Ggra6322.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6322.t1
Unique NameGgra6322.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length364
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000096_piloncontigtig00000096_pilon:100459..101550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0216288
PFAMsRNA_pol_A_bac,RNA_pol_L
Max annot lvl554915|Amoebozoa
KEGG rclassRC02795
KEGG koko:K03027
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map01100,map03020,map04623,map05169
KEGG ModuleM00181,M00182
GOsGO:0000428,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005730,GO:0005736,GO:0006139,GO:0006351,GO:0006360,GO:0006383,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Evalue1.72e-83
EggNOG OGsCOG0202@1|root,KOG1521@2759|Eukaryota,3X8IA@554915|Amoebozoa
DescriptionDNA-directed RNA polymerases I and III subunit RPAC1
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6322Ggra6322Gracilaria gracilis GNS1m malegenetig00000096_pilon 100459..101550 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6322.t1.stop1Ggra6322.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000096_pilon 100459..100461 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6322.t1.CDS1Ggra6322.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000096_pilon 100459..101550 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6322.t1.exon1Ggra6322.t1.exon1Gracilaria gracilis GNS1m maleexontig00000096_pilon 100459..101550 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6322.t1.start1Ggra6322.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000096_pilon 101548..101550 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6322.t1Ggra6322.t1Gracilaria gracilis GNS1m malepolypeptidetig00000096_pilon 100459..101550 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6322.t1 ID=Ggra6322.t1|Name=Ggra6322.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=364bp
MEAPNKEFSAHIEKMRSRVGIGFKKVHNPVGMYGARTFAPLGYDNSLNMD
DFKDNLRIDVSFCDPDRVVFDMVHVDAPIANAIRRILLVEVPSVAVETVF
VHSNSSIMHDEMFAHRLGLVPLRIDPRRLTVWNKGDAVDAGNTVKFSLKV
RCEMNKGVSRDDEAPPDVLYKGHKVCSGDMKYVPMPGQVFEPSSMPVQDD
IVIAKMRPGQEIHIEMNATKNIGKEHAKWSPVSTASYRLLPEVSIKREAR
GQLARGVKNLCPADVFDIEDDTAVVARPRDCTMCRECIREKPYSDHVELT
RKRDHFVFDVESTGVMPADDLVVEALNVLTTKCDVVLRALELALKRNSGA
DSDADMGNDDQVL*
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spliced messenger RNA

>Ggra6322.t1 ID=Ggra6322.t1|Name=Ggra6322.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00000096_pilon:100459..101550- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCTCCCAACAAAGAATTTTCAGCTCATATCGAGAAGATGCGTTC
TCGAGTGGGTATAGGCTTCAAGAAAGTCCATAACCCAGTGGGAATGTATG
GTGCCCGCACCTTCGCTCCTCTAGGGTATGATAACAGCCTCAATATGGAT
GATTTTAAAGATAACTTGAGAATCGATGTTTCATTTTGCGACCCGGATCG
GGTCGTGTTTGACATGGTCCACGTCGATGCCCCAATTGCGAACGCAATTC
GAAGAATATTGTTGGTAGAAGTACCTTCGGTTGCTGTTGAAACTGTCTTT
GTTCACAGTAATAGTTCAATCATGCACGATGAGATGTTTGCACATCGTCT
CGGCCTTGTGCCGCTACGCATTGATCCACGGAGATTGACTGTGTGGAATA
AGGGCGACGCCGTTGACGCCGGTAACACCGTCAAGTTCTCACTCAAAGTA
CGTTGTGAAATGAACAAAGGTGTTTCACGAGATGACGAGGCACCTCCAGA
CGTCTTGTATAAGGGGCACAAAGTTTGCTCTGGAGATATGAAATATGTTC
CAATGCCCGGTCAAGTCTTTGAACCATCTTCGATGCCTGTTCAGGACGAC
ATCGTTATAGCGAAGATGCGCCCTGGACAAGAAATTCACATCGAAATGAA
TGCTACTAAAAACATTGGGAAAGAGCATGCGAAATGGTCTCCAGTCAGCA
CCGCGAGCTATAGATTACTTCCCGAAGTAAGCATAAAAAGAGAGGCCAGG
GGACAGCTGGCTCGAGGTGTAAAGAATTTGTGTCCAGCAGATGTGTTTGA
CATAGAAGATGATACAGCTGTTGTAGCGAGACCGAGAGATTGTACAATGT
GTCGTGAATGTATCCGGGAGAAACCATATTCTGATCATGTGGAACTCACA
AGAAAGAGAGATCATTTTGTTTTCGATGTGGAAAGCACCGGAGTTATGCC
TGCTGATGATTTGGTAGTAGAGGCGCTCAATGTTTTGACCACAAAATGCG
ATGTCGTGCTTCGAGCGCTAGAGCTTGCCCTCAAACGTAATTCTGGTGCG
GACTCGGATGCAGACATGGGCAATGATGATCAAGTATTGTAG
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protein sequence of Ggra6322.t1

>Ggra6322.t1 ID=Ggra6322.t1|Name=Ggra6322.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=364bp
MEAPNKEFSAHIEKMRSRVGIGFKKVHNPVGMYGARTFAPLGYDNSLNMD
DFKDNLRIDVSFCDPDRVVFDMVHVDAPIANAIRRILLVEVPSVAVETVF
VHSNSSIMHDEMFAHRLGLVPLRIDPRRLTVWNKGDAVDAGNTVKFSLKV
RCEMNKGVSRDDEAPPDVLYKGHKVCSGDMKYVPMPGQVFEPSSMPVQDD
IVIAKMRPGQEIHIEMNATKNIGKEHAKWSPVSTASYRLLPEVSIKREAR
GQLARGVKNLCPADVFDIEDDTAVVARPRDCTMCRECIREKPYSDHVELT
RKRDHFVFDVESTGVMPADDLVVEALNVLTTKCDVVLRALELALKRNSGA
DSDADMGNDDQVL*
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mRNA from alignment at tig00000096_pilon:100459..101550-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6322.t1 ID=Ggra6322.t1|Name=Ggra6322.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00000096_pilon:100459..101550- (Gracilaria gracilis GNS1m male)
ATGGAAGCTCCCAACAAAGAATTTTCAGCTCATATCGAGAAGATGCGTTC
TCGAGTGGGTATAGGCTTCAAGAAAGTCCATAACCCAGTGGGAATGTATG
GTGCCCGCACCTTCGCTCCTCTAGGGTATGATAACAGCCTCAATATGGAT
GATTTTAAAGATAACTTGAGAATCGATGTTTCATTTTGCGACCCGGATCG
GGTCGTGTTTGACATGGTCCACGTCGATGCCCCAATTGCGAACGCAATTC
GAAGAATATTGTTGGTAGAAGTACCTTCGGTTGCTGTTGAAACTGTCTTT
GTTCACAGTAATAGTTCAATCATGCACGATGAGATGTTTGCACATCGTCT
CGGCCTTGTGCCGCTACGCATTGATCCACGGAGATTGACTGTGTGGAATA
AGGGCGACGCCGTTGACGCCGGTAACACCGTCAAGTTCTCACTCAAAGTA
CGTTGTGAAATGAACAAAGGTGTTTCACGAGATGACGAGGCACCTCCAGA
CGTCTTGTATAAGGGGCACAAAGTTTGCTCTGGAGATATGAAATATGTTC
CAATGCCCGGTCAAGTCTTTGAACCATCTTCGATGCCTGTTCAGGACGAC
ATCGTTATAGCGAAGATGCGCCCTGGACAAGAAATTCACATCGAAATGAA
TGCTACTAAAAACATTGGGAAAGAGCATGCGAAATGGTCTCCAGTCAGCA
CCGCGAGCTATAGATTACTTCCCGAAGTAAGCATAAAAAGAGAGGCCAGG
GGACAGCTGGCTCGAGGTGTAAAGAATTTGTGTCCAGCAGATGTGTTTGA
CATAGAAGATGATACAGCTGTTGTAGCGAGACCGAGAGATTGTACAATGT
GTCGTGAATGTATCCGGGAGAAACCATATTCTGATCATGTGGAACTCACA
AGAAAGAGAGATCATTTTGTTTTCGATGTGGAAAGCACCGGAGTTATGCC
TGCTGATGATTTGGTAGTAGAGGCGCTCAATGTTTTGACCACAAAATGCG
ATGTCGTGCTTCGAGCGCTAGAGCTTGCCCTCAAACGTAATTCTGGTGCG
GACTCGGATGCAGACATGGGCAATGATGATCAAGTATTGTAG
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Coding sequence (CDS) from alignment at tig00000096_pilon:100459..101550-

>Ggra6322.t1 ID=Ggra6322.t1|Name=Ggra6322.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1092bp|location=Sequence derived from alignment at tig00000096_pilon:100459..101550- (Gracilaria gracilis GNS1m male)
ATGGAAGCTCCCAACAAAGAATTTTCAGCTCATATCGAGAAGATGCGTTC
TCGAGTGGGTATAGGCTTCAAGAAAGTCCATAACCCAGTGGGAATGTATG
GTGCCCGCACCTTCGCTCCTCTAGGGTATGATAACAGCCTCAATATGGAT
GATTTTAAAGATAACTTGAGAATCGATGTTTCATTTTGCGACCCGGATCG
GGTCGTGTTTGACATGGTCCACGTCGATGCCCCAATTGCGAACGCAATTC
GAAGAATATTGTTGGTAGAAGTACCTTCGGTTGCTGTTGAAACTGTCTTT
GTTCACAGTAATAGTTCAATCATGCACGATGAGATGTTTGCACATCGTCT
CGGCCTTGTGCCGCTACGCATTGATCCACGGAGATTGACTGTGTGGAATA
AGGGCGACGCCGTTGACGCCGGTAACACCGTCAAGTTCTCACTCAAAGTA
CGTTGTGAAATGAACAAAGGTGTTTCACGAGATGACGAGGCACCTCCAGA
CGTCTTGTATAAGGGGCACAAAGTTTGCTCTGGAGATATGAAATATGTTC
CAATGCCCGGTCAAGTCTTTGAACCATCTTCGATGCCTGTTCAGGACGAC
ATCGTTATAGCGAAGATGCGCCCTGGACAAGAAATTCACATCGAAATGAA
TGCTACTAAAAACATTGGGAAAGAGCATGCGAAATGGTCTCCAGTCAGCA
CCGCGAGCTATAGATTACTTCCCGAAGTAAGCATAAAAAGAGAGGCCAGG
GGACAGCTGGCTCGAGGTGTAAAGAATTTGTGTCCAGCAGATGTGTTTGA
CATAGAAGATGATACAGCTGTTGTAGCGAGACCGAGAGATTGTACAATGT
GTCGTGAATGTATCCGGGAGAAACCATATTCTGATCATGTGGAACTCACA
AGAAAGAGAGATCATTTTGTTTTCGATGTGGAAAGCACCGGAGTTATGCC
TGCTGATGATTTGGTAGTAGAGGCGCTCAATGTTTTGACCACAAAATGCG
ATGTCGTGCTTCGAGCGCTAGAGCTTGCCCTCAAACGTAATTCTGGTGCG
GACTCGGATGCAGACATGGGCAATGATGATCAAGTATTGTAG
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