Ggra6323.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6323.t1
Unique NameGgra6323.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length341
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000096_piloncontigtig00000096_pilon:106493..107515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S75_253V6.1
PFAMsTHF_DHG_CYH,THF_DHG_CYH_C
Max annot lvl33090|Viridiplantae
GOsGO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019219,GO:0019222,GO:0019238,GO:0019752,GO:0031323,GO:0034641,GO:0042558,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0044030,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046653,GO:0050789,GO:0050794,GO:0051052,GO:0051171,GO:0051186,GO:0055114,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:1901360,GO:1901564
Evalue9.84e-121
EggNOG OGsCOG0190@1|root,KOG0089@2759|Eukaryota,37K6Z@33090|Viridiplantae,3GFZP@35493|Streptophyta
DescriptionBifunctional protein FolD
COG categoryH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6323Ggra6323Gracilaria gracilis GNS1m malegenetig00000096_pilon 106493..107515 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6323.t1.start1Ggra6323.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000096_pilon 106493..106495 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6323.t1.CDS1Ggra6323.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000096_pilon 106493..107515 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6323.t1.exon1Ggra6323.t1.exon1Gracilaria gracilis GNS1m maleexontig00000096_pilon 106493..107515 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6323.t1.stop1Ggra6323.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000096_pilon 107513..107515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6323.t1Ggra6323.t1Gracilaria gracilis GNS1m malepolypeptidetig00000096_pilon 106493..107515 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6323.t1 ID=Ggra6323.t1|Name=Ggra6323.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=341bp
MFEAQIFLFAIDEKKIGNSLWVSQNGVQETTPAPVFAVPHAQAQKLDGKL
TAATIRQEIAREIASLVQTRGETARPGLAVVIVGERRDSQTYVRSKRKAC
DEVGIVSFRFELPTDCTQEQLEEIVDQLNKRKDVHGILIQLPLPDHIDDE
KLLDRIRLEKDVNGFHPLNIGRLCMSGRTPPLFIPCTPQGCIELLDRYAI
GIEGKNAVVIGRSNIVGLPVAMLLLHRNATVTICHSRTKDTREKIQQADI
VIAACGCAEFVKADWLKPGAVVIDVGINAVEDATKKKGYRLVGDVDYESS
ADVASYITLVPGGVGPMTIAMLLSNTLRACREQIGEQDNS*
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spliced messenger RNA

>Ggra6323.t1 ID=Ggra6323.t1|Name=Ggra6323.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1023bp|location=Sequence derived from alignment at tig00000096_pilon:106493..107515+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGAGGCTCAGATCTTCCTTTTTGCAATTGACGAGAAAAAGATCGG
GAACTCCCTTTGGGTCTCGCAAAATGGTGTCCAAGAGACAACTCCTGCAC
CTGTTTTTGCAGTACCTCATGCACAGGCACAGAAGCTAGACGGAAAACTA
ACTGCTGCCACAATACGCCAAGAAATTGCACGGGAGATCGCGAGCCTGGT
GCAGACAAGAGGAGAGACTGCTCGACCTGGTCTAGCAGTAGTTATTGTTG
GTGAGCGAAGGGACTCTCAAACGTATGTTAGATCAAAGAGGAAGGCATGT
GATGAAGTTGGAATAGTGTCGTTTCGGTTTGAATTGCCCACAGACTGTAC
TCAAGAACAGCTTGAAGAGATTGTCGATCAACTCAATAAACGCAAAGATG
TGCATGGTATTCTCATACAGCTACCCTTACCAGATCACATTGATGATGAA
AAGCTTCTCGATCGCATCAGGCTGGAGAAGGATGTGAACGGGTTCCATCC
GCTTAACATCGGGCGGTTATGCATGAGTGGAAGGACACCTCCTCTGTTCA
TTCCATGTACGCCACAGGGCTGCATAGAGCTGCTCGATCGTTACGCAATT
GGTATTGAAGGAAAGAATGCAGTTGTCATCGGGAGAAGCAATATCGTAGG
ACTGCCCGTTGCAATGCTTCTGCTGCATCGAAACGCGACAGTAACTATAT
GTCACTCAAGGACAAAGGACACTCGCGAGAAAATTCAGCAGGCGGATATT
GTAATCGCAGCCTGTGGCTGTGCAGAGTTCGTTAAGGCTGACTGGTTGAA
ACCTGGCGCCGTTGTGATTGATGTCGGAATCAACGCCGTTGAAGATGCCA
CAAAGAAGAAGGGATATCGTCTCGTGGGGGATGTGGATTATGAGAGCTCG
GCCGATGTTGCATCCTACATAACTCTAGTTCCTGGTGGCGTAGGTCCAAT
GACTATTGCTATGTTGCTTTCGAACACTTTGCGAGCGTGTAGAGAGCAGA
TTGGGGAACAAGATAATTCATAA
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protein sequence of Ggra6323.t1

>Ggra6323.t1 ID=Ggra6323.t1|Name=Ggra6323.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=341bp
MFEAQIFLFAIDEKKIGNSLWVSQNGVQETTPAPVFAVPHAQAQKLDGKL
TAATIRQEIAREIASLVQTRGETARPGLAVVIVGERRDSQTYVRSKRKAC
DEVGIVSFRFELPTDCTQEQLEEIVDQLNKRKDVHGILIQLPLPDHIDDE
KLLDRIRLEKDVNGFHPLNIGRLCMSGRTPPLFIPCTPQGCIELLDRYAI
GIEGKNAVVIGRSNIVGLPVAMLLLHRNATVTICHSRTKDTREKIQQADI
VIAACGCAEFVKADWLKPGAVVIDVGINAVEDATKKKGYRLVGDVDYESS
ADVASYITLVPGGVGPMTIAMLLSNTLRACREQIGEQDNS*
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mRNA from alignment at tig00000096_pilon:106493..107515+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6323.t1 ID=Ggra6323.t1|Name=Ggra6323.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1023bp|location=Sequence derived from alignment at tig00000096_pilon:106493..107515+ (Gracilaria gracilis GNS1m male)
ATGTTCGAGGCTCAGATCTTCCTTTTTGCAATTGACGAGAAAAAGATCGG
GAACTCCCTTTGGGTCTCGCAAAATGGTGTCCAAGAGACAACTCCTGCAC
CTGTTTTTGCAGTACCTCATGCACAGGCACAGAAGCTAGACGGAAAACTA
ACTGCTGCCACAATACGCCAAGAAATTGCACGGGAGATCGCGAGCCTGGT
GCAGACAAGAGGAGAGACTGCTCGACCTGGTCTAGCAGTAGTTATTGTTG
GTGAGCGAAGGGACTCTCAAACGTATGTTAGATCAAAGAGGAAGGCATGT
GATGAAGTTGGAATAGTGTCGTTTCGGTTTGAATTGCCCACAGACTGTAC
TCAAGAACAGCTTGAAGAGATTGTCGATCAACTCAATAAACGCAAAGATG
TGCATGGTATTCTCATACAGCTACCCTTACCAGATCACATTGATGATGAA
AAGCTTCTCGATCGCATCAGGCTGGAGAAGGATGTGAACGGGTTCCATCC
GCTTAACATCGGGCGGTTATGCATGAGTGGAAGGACACCTCCTCTGTTCA
TTCCATGTACGCCACAGGGCTGCATAGAGCTGCTCGATCGTTACGCAATT
GGTATTGAAGGAAAGAATGCAGTTGTCATCGGGAGAAGCAATATCGTAGG
ACTGCCCGTTGCAATGCTTCTGCTGCATCGAAACGCGACAGTAACTATAT
GTCACTCAAGGACAAAGGACACTCGCGAGAAAATTCAGCAGGCGGATATT
GTAATCGCAGCCTGTGGCTGTGCAGAGTTCGTTAAGGCTGACTGGTTGAA
ACCTGGCGCCGTTGTGATTGATGTCGGAATCAACGCCGTTGAAGATGCCA
CAAAGAAGAAGGGATATCGTCTCGTGGGGGATGTGGATTATGAGAGCTCG
GCCGATGTTGCATCCTACATAACTCTAGTTCCTGGTGGCGTAGGTCCAAT
GACTATTGCTATGTTGCTTTCGAACACTTTGCGAGCGTGTAGAGAGCAGA
TTGGGGAACAAGATAATTCATAA
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Coding sequence (CDS) from alignment at tig00000096_pilon:106493..107515+

>Ggra6323.t1 ID=Ggra6323.t1|Name=Ggra6323.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1023bp|location=Sequence derived from alignment at tig00000096_pilon:106493..107515+ (Gracilaria gracilis GNS1m male)
ATGTTCGAGGCTCAGATCTTCCTTTTTGCAATTGACGAGAAAAAGATCGG
GAACTCCCTTTGGGTCTCGCAAAATGGTGTCCAAGAGACAACTCCTGCAC
CTGTTTTTGCAGTACCTCATGCACAGGCACAGAAGCTAGACGGAAAACTA
ACTGCTGCCACAATACGCCAAGAAATTGCACGGGAGATCGCGAGCCTGGT
GCAGACAAGAGGAGAGACTGCTCGACCTGGTCTAGCAGTAGTTATTGTTG
GTGAGCGAAGGGACTCTCAAACGTATGTTAGATCAAAGAGGAAGGCATGT
GATGAAGTTGGAATAGTGTCGTTTCGGTTTGAATTGCCCACAGACTGTAC
TCAAGAACAGCTTGAAGAGATTGTCGATCAACTCAATAAACGCAAAGATG
TGCATGGTATTCTCATACAGCTACCCTTACCAGATCACATTGATGATGAA
AAGCTTCTCGATCGCATCAGGCTGGAGAAGGATGTGAACGGGTTCCATCC
GCTTAACATCGGGCGGTTATGCATGAGTGGAAGGACACCTCCTCTGTTCA
TTCCATGTACGCCACAGGGCTGCATAGAGCTGCTCGATCGTTACGCAATT
GGTATTGAAGGAAAGAATGCAGTTGTCATCGGGAGAAGCAATATCGTAGG
ACTGCCCGTTGCAATGCTTCTGCTGCATCGAAACGCGACAGTAACTATAT
GTCACTCAAGGACAAAGGACACTCGCGAGAAAATTCAGCAGGCGGATATT
GTAATCGCAGCCTGTGGCTGTGCAGAGTTCGTTAAGGCTGACTGGTTGAA
ACCTGGCGCCGTTGTGATTGATGTCGGAATCAACGCCGTTGAAGATGCCA
CAAAGAAGAAGGGATATCGTCTCGTGGGGGATGTGGATTATGAGAGCTCG
GCCGATGTTGCATCCTACATAACTCTAGTTCCTGGTGGCGTAGGTCCAAT
GACTATTGCTATGTTGCTTTCGAACACTTTGCGAGCGTGTAGAGAGCAGA
TTGGGGAACAAGATAATTCATAA
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