Ggra6333.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6333.t1
Unique NameGgra6333.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length572
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000096_piloncontigtig00000096_pilon:201815..203968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121033.AUCF01000006_gene4133
Preferred namepepN
PFAMsDUF3458,DUF3458_C,Peptidase_M1
Max annot lvl204441|Rhodospirillales
KEGG rclassRC00096,RC00141
KEGG koko:K01256
KEGG ReactionR00899,R04951
KEGG Pathwayko00480,ko01100,map00480,map01100
Evalue1.36e-48
EggNOG OGsCOG0308@1|root,COG0308@2|Bacteria,1MUCI@1224|Proteobacteria,2TRUM@28211|Alphaproteobacteria,2JR96@204441|Rhodospirillales
EC3.4.11.2
Descriptionaminopeptidase N
COG categoryE
BRITEko00000,ko00001,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6333Ggra6333Gracilaria gracilis GNS1m malegenetig00000096_pilon 201815..203968 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6333.t1Ggra6333.t1Gracilaria gracilis GNS1m malepolypeptidetig00000096_pilon 201815..203968 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6333.t1.start1Ggra6333.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000096_pilon 201815..201817 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6333.t1.CDS1Ggra6333.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000096_pilon 201815..202571 +
Ggra6333.t1.CDS2Ggra6333.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000096_pilon 202693..202797 +
Ggra6333.t1.CDS3Ggra6333.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000096_pilon 202902..203307 +
Ggra6333.t1.CDS4Ggra6333.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000096_pilon 203521..203968 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6333.t1.exon1Ggra6333.t1.exon1Gracilaria gracilis GNS1m maleexontig00000096_pilon 201815..202571 +
Ggra6333.t1.exon2Ggra6333.t1.exon2Gracilaria gracilis GNS1m maleexontig00000096_pilon 202693..202797 +
Ggra6333.t1.exon3Ggra6333.t1.exon3Gracilaria gracilis GNS1m maleexontig00000096_pilon 202902..203307 +
Ggra6333.t1.exon4Ggra6333.t1.exon4Gracilaria gracilis GNS1m maleexontig00000096_pilon 203521..203968 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6333.t1.intron1Ggra6333.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000096_pilon 202572..202692 +
Ggra6333.t1.intron2Ggra6333.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000096_pilon 202798..202901 +
Ggra6333.t1.intron3Ggra6333.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000096_pilon 203308..203520 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6333.t1.stop1Ggra6333.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000096_pilon 203966..203968 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6333.t1 ID=Ggra6333.t1|Name=Ggra6333.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=572bp
MATTTASNPVLTPRAVADVSTNTHNLRWRRLLPSQKVKYLADYTPPSYFV
SHTDLCFELHDDGLDTLVRGKLQIRPACDAATPLVLVGEALALQPASLKI
DGKVLQDSEYVYDQTANTLIISPAILPTSVFTFESVAKIRTAKSTVLEGL
YMSQGEYCSQCEAEGFRRITFYVDRPDGMATFSVRVEANPNKYPMLLSNG
NCVSSGHSADNRHWAQFEDPPPKPCYLFALVAGDLSHLSDKLVTMNVIDY
NLMVLACCGGVAAKRAGSVERKLCGIAIHKEIQADVNHASEMLAKMIEEQ
RLAEKPKVGAEQLALAALEASNAVQEREAEVSENLAVVQPKVNAAREAVG
SIRKELLDELRALPSPPPAVRVALEAVMMDLDDSRRKAKAQHSCSHIRAQ
MRSSELISILRSTGSLRLSYRHRKGGKEFCMERDEECFRVDASTLESFSA
SFIKDESSTVTRGSAFGLNDGAVALVLVSRSKAVELGLSDFATIRGFADA
EVEPEQFTTPPSLSIPKALKCASRSMDEVDVFELNEAFSVVALANSMLMA
LLEEKVNLFGRRRELGTSSRV*
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spliced messenger RNA

>Ggra6333.t1 ID=Ggra6333.t1|Name=Ggra6333.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1716bp|location=Sequence derived from alignment at tig00000096_pilon:201815..203968+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGACAACAACTGCATCAAACCCGGTGCTAACGCCTCGTGCTGTCGC
TGACGTTTCCACAAACACACACAACCTGCGATGGCGCAGATTGCTGCCGA
GCCAAAAGGTCAAGTATTTGGCCGATTATACTCCACCTTCGTACTTTGTT
TCGCACACAGACCTGTGTTTTGAGCTGCATGATGATGGACTTGACACGTT
GGTGCGCGGCAAGCTACAGATTCGACCTGCTTGTGATGCTGCCACGCCGC
TTGTTCTTGTCGGCGAGGCACTTGCTTTGCAGCCTGCGTCGCTCAAGATT
GATGGAAAAGTGCTACAGGATTCGGAATATGTATACGATCAAACCGCTAA
TACGCTCATCATTTCTCCTGCCATATTGCCTACCAGTGTCTTTACTTTTG
AAAGCGTTGCCAAGATTCGCACGGCGAAGAGTACTGTGCTGGAGGGTCTG
TACATGTCCCAGGGTGAGTACTGTTCTCAATGCGAAGCTGAAGGCTTTCG
TAGAATTACTTTCTATGTGGATCGCCCGGATGGTATGGCCACCTTCTCCG
TTCGTGTAGAAGCGAATCCTAACAAGTACCCTATGCTTCTCAGTAATGGA
AACTGTGTTTCTTCGGGTCATTCTGCTGATAATCGTCATTGGGCTCAATT
TGAGGACCCACCCCCCAAGCCTTGTTACTTGTTTGCCTTGGTTGCCGGCG
ATCTTTCTCATTTGAGCGACAAACTTGTCACCATGAATGTGATCGATTAC
AACCTGATGGTACTTGCCTGTTGTGGAGGTGTTGCAGCGAAGAGAGCAGG
CAGCGTTGAAAGAAAACTATGTGGTATAGCAATCCACAAGGAAATCCAAG
CGGATGTCAATCATGCGAGCGAGATGCTGGCTAAGATGATTGAAGAACAG
CGCTTAGCAGAGAAGCCCAAAGTCGGTGCTGAACAACTCGCTCTGGCAGC
TCTCGAGGCGTCGAATGCCGTACAAGAAAGAGAAGCAGAAGTTTCAGAAA
ACTTGGCTGTTGTTCAGCCTAAAGTCAATGCAGCGAGGGAGGCCGTTGGC
TCGATCAGAAAAGAACTTCTGGACGAATTGCGGGCTTTGCCAAGTCCCCC
TCCAGCAGTAAGAGTAGCTCTAGAAGCTGTCATGATGGATTTGGATGACT
CAAGGAGGAAAGCTAAAGCTCAGCATTCATGCAGTCATATTCGAGCGCAA
ATGCGTAGTTCAGAACTCATCTCCATTTTACGTTCCACAGGCTCGCTTCG
GCTATCGTATCGGCATCGCAAAGGAGGGAAGGAGTTTTGTATGGAAAGAG
ATGAGGAATGCTTCCGCGTCGATGCGTCCACTCTAGAGTCATTTTCAGCA
TCTTTCATCAAAGACGAAAGCAGTACAGTAACCAGAGGAAGTGCGTTCGG
ATTGAATGATGGTGCAGTGGCGTTAGTGCTTGTTAGCAGATCAAAAGCCG
TTGAACTCGGTTTATCAGACTTTGCCACTATACGTGGATTTGCCGACGCA
GAAGTAGAACCAGAACAGTTTACCACACCACCATCATTATCTATTCCAAA
GGCGTTGAAATGCGCTAGCAGGAGCATGGACGAAGTTGATGTGTTTGAAT
TGAACGAGGCCTTCTCTGTGGTGGCTTTGGCAAACTCGATGCTTATGGCA
TTACTGGAAGAAAAGGTGAACCTCTTCGGAAGGCGCAGAGAGCTTGGGAC
ATCCAGTAGGGTGTAG
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protein sequence of Ggra6333.t1

>Ggra6333.t1 ID=Ggra6333.t1|Name=Ggra6333.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=572bp
MATTTASNPVLTPRAVADVSTNTHNLRWRRLLPSQKVKYLADYTPPSYFV
SHTDLCFELHDDGLDTLVRGKLQIRPACDAATPLVLVGEALALQPASLKI
DGKVLQDSEYVYDQTANTLIISPAILPTSVFTFESVAKIRTAKSTVLEGL
YMSQGEYCSQCEAEGFRRITFYVDRPDGMATFSVRVEANPNKYPMLLSNG
NCVSSGHSADNRHWAQFEDPPPKPCYLFALVAGDLSHLSDKLVTMNVIDY
NLMVLACCGGVAAKRAGSVERKLCGIAIHKEIQADVNHASEMLAKMIEEQ
RLAEKPKVGAEQLALAALEASNAVQEREAEVSENLAVVQPKVNAAREAVG
SIRKELLDELRALPSPPPAVRVALEAVMMDLDDSRRKAKAQHSCSHIRAQ
MRSSELISILRSTGSLRLSYRHRKGGKEFCMERDEECFRVDASTLESFSA
SFIKDESSTVTRGSAFGLNDGAVALVLVSRSKAVELGLSDFATIRGFADA
EVEPEQFTTPPSLSIPKALKCASRSMDEVDVFELNEAFSVVALANSMLMA
LLEEKVNLFGRRRELGTSSRV*
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mRNA from alignment at tig00000096_pilon:201815..203968+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6333.t1 ID=Ggra6333.t1|Name=Ggra6333.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2154bp|location=Sequence derived from alignment at tig00000096_pilon:201815..203968+ (Gracilaria gracilis GNS1m male)
ATGGCGACAACAACTGCATCAAACCCGGTGCTAACGCCTCGTGCTGTCGC
TGACGTTTCCACAAACACACACAACCTGCGATGGCGCAGATTGCTGCCGA
GCCAAAAGGTCAAGTATTTGGCCGATTATACTCCACCTTCGTACTTTGTT
TCGCACACAGACCTGTGTTTTGAGCTGCATGATGATGGACTTGACACGTT
GGTGCGCGGCAAGCTACAGATTCGACCTGCTTGTGATGCTGCCACGCCGC
TTGTTCTTGTCGGCGAGGCACTTGCTTTGCAGCCTGCGTCGCTCAAGATT
GATGGAAAAGTGCTACAGGATTCGGAATATGTATACGATCAAACCGCTAA
TACGCTCATCATTTCTCCTGCCATATTGCCTACCAGTGTCTTTACTTTTG
AAAGCGTTGCCAAGATTCGCACGGCGAAGAGTACTGTGCTGGAGGGTCTG
TACATGTCCCAGGGTGAGTACTGTTCTCAATGCGAAGCTGAAGGCTTTCG
TAGAATTACTTTCTATGTGGATCGCCCGGATGGTATGGCCACCTTCTCCG
TTCGTGTAGAAGCGAATCCTAACAAGTACCCTATGCTTCTCAGTAATGGA
AACTGTGTTTCTTCGGGTCATTCTGCTGATAATCGTCATTGGGCTCAATT
TGAGGACCCACCCCCCAAGCCTTGTTACTTGTTTGCCTTGGTTGCCGGCG
ATCTTTCTCATTTGAGCGACAAACTTGTCACCATGAATGTGATCGATTAC
AACCTGAGTCCATCAAAACATTGCATGCCATTGCGCTGCGGTTGGCAAAC
GCTCGTGCATTTGCAAACCCTTTCAACGAGGAATGAAGACGAGAGGCCGG
CATGACGCCTGAGTGCGTGACGCCCTAGTGGTACTTGCCTGTTGTGGAGG
TGTTGCAGCGAAGAGAGCAGGCAGCGTTGAAAGAAAACTATGTGGTATAG
CAATCCACAAGGAAATCCAAGCGGATGTCAATCGTCACAGTGAAGGTCTT
TGTAGACTGCGCAATGCAGGGACAGCGGTCGACATTCTGAAGGAGTCTAT
CTGTGAGCAACTGAGAGATTGCGGGCCAAAGAAACAGATGCGAGCGAGAT
GCTGGCTAAGATGATTGAAGAACAGCGCTTAGCAGAGAAGCCCAAAGTCG
GTGCTGAACAACTCGCTCTGGCAGCTCTCGAGGCGTCGAATGCCGTACAA
GAAAGAGAAGCAGAAGTTTCAGAAAACTTGGCTGTTGTTCAGCCTAAAGT
CAATGCAGCGAGGGAGGCCGTTGGCTCGATCAGAAAAGAACTTCTGGACG
AATTGCGGGCTTTGCCAAGTCCCCCTCCAGCAGTAAGAGTAGCTCTAGAA
GCTGTCATGATGGATTTGGATGACTCAAGGAGGAAAGCTAAAGCTCAGCA
TTCATGCAGTCATATTCGAGCGCAAATGCGTAGTTCAGAACTCATCTCCA
TTTTACGTTCCACAGGCTCGCTTCGGCTATCGTATCGGCATCGGTTAGTA
GACGGACTGCTGAACGACGCGTTAATCGAGCCATATAGCGAGAACCATAT
GGGTCTTTTCGCTGAAATTTGCTCAAAGCGTCATGGCATAACCCGGGAAA
TGCAAGATAGACACGCAAAGGAAAGCTATGGATAGATCTATCGACGGTCG
CAAGCAGCATGGGAAGATCGAAAGTTCTATTCAGAAGTTGTACCAGTCGT
TGTAAGCAAAGGAGGGAAGGAGTTTTGTATGGAAAGAGATGAGGAATGCT
TCCGCGTCGATGCGTCCACTCTAGAGTCATTTTCAGCATCTTTCATCAAA
GACGAAAGCAGTACAGTAACCAGAGGAAGTGCGTTCGGATTGAATGATGG
TGCAGTGGCGTTAGTGCTTGTTAGCAGATCAAAAGCCGTTGAACTCGGTT
TATCAGACTTTGCCACTATACGTGGATTTGCCGACGCAGAAGTAGAACCA
GAACAGTTTACCACACCACCATCATTATCTATTCCAAAGGCGTTGAAATG
CGCTAGCAGGAGCATGGACGAAGTTGATGTGTTTGAATTGAACGAGGCCT
TCTCTGTGGTGGCTTTGGCAAACTCGATGCTTATGGCATTACTGGAAGAA
AAGGTGAACCTCTTCGGAAGGCGCAGAGAGCTTGGGACATCCAGTAGGGT
GTAG
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Coding sequence (CDS) from alignment at tig00000096_pilon:201815..203968+

>Ggra6333.t1 ID=Ggra6333.t1|Name=Ggra6333.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1716bp|location=Sequence derived from alignment at tig00000096_pilon:201815..203968+ (Gracilaria gracilis GNS1m male)
ATGGCGACAACAACTGCATCAAACCCGGTGCTAACGCCTCGTGCTGTCGC
TGACGTTTCCACAAACACACACAACCTGCGATGGCGCAGATTGCTGCCGA
GCCAAAAGGTCAAGTATTTGGCCGATTATACTCCACCTTCGTACTTTGTT
TCGCACACAGACCTGTGTTTTGAGCTGCATGATGATGGACTTGACACGTT
GGTGCGCGGCAAGCTACAGATTCGACCTGCTTGTGATGCTGCCACGCCGC
TTGTTCTTGTCGGCGAGGCACTTGCTTTGCAGCCTGCGTCGCTCAAGATT
GATGGAAAAGTGCTACAGGATTCGGAATATGTATACGATCAAACCGCTAA
TACGCTCATCATTTCTCCTGCCATATTGCCTACCAGTGTCTTTACTTTTG
AAAGCGTTGCCAAGATTCGCACGGCGAAGAGTACTGTGCTGGAGGGTCTG
TACATGTCCCAGGGTGAGTACTGTTCTCAATGCGAAGCTGAAGGCTTTCG
TAGAATTACTTTCTATGTGGATCGCCCGGATGGTATGGCCACCTTCTCCG
TTCGTGTAGAAGCGAATCCTAACAAGTACCCTATGCTTCTCAGTAATGGA
AACTGTGTTTCTTCGGGTCATTCTGCTGATAATCGTCATTGGGCTCAATT
TGAGGACCCACCCCCCAAGCCTTGTTACTTGTTTGCCTTGGTTGCCGGCG
ATCTTTCTCATTTGAGCGACAAACTTGTCACCATGAATGTGATCGATTAC
AACCTGATGGTACTTGCCTGTTGTGGAGGTGTTGCAGCGAAGAGAGCAGG
CAGCGTTGAAAGAAAACTATGTGGTATAGCAATCCACAAGGAAATCCAAG
CGGATGTCAATCATGCGAGCGAGATGCTGGCTAAGATGATTGAAGAACAG
CGCTTAGCAGAGAAGCCCAAAGTCGGTGCTGAACAACTCGCTCTGGCAGC
TCTCGAGGCGTCGAATGCCGTACAAGAAAGAGAAGCAGAAGTTTCAGAAA
ACTTGGCTGTTGTTCAGCCTAAAGTCAATGCAGCGAGGGAGGCCGTTGGC
TCGATCAGAAAAGAACTTCTGGACGAATTGCGGGCTTTGCCAAGTCCCCC
TCCAGCAGTAAGAGTAGCTCTAGAAGCTGTCATGATGGATTTGGATGACT
CAAGGAGGAAAGCTAAAGCTCAGCATTCATGCAGTCATATTCGAGCGCAA
ATGCGTAGTTCAGAACTCATCTCCATTTTACGTTCCACAGGCTCGCTTCG
GCTATCGTATCGGCATCGCAAAGGAGGGAAGGAGTTTTGTATGGAAAGAG
ATGAGGAATGCTTCCGCGTCGATGCGTCCACTCTAGAGTCATTTTCAGCA
TCTTTCATCAAAGACGAAAGCAGTACAGTAACCAGAGGAAGTGCGTTCGG
ATTGAATGATGGTGCAGTGGCGTTAGTGCTTGTTAGCAGATCAAAAGCCG
TTGAACTCGGTTTATCAGACTTTGCCACTATACGTGGATTTGCCGACGCA
GAAGTAGAACCAGAACAGTTTACCACACCACCATCATTATCTATTCCAAA
GGCGTTGAAATGCGCTAGCAGGAGCATGGACGAAGTTGATGTGTTTGAAT
TGAACGAGGCCTTCTCTGTGGTGGCTTTGGCAAACTCGATGCTTATGGCA
TTACTGGAAGAAAAGGTGAACCTCTTCGGAAGGCGCAGAGAGCTTGGGAC
ATCCAGTAGGGTGTAG
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