Ggra6332.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6332.t1
Unique NameGgra6332.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length184
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000096_piloncontigtig00000096_pilon:200583..201134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6332Ggra6332Gracilaria gracilis GNS1m malegenetig00000096_pilon 200583..201134 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6332.t1.stop1Ggra6332.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000096_pilon 200583..200585 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6332.t1.CDS1Ggra6332.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000096_pilon 200583..201134 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6332.t1.exon1Ggra6332.t1.exon1Gracilaria gracilis GNS1m maleexontig00000096_pilon 200583..201134 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6332.t1.start1Ggra6332.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000096_pilon 201132..201134 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6332.t1Ggra6332.t1Gracilaria gracilis GNS1m malepolypeptidetig00000096_pilon 200583..201134 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6332.t1 ID=Ggra6332.t1|Name=Ggra6332.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=184bp
MANKVPFDLQEKLLQETKLLMTKHTQDWQEGSSLHGEEEREAKNAFITYS
RPYEKLIKKVSALAYACLEEVMVKANKPMLLKLLHETIDPEDPTDCAMVR
YRKNVRQGIDLHCDKLPLWKAIVIYVQPGHCDDLEDGLEIHRDGDHDLLD
VRERDVVVISPREMHSVPNVIRRTGRFTVVVSF*
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spliced messenger RNA

>Ggra6332.t1 ID=Ggra6332.t1|Name=Ggra6332.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=552bp|location=Sequence derived from alignment at tig00000096_pilon:200583..201134- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAACAAGGTGCCCTTCGACTTGCAAGAAAAACTGCTACAAGAAAC
GAAACTTCTCATGACAAAGCACACACAGGATTGGCAGGAGGGTTCTTCTT
TGCACGGAGAGGAAGAAAGAGAAGCCAAAAATGCGTTCATAACGTACTCC
AGGCCTTACGAGAAGCTGATAAAAAAGGTCTCTGCTCTTGCATACGCTTG
TCTAGAAGAGGTGATGGTTAAGGCCAATAAGCCGATGTTACTGAAGTTAT
TACATGAAACAATAGACCCAGAAGACCCAACGGACTGCGCTATGGTGCGA
TACCGAAAGAACGTTAGGCAAGGTATTGATCTACACTGTGACAAGCTTCC
TCTTTGGAAGGCAATAGTCATTTATGTCCAACCGGGACATTGTGATGATC
TTGAAGATGGTTTGGAGATCCATCGAGATGGCGACCACGATTTGTTGGAT
GTGCGCGAGCGTGACGTAGTTGTAATTTCACCGCGTGAAATGCATTCTGT
TCCAAACGTTATTAGAAGAACTGGTAGGTTTACTGTTGTAGTTTCGTTCT
AG
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protein sequence of Ggra6332.t1

>Ggra6332.t1 ID=Ggra6332.t1|Name=Ggra6332.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=184bp
MANKVPFDLQEKLLQETKLLMTKHTQDWQEGSSLHGEEEREAKNAFITYS
RPYEKLIKKVSALAYACLEEVMVKANKPMLLKLLHETIDPEDPTDCAMVR
YRKNVRQGIDLHCDKLPLWKAIVIYVQPGHCDDLEDGLEIHRDGDHDLLD
VRERDVVVISPREMHSVPNVIRRTGRFTVVVSF*
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mRNA from alignment at tig00000096_pilon:200583..201134-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6332.t1 ID=Ggra6332.t1|Name=Ggra6332.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=552bp|location=Sequence derived from alignment at tig00000096_pilon:200583..201134- (Gracilaria gracilis GNS1m male)
ATGGCAAACAAGGTGCCCTTCGACTTGCAAGAAAAACTGCTACAAGAAAC
GAAACTTCTCATGACAAAGCACACACAGGATTGGCAGGAGGGTTCTTCTT
TGCACGGAGAGGAAGAAAGAGAAGCCAAAAATGCGTTCATAACGTACTCC
AGGCCTTACGAGAAGCTGATAAAAAAGGTCTCTGCTCTTGCATACGCTTG
TCTAGAAGAGGTGATGGTTAAGGCCAATAAGCCGATGTTACTGAAGTTAT
TACATGAAACAATAGACCCAGAAGACCCAACGGACTGCGCTATGGTGCGA
TACCGAAAGAACGTTAGGCAAGGTATTGATCTACACTGTGACAAGCTTCC
TCTTTGGAAGGCAATAGTCATTTATGTCCAACCGGGACATTGTGATGATC
TTGAAGATGGTTTGGAGATCCATCGAGATGGCGACCACGATTTGTTGGAT
GTGCGCGAGCGTGACGTAGTTGTAATTTCACCGCGTGAAATGCATTCTGT
TCCAAACGTTATTAGAAGAACTGGTAGGTTTACTGTTGTAGTTTCGTTCT
AG
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Coding sequence (CDS) from alignment at tig00000096_pilon:200583..201134-

>Ggra6332.t1 ID=Ggra6332.t1|Name=Ggra6332.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=552bp|location=Sequence derived from alignment at tig00000096_pilon:200583..201134- (Gracilaria gracilis GNS1m male)
ATGGCAAACAAGGTGCCCTTCGACTTGCAAGAAAAACTGCTACAAGAAAC
GAAACTTCTCATGACAAAGCACACACAGGATTGGCAGGAGGGTTCTTCTT
TGCACGGAGAGGAAGAAAGAGAAGCCAAAAATGCGTTCATAACGTACTCC
AGGCCTTACGAGAAGCTGATAAAAAAGGTCTCTGCTCTTGCATACGCTTG
TCTAGAAGAGGTGATGGTTAAGGCCAATAAGCCGATGTTACTGAAGTTAT
TACATGAAACAATAGACCCAGAAGACCCAACGGACTGCGCTATGGTGCGA
TACCGAAAGAACGTTAGGCAAGGTATTGATCTACACTGTGACAAGCTTCC
TCTTTGGAAGGCAATAGTCATTTATGTCCAACCGGGACATTGTGATGATC
TTGAAGATGGTTTGGAGATCCATCGAGATGGCGACCACGATTTGTTGGAT
GTGCGCGAGCGTGACGTAGTTGTAATTTCACCGCGTGAAATGCATTCTGT
TCCAAACGTTATTAGAAGAACTGGTAGGTTTACTGTTGTAGTTTCGTTCT
AG
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