGTTGTCGTGCATGGTGATAAAGCAGAAC
TTGTTGTTGGCGATCTTCCTTCCAAGATTGTTCTCCACTATGAACCGTTC
CGAGTGGACTTTGTGCGCAAAGAAAACGATTTAGTTTGGGCTTCCTTCAA
TTCAGAGTCTATGTTTCTGGTAGAAACATTCGTCGAGAAACCATCTCCTC
CCGGAGATGGAGCTCCGGATGAAACAAATTCACCTCCACCAGACTCGGGG
GGAAACGAAAAATCGGAGTCGGAGGGTCAAGATACAAACAGCAAGGATAA
CGACTACGAAGACACTGAAGACGATGAAGACGATGGCAAAGAGCCACATG
AAGACGTAACCGAAGAAAACGTATCAAGGTCGATTACTTGTGATGGTTGC
TGGGAGGAAACCTTCCAGCGCCATATTGATTCAAAACCTCGTGTGCCCGA
GTCTATTGGAGTGGACGTGTCATTCCCGTTTGCAAATCACATATACGGAA
TACCAGAGCGCACCGTGCGGTTTTCTTTGCAAGATACGATTGCCGAAAAC
AACAGCATCTTGTCCGAGCCGTATCTTCTTTACAACCTAGATATTTTCGA
GTTCGAACTTGTTAGACCACTTGGTCTATATACGTTTCGTAAAGCTCCGT
CGCGCCGTTCCGTCGCCATGCGCGCGCGCGTGGGCGTCATCTTCAATGCC
GTGAGCGGAACAAGAGATCCTGCGCGCGACCTGTGCATCATTCGCCACCA
GCTGTGTGCGTCCTTCTCGCGCATTGTGATCTGGCATACCACGCGCGAAA
ACGATGCGCAGCAGCTCACCGCACGCGCCATCCACGACGGCGCGCAACTG
CTGCACAGCTGTAGCCGCGGCTTGGTGCTGGCCGTCATCCCAAGAGGCAC
CGCCAATGCATTCTGCAACGCGATGGACATTCCCTGCAACGTGCGACGCG
CGGTGCGCATGGTGGGCGATGGATGCATTCGTCGCGTCGACCTGCCGTTG
GTGTGCATCGACGGGCGCGAGGAGCGCATGCTGTTGCTGGCCAGCGTGAT
CCATCTATCACATCGCCAGCCGCACTTCAACACGCACGTGCTGCTCAAAC
ACGTATCCGACAGCTACATCTTTGCGCGCGGCGAGTTGCAGTCGGAGCAG
GTGCGGCTCAAGTCACTGGTGCTCACGGGTGTCACCATCGTCAACGCTGC
GCCAGTCACGTCCGTCCTGGCGCACGGCATCGGCTCCATCAAACCGGATG
AAGAGCTGCTCGAGTTGGTGTGCATCGCCGCGGAACCGCCGCTGCGCACG
CTCCGAAAGGTGCTGAGTCTGTTGAAAAGCGCCTTATTACGCATGCGAGA
GACGAGCGCAAGTGTGTTTGGAATGCGCGCGAGCGAGATTCATGTCACTT
GTGAAGCGCCGCAGCAGGTGGTGGTGGACGGCGAACTGGTCGGCTTCATG
CCCGTCAGCGTGGATTTGCGCGGCGACGCGCCGTTTGTGGACGTCGTGGC
GCCGAAGGCGGAGTTGTGTCGTGGCGGCGACGACGATTCAGTCGCGCTCT
GGTGCGCATGGCCAGGAACGTCCGCGGCGTGCTGCGTTTGA
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protein sequence of Ggra6338.t1

>Ggra6338.t1 ID=Ggra6338.t1|Name=Ggra6338.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=597bp
MRESISLTEWRGQSTVKATLAAKDRLSFVLIIIALANGVYRIVVDDAVPS
KYERHVVKDVLMRHVNAMALKDEHVVVHGDKAELVVGDLPSKIVLHYEPF
RVDFVRKENDLVWASFNSESMFLVETFVEKPSPPGDGAPDETNSPPPDSG
GNEKSESEGQDTNSKDNDYEDTEDDEDDGKEPHEDVTEENVSRSITCDGC
WEETFQRHIDSKPRVPESIGVDVSFPFANHIYGIPERTVRFSLQDTIAEN
NSILSEPYLLYNLDIFEFELVRPLGLYTFRKAPSRRSVAMRARVGVIFNA
VSGTRDPARDLCIIRHQLCASFSRIVIWHTTRENDAQQLTARAIHDGAQL
LHSCSRGLVLAVIPRGTANAFCNAMDIPCNVRRAVRMVGDGCIRRVDLPL
VCIDGREERMLLLASVIHLSHRQPHFNTHVLLKHVSDSYIFARGELQSEQ
VRLKSLVLTGVTIVNAAPVTSVLAHGIGSIKPDEELLELVCIAAEPPLRT
LRKVLSLLKSALLRMRETSASVFGMRASEIHVTCEAPQQVVVDGELVGFM
PVSVDLRGDAPFVDVVAPKAELCRGGDDDSVALWCAWPGTSAACCV*
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mRNA from alignment at tig00000096_pilon:253256..255409-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6338.t1 ID=Ggra6338.t1|Name=Ggra6338.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2154bp|location=Sequence derived from alignment at tig00000096_pilon:253256..255409- (Gracilaria gracilis GNS1m male)
ATGAGGGAATCCATATCCTTGACGGAATGGAGAGGACAAAGTACAGTGAA
AGCGACCCTTGCTGCGAAAGATCGCCTTTCCTTCGTGCTAATTATCATTG
CACTTGCGAATGGTGTGTATCGCATCGTCGTTGATGACGCCGTCCCATCA
AAATACGAGCGACATGTCGTGAAAGATGTGCTTATGCGCCACGTGAATGC
AATGGCTTTAAAGGATGAACACGTTGTCGTGCATGGTGATAAAGCAGAAC
TTGTTGTTGGCGATCTTCCTTCCAAGATTGTTCTCCACTATGAACCGTTC
CGAGTGGACTTTGTGCGCAAAGAAAACGATTTAGTTTGGGCTTCCTTCAA
TTCAGAGTCTATGTTTCTGGTAGAAACATTCGTCGAGAAACCATCTCCTC
CCGGAGATGGAGCTCCGGATGAAACAAATTCACCTCCACCAGACTCGGGG
GGAAACGAAAAATCGGAGTCGGAGGGTCAAGATACAAACAGCAAGGATAA
CGACTACGAAGACACTGAAGACGATGAAGACGATGGCAAAGAGCCACATG
AAGACGTAACCGAAGAAAACGTATCAAGGTCGATTACTTGTGATGGTTGC
TGGGAGGAAACCTTCCAGCGCCATATTGATTCAAAACCTCGTGTGCCCGA
GTCTATTGGAGTGGACGTGTCATTCCCGTTTGCAAATCACATATACGGAA
TACCAGAGCGCACCGTGCGGTTTTCTTTGCAAGATACGATTGCCGAAAAC
AACAGCATCTTGTCCGAGCCGTATCTTCTTTACAACCTAGATATTTTCGA
GTTCGAACTTGTTAGACCACTTGGTCTATATACGGTTCAATCCCATTTCT
GTTCGCTCGTAACGGAAAGGAGAACGCGGGCTTTCTGTGGCTGAACACAG
CAGAGACCTACGTTGATATAAAGACTCTGGAACAAGGACAGCATACTCAC
TGGCTTTCCGTGTTGCCACCGATTCGTGCGTTGCGCGCGTCGCGTCGCGC
GCGCGTATTGCACTTCGCTCGGCGCCGACGCGCACCAGCCTTCTCGTAGT
TTCGTAAAGCTCCGTCGCGCCGTTCCGTCGCCATGCGCGCGCGCGTGGGC
GTCATCTTCAATGCCGTGAGCGGAACAAGAGATCCTGCGCGCGACCTGTG
CATCATTCGCCACCAGCTGTGTGCGTCCTTCTCGCGCATTGTGATCTGGC
ATACCACGCGCGAAAACGATGCGCAGCAGCTCACCGCACGCGCCATCCAC
GACGGCGCGCAACTGCTGGTGGCGAACGGCGGCGACGGAACCGTAACCGC
GCGGTCGCTTCGGCCATTCACGCTGCGTAGCACAGCTGTAGCCGCGGCTT
GGTGCTGGCCGTCATCCCAAGAGGCACCGCCAATGCATTCTGCAACGCGA
TGGACATTCCCTGCAACGTGCGACGCGCGGTGCGCATGGTGGGCGATGGA
TGCATTCGTCGCGTCGACCTGCCGTTGGTGTGCATCGACGGGCGCGAGGA
GCGCATGCTGTTGCTGGCCAGCGTGAGTCTGGAGGCCCGCGCCGTGAGCG
GCGCTCGCCCACATATGAAGCGAATGTTCGGCGTTCTCGCGTACGGCATT
TGCGACATCCAGTCCATCTATCACATCGCCAGCCGCACTTCAACACGCAC
GTGCTGCTCAAACACGTATCCGACAGCTACATCTTTGCGCGCGGCGAGTT
GCAGTCGGAGCAGGTGCGGCTCAAGTCACTGGTGCTCACGGGTGTCACCA
TCGTCAACGCTGCGCCAGTCACGTCCGTCCTGGCGCACGGCATCGGCTCC
ATCAAACCGGATGAAGAGCTGCTCGAGTTGGTGTGCATCGCCGCGGAACC
GCCGCTGCGCACGCTCCGAAAGGTGCTGAGTCTGTTGAAAAGCGCCTTAT
TACGCATGCGAGAGACGAGCGCAAGTGTGTTTGGAATGCGCGCGAGCGAG
ATTCATGTCACTTGTGAAGCGCCGCAGCAGGTGGTGGTGGACGGCGAACT
GGTCGGCTTCATGCCCGTCAGCGTGGATTTGCGCGGCGACGCGCCGTTTG
TGGACGTCGTGGCGCCGAAGGCGGAGTTGTGTCGTGGCGGCGACGACGAT
TCAGTCGCGCTCTGGTGCGCATGGCCAGGAACGTCCGCGGCGTGCTGCGT
TTGA
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Coding sequence (CDS) from alignment at tig00000096_pilon:253256..255409-

>Ggra6338.t1 ID=Ggra6338.t1|Name=Ggra6338.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1791bp|location=Sequence derived from alignment at tig00000096_pilon:253256..255409- (Gracilaria gracilis GNS1m male)
ATGAGGGAATCCATATCCTTGACGGAATGGAGAGGACAAAGTACAGTGAA
AGCGACCCTTGCTGCGAAAGATCGCCTTTCCTTCGTGCTAATTATCATTG
CACTTGCGAATGGTGTGTATCGCATCGTCGTTGATGACGCCGTCCCATCA
AAATACGAGCGACATGTCGTGAAAGATGTGCTTATGCGCCACGTGAATGC
AATGGCTTTAAAGGATGAACACGTTGTCGTGCATGGTGATAAAGCAGAAC
TTGTTGTTGGCGATCTTCCTTCCAAGATTGTTCTCCACTATGAACCGTTC
CGAGTGGACTTTGTGCGCAAAGAAAACGATTTAGTTTGGGCTTCCTTCAA
TTCAGAGTCTATGTTTCTGGTAGAAACATTCGTCGAGAAACCATCTCCTC
CCGGAGATGGAGCTCCGGATGAAACAAATTCACCTCCACCAGACTCGGGG
GGAAACGAAAAATCGGAGTCGGAGGGTCAAGATACAAACAGCAAGGATAA
CGACTACGAAGACACTGAAGACGATGAAGACGATGGCAAAGAGCCACATG
AAGACGTAACCGAAGAAAACGTATCAAGGTCGATTACTTGTGATGGTTGC
TGGGAGGAAACCTTCCAGCGCCATATTGATTCAAAACCTCGTGTGCCCGA
GTCTATTGGAGTGGACGTGTCATTCCCGTTTGCAAATCACATATACGGAA
TACCAGAGCGCACCGTGCGGTTTTCTTTGCAAGATACGATTGCCGAAAAC
AACAGCATCTTGTCCGAGCCGTATCTTCTTTACAACCTAGATATTTTCGA
GTTCGAACTTGTTAGACCACTTGGTCTATATACGTTTCGTAAAGCTCCGT
CGCGCCGTTCCGTCGCCATGCGCGCGCGCGTGGGCGTCATCTTCAATGCC
GTGAGCGGAACAAGAGATCCTGCGCGCGACCTGTGCATCATTCGCCACCA
GCTGTGTGCGTCCTTCTCGCGCATTGTGATCTGGCATACCACGCGCGAAA
ACGATGCGCAGCAGCTCACCGCACGCGCCATCCACGACGGCGCGCAACTG
CTGCACAGCTGTAGCCGCGGCTTGGTGCTGGCCGTCATCCCAAGAGGCAC
CGCCAATGCATTCTGCAACGCGATGGACATTCCCTGCAACGTGCGACGCG
CGGTGCGCATGGTGGGCGATGGATGCATTCGTCGCGTCGACCTGCCGTTG
GTGTGCATCGACGGGCGCGAGGAGCGCATGCTGTTGCTGGCCAGCGTGAT
CCATCTATCACATCGCCAGCCGCACTTCAACACGCACGTGCTGCTCAAAC
ACGTATCCGACAGCTACATCTTTGCGCGCGGCGAGTTGCAGTCGGAGCAG
GTGCGGCTCAAGTCACTGGTGCTCACGGGTGTCACCATCGTCAACGCTGC
GCCAGTCACGTCCGTCCTGGCGCACGGCATCGGCTCCATCAAACCGGATG
AAGAGCTGCTCGAGTTGGTGTGCATCGCCGCGGAACCGCCGCTGCGCACG
CTCCGAAAGGTGCTGAGTCTGTTGAAAAGCGCCTTATTACGCATGCGAGA
GACGAGCGCAAGTGTGTTTGGAATGCGCGCGAGCGAGATTCATGTCACTT
GTGAAGCGCCGCAGCAGGTGGTGGTGGACGGCGAACTGGTCGGCTTCATG
CCCGTCAGCGTGGATTTGCGCGGCGACGCGCCGTTTGTGGACGTCGTGGC
GCCGAAGGCGGAGTTGTGTCGTGGCGGCGACGACGATTCAGTCGCGCTCT
GGTGCGCATGGCCAGGAACGTCCGCGGCGTGCTGCGTTTGA
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