Ggra6337.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6337.t1
Unique NameGgra6337.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length200
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000096_piloncontigtig00000096_pilon:248771..252041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1541065.JRFE01000007_gene5076
Preferred namemgsA
PFAMsDAGK_cat,MGS
Max annot lvl1117|Cyanobacteria
Evalue2.32e-12
EggNOG OGsCOG1597@1|root,COG1803@1|root,COG1597@2|Bacteria,COG1803@2|Bacteria,1G25B@1117|Cyanobacteria,3VIUK@52604|Pleurocapsales
DescriptionTIGRFAM lipid kinase, YegS Rv2252 BmrU family
COG categoryGI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6337Ggra6337Gracilaria gracilis GNS1m malegenetig00000096_pilon 248771..252041 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6337.t1Ggra6337.t1Gracilaria gracilis GNS1m malepolypeptidetig00000096_pilon 248771..252041 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6337.t1.stop1Ggra6337.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000096_pilon 248771..248773 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6337.t1.CDS1Ggra6337.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000096_pilon 248771..249151 -
Ggra6337.t1.CDS2Ggra6337.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000096_pilon 251823..252041 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6337.t1.exon1Ggra6337.t1.exon1Gracilaria gracilis GNS1m maleexontig00000096_pilon 248771..249151 -
Ggra6337.t1.exon2Ggra6337.t1.exon2Gracilaria gracilis GNS1m maleexontig00000096_pilon 251823..252041 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6337.t1.intron1Ggra6337.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000096_pilon 249152..251822 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6337.t1.start1Ggra6337.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000096_pilon 252039..252041 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6337.t1 ID=Ggra6337.t1|Name=Ggra6337.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=200bp
MRFLWRVDRARRKSPCPDVADVGRGVAMCGRKLRRAHGSARKMVVFADAR
DAVRGRMVERFLDEDGVQICAVESVLAHGIGSIKPDDGLLELVCIAAEPP
LRTLQTVLSLLKSALLRVREPRASVFGMRASEIHVTCEAPQQVVVDGELV
GFTPVRVDLRGNAPFVDVVAPKAELCRGDDDDSVAFWCAWPGTSAACCV*
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spliced messenger RNA

>Ggra6337.t1 ID=Ggra6337.t1|Name=Ggra6337.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=600bp|location=Sequence derived from alignment at tig00000096_pilon:248771..252041- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTTTCTGTGGCGCGTGGATCGCGCGCGACGGAAATCTCCATGTCC
CGACGTGGCGGATGTGGGTCGTGGCGTGGCGATGTGTGGTCGGAAGTTGA
GGCGCGCGCACGGCAGCGCGAGGAAGATGGTGGTGTTCGCCGACGCTAGG
GACGCGGTCCGCGGACGTATGGTAGAGCGATTCTTGGATGAAGACGGCGT
GCAGATATGTGCTGTGGAGTCCGTGCTGGCGCACGGCATCGGCTCCATCA
AACCGGATGACGGGCTGCTCGAGTTGGTGTGCATCGCCGCGGAACCGCCG
CTGCGCACGCTCCAAACGGTGCTGAGTCTGTTGAAAAGCGCCTTGTTACG
CGTGCGAGAGCCGAGGGCAAGTGTGTTTGGAATGCGCGCGAGCGAGATTC
ATGTCACTTGTGAAGCGCCGCAGCAGGTGGTGGTGGACGGTGAACTGGTG
GGCTTCACGCCCGTCAGGGTGGATTTGCGCGGCAATGCGCCGTTTGTGGA
CGTCGTGGCGCCGAAGGCGGAGCTGTGTCGTGGCGACGACGACGATTCAG
TCGCATTCTGGTGCGCATGGCCAGGAACGTCCGCGGCATGCTGCGTTTGA
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protein sequence of Ggra6337.t1

>Ggra6337.t1 ID=Ggra6337.t1|Name=Ggra6337.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=200bp
MRFLWRVDRARRKSPCPDVADVGRGVAMCGRKLRRAHGSARKMVVFADAR
DAVRGRMVERFLDEDGVQICAVESVLAHGIGSIKPDDGLLELVCIAAEPP
LRTLQTVLSLLKSALLRVREPRASVFGMRASEIHVTCEAPQQVVVDGELV
GFTPVRVDLRGNAPFVDVVAPKAELCRGDDDDSVAFWCAWPGTSAACCV*
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mRNA from alignment at tig00000096_pilon:248771..252041-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6337.t1 ID=Ggra6337.t1|Name=Ggra6337.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3271bp|location=Sequence derived from alignment at tig00000096_pilon:248771..252041- (Gracilaria gracilis GNS1m male)
ATGCGCTTTCTGTGGCGCGTGGATCGCGCGCGACGGAAATCTCCATGTCC
CGACGTGGCGGATGTGGGTCGTGGCGTGGCGATGTGTGGTCGGAAGTTGA
GGCGCGCGCACGGCAGCGCGAGGAAGATGGTGGTGTTCGCCGACGCTAGG
GACGCGGTCCGCGGACGTATGGTAGAGCGATTCTTGGATGAAGACGGCGT
GCAGATATGTGCTGTGGAGGTGGGTGGCGGCTGCGACAAAGTGGGTCGCT
CGCAGACGTGTTGGTGGTGGCAGCTGGAACGACGTTGTCGAGGTCGTGGA
CGAATTGGTGCGCAACGTGTGTGACGCGACGCCACAATGTCACCCATGCG
GCATGGGTGACATTGTGGCGCGGTCCATGCCCAAACCATTCCGAAAATAT
CATAGGAGTATGGACGCCAATTACGGGGCTTGGTGACGTCATTTGTGGTC
TTCTACGCTGCTATTTAATGGGTGCATCCAGAAAAGGTCGAACCACCAGC
CCACTAAATCCGTCAACATGGCAGATTACCAAATCGCGGGGGTGCGTTGT
CAAGCGGCTACAGTACAGTGTATAGAAAATCCTTCAAAAATTAATGTAAA
TTAGGGTTGAGTCTGGCGGATGGTTTGGAGCTCTGGAGTCACCTCAAAGG
TGTGACTTTACCTGGCCATATTTGGCGGGGCAGTGACCAATATTAAAAGC
TTGTGATTGGCCAGAATGTGGCCAGGTGCCAGTTTGATTATTTCTGGATG
AACCCAATGTTTGAGAAGCCCGAAAGTCTGAACATACCTGTAGTGCCCGC
ATCAACACCTATGCCATTCACGCCTCCCGTCCGTGGCTCTCCTTGGGTTG
CTTCACGGCTGATTTTCTTCGACTGGTGCAGTTTCACGGTTCTTAGTAAG
AGGAATGGACGCCCAATGTCGTCGCAAAAATTTAGAACCACGGCCTAGAA
GCTGGGATGGACCTTGACACATGTATCCACAAGGCTGTTGGGATTGTTTT
GCAAGACTTCGTAAGATGCCCGCCTGCAGCTTCCGCAATTCTTCGACTCG
TTCAAAAACTGTTGTAGAAGAAGATTTGACCTCCTCTATACGCTTTTCCA
ACATCTCTAGACTGTAACGTTGCATGCCTTGCCCGAAGTTCGGCAAGTTC
AACCTTCTGCTCTGCTTGTAAAACTCTCGCTTTCGCTGCTATCTTGGCTT
CCTGCTGCGTCACTGCCCTGGCTTCCCTTGGTTCGACAACGCTGTCCAAG
CTCTTACCGTGTCTCCAAGAATTTCCTGTTTAGCATTCAGATCGTCCAAC
CGCTTGCTCAGCTCACTGTGCCGCTCTTCATGCTCCCGACAAAGGCACAT
CAGCGCGTGGTTCTCCTTCCATAAAGGTTTATGTTCTCCTCAGCCGCACG
TGCTTATCCTGATGTTGTCTGAAGTTGCCGCTTTATGGAGTCGATTGTCA
TTCTCTGTTTCTCGATAAGCCTGGTCTCTTCATCATGATCTTCTTCTTTA
ATATGGTCTGTAGCCCCTTATTCCGAAGCTCCAGGAAAACGATCTAAAGA
TATTTTTCTCTCCTAAGAAAAGCCCAAAACTTTGATGGCCACCTTCTAAT
CTGATCTATCAGCGTCTTATTCTCTCGCCACGGGGAATCGCCTCCGTTTC
CCATTAGAGATGGATGTACGTCGGTTTGCAGCTCTCGTCGTTAGACCCAA
GAGCCGACACCGTCGAATGACTGGCCAAGACTGCGCGGCGCAGCTCGTGG
AGATTTGTGTTTCAGCGAAGATGGGGGTGCGAGCGTGAGCAAACAGGCAG
TATCCGCGCAGTCGGCAATAGCATCACGAAGACCGAGCGTACACAATTCC
GAACAACACCGCAAATGGGAGTTAGTTCAGAGTATATGGTCACCATGTAG
AAGAGAAAGTGGGCTGACACGTGACGCGGACGACCCGCGCGCGCTCTCAC
CGCAGAGGCCGACAGGAGCGCCAACAGGAATTGTGACAGGGAGAGAGTAC
ACAATTCCGAACAACATCGCAAGACGAGAAGTTAATGCAAGGTGGGTGGT
CACATTGTGACGGGCACGACAGCCATTGCAGAGCCCGGCAAGAGGCGAAA
AGAGGACAGTGTGGCGGATACGATGTGAAGGCACTGACAATTGTCAGTAA
TTGTTGTCGAAGGCGTTACCTGAAGAGGAGAACGCTGGAACAAATGAAGA
CGGAGCAGAGTCACCCTGTGTGTGCGTAACGCATACGTACAAAACATGCT
GACATGGTGCTCCTCGACAGGGGCATTGACGAAGAACGCAGAGGCGGGGG
GAAAAGGACGGAGCACAAGCGTTGTTGCGTGGATTTGGAGGGCTGAATTG
AATGCAGCGGGTGTGGAAGATGAGCTCCACTGAGACTGCTTGGGTGCGCA
AGATGAATGTTGGTGTGCGAAAGTTTGACGATGTGGGTCGATTACATTAC
GCGGTGCTCCAAGACGTGAACTTAAACACGCAATCAGGTGGTGACGTGTC
GTTGGCATTCACAAGACTGATGGTCGCACGGTGGCAGGAGGAGGTTCCCG
TTGGCATGCGCGTGAACTTTTCAGAGCGGACCGAAGCGATAGCACTGACT
ATGTGCACGTGCTCGACGCAAGAGCGAAGCGAGTGCCGGTGGTTGCGCAG
AAGACACGCATTCAACGGTATGGAGCGGAAGATGGCCAGAAGCGAATGTT
CGGCGTTCTCGCGTACGGCATTTGCGGCATCCGATCCATCTATCACATCG
CCAGCCGCACTTCAACACGCACGTGCTGCTAAAACACGTATCCGACAGCC
ACATCTTTGCCCGCGGCGAGTTGCAGTCGGAGCAGGTGCAGCTCAAGTCA
CTGGTGCTCAAAGGCGTCACCATGACCAACGCCGCGCCAGTCCGTGCTGG
CGCACGGCATCGGCTCCATCAAACCGGATGACGGGCTGCTCGAGTTGGTG
TGCATCGCCGCGGAACCGCCGCTGCGCACGCTCCAAACGGTGCTGAGTCT
GTTGAAAAGCGCCTTGTTACGCGTGCGAGAGCCGAGGGCAAGTGTGTTTG
GAATGCGCGCGAGCGAGATTCATGTCACTTGTGAAGCGCCGCAGCAGGTG
GTGGTGGACGGTGAACTGGTGGGCTTCACGCCCGTCAGGGTGGATTTGCG
CGGCAATGCGCCGTTTGTGGACGTCGTGGCGCCGAAGGCGGAGCTGTGTC
GTGGCGACGACGACGATTCAGTCGCATTCTGGTGCGCATGGCCAGGAACG
TCCGCGGCATGCTGCGTTTGA
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Coding sequence (CDS) from alignment at tig00000096_pilon:248771..252041-

>Ggra6337.t1 ID=Ggra6337.t1|Name=Ggra6337.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=600bp|location=Sequence derived from alignment at tig00000096_pilon:248771..252041- (Gracilaria gracilis GNS1m male)
ATGCGCTTTCTGTGGCGCGTGGATCGCGCGCGACGGAAATCTCCATGTCC
CGACGTGGCGGATGTGGGTCGTGGCGTGGCGATGTGTGGTCGGAAGTTGA
GGCGCGCGCACGGCAGCGCGAGGAAGATGGTGGTGTTCGCCGACGCTAGG
GACGCGGTCCGCGGACGTATGGTAGAGCGATTCTTGGATGAAGACGGCGT
GCAGATATGTGCTGTGGAGTCCGTGCTGGCGCACGGCATCGGCTCCATCA
AACCGGATGACGGGCTGCTCGAGTTGGTGTGCATCGCCGCGGAACCGCCG
CTGCGCACGCTCCAAACGGTGCTGAGTCTGTTGAAAAGCGCCTTGTTACG
CGTGCGAGAGCCGAGGGCAAGTGTGTTTGGAATGCGCGCGAGCGAGATTC
ATGTCACTTGTGAAGCGCCGCAGCAGGTGGTGGTGGACGGTGAACTGGTG
GGCTTCACGCCCGTCAGGGTGGATTTGCGCGGCAATGCGCCGTTTGTGGA
CGTCGTGGCGCCGAAGGCGGAGCTGTGTCGTGGCGACGACGACGATTCAG
TCGCATTCTGGTGCGCATGGCCAGGAACGTCCGCGGCATGCTGCGTTTGA
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