Ggra6321.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6321.t1
Unique NameGgra6321.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length386
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000096_piloncontigtig00000096_pilon:99128..100285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704304.1
PFAMsTim44
Max annot lvl2759|Eukaryota
KEGG koko:K17804
KEGG TC3.A.8.1
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005759,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017038,GO:0017111,GO:0019866,GO:0022804,GO:0022857,GO:0022884,GO:0030150,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032991,GO:0033036,GO:0033220,GO:0033365,GO:0034613,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045184,GO:0046907,GO:0051087,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0098796,GO:0098798,GO:0098800,GO:1904680,GO:1990542
Evalue8.91e-73
EggNOG OGsKOG2580@1|root,KOG2580@2759|Eukaryota
Descriptionprotein import into mitochondrial matrix
COG categoryU
BRITEko00000,ko02000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6321Ggra6321Gracilaria gracilis GNS1m malegenetig00000096_pilon 99128..100285 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6321.t1.start1Ggra6321.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000096_pilon 99128..99130 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6321.t1.CDS1Ggra6321.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000096_pilon 99128..100285 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6321.t1.exon1Ggra6321.t1.exon1Gracilaria gracilis GNS1m maleexontig00000096_pilon 99128..100285 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6321.t1.stop1Ggra6321.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000096_pilon 100283..100285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6321.t1Ggra6321.t1Gracilaria gracilis GNS1m malepolypeptidetig00000096_pilon 99128..100285 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6321.t1 ID=Ggra6321.t1|Name=Ggra6321.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=386bp
MAAFRRLIPFSPTLWHSVKTDSLRENPASRFKDSQMQLSVRLQATLSQKS
EDPNLEERRDSSSPNFTADAENSDESGETSKNSVEKPGAVGGFMRGLIGG
QSVAVDEDAFIAEAKKQGVNIPPPPPQRRVGLVPIKRKKRREEAEEDETI
RDRIFGRFAGSAFMKGAFEAKERIQERIDESDNPLINMFRSIYHRFFAEN
EMAMVVREIRDEDPSFRISELLEQVEINFVPNILGAYLQGDRNSLRENCT
DEAFEMLNASIRERDAEGILMDTNILDVRDVELTAGKLLEDSPVLIVTFN
AQQINCLRDRAGNVIEGQEDDIRAVYYAWAFVKEAEYEDFGPMGGSIGAD
EKENEDPDDEAKSERGDERPWKLTEMVIRGAHSTI*
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spliced messenger RNA

>Ggra6321.t1 ID=Ggra6321.t1|Name=Ggra6321.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1158bp|location=Sequence derived from alignment at tig00000096_pilon:99128..100285+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCGTTCAGGAGACTAATCCCGTTTTCACCTACTCTTTGGCACTC
GGTGAAAACTGATTCACTTAGAGAAAACCCCGCCTCGCGCTTTAAGGATT
CTCAAATGCAGCTATCAGTACGCTTACAAGCAACACTGAGCCAAAAATCA
GAAGATCCAAACCTCGAAGAGAGAAGAGATTCGTCGTCGCCAAACTTCAC
TGCTGACGCTGAGAACAGCGATGAGTCTGGCGAAACATCTAAAAACTCAG
TGGAAAAGCCGGGAGCTGTAGGTGGTTTTATGCGAGGTCTGATCGGTGGC
CAGTCTGTAGCTGTTGATGAAGATGCGTTCATTGCTGAAGCAAAGAAACA
AGGAGTGAATATTCCTCCGCCTCCTCCTCAGCGTCGAGTCGGTCTGGTTC
CGATAAAGCGAAAGAAACGACGAGAGGAAGCCGAAGAGGATGAAACAATA
CGAGACCGGATTTTCGGGCGATTTGCAGGCTCCGCGTTTATGAAAGGTGC
ATTTGAGGCCAAGGAGCGCATTCAGGAACGTATTGATGAAAGCGATAATC
CATTGATTAATATGTTCAGAAGTATCTACCATCGCTTCTTCGCGGAGAAT
GAAATGGCCATGGTGGTCAGGGAAATCCGAGATGAGGACCCATCGTTCAG
AATTTCAGAGTTGTTGGAACAAGTTGAGATAAACTTTGTACCGAACATTT
TGGGGGCTTATCTTCAGGGCGACCGAAATTCGTTGCGAGAGAATTGTACG
GACGAAGCTTTTGAAATGCTCAATGCATCTATTCGCGAGAGAGATGCAGA
GGGTATTCTCATGGATACGAACATATTGGACGTAAGGGATGTAGAGCTCA
CAGCTGGCAAGTTGCTCGAAGATTCTCCAGTTTTGATTGTAACTTTCAAC
GCTCAACAGATTAACTGTCTTCGCGACAGGGCAGGAAATGTGATTGAAGG
ACAGGAAGACGATATTCGCGCAGTGTATTACGCTTGGGCCTTTGTCAAGG
AAGCCGAGTACGAAGACTTCGGTCCTATGGGCGGTAGTATCGGTGCAGAT
GAGAAAGAAAATGAAGATCCCGACGACGAAGCAAAAAGTGAGAGGGGAGA
CGAACGCCCGTGGAAGCTAACAGAGATGGTAATCCGTGGTGCCCACAGCA
CAATTTAG
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protein sequence of Ggra6321.t1

>Ggra6321.t1 ID=Ggra6321.t1|Name=Ggra6321.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=386bp
MAAFRRLIPFSPTLWHSVKTDSLRENPASRFKDSQMQLSVRLQATLSQKS
EDPNLEERRDSSSPNFTADAENSDESGETSKNSVEKPGAVGGFMRGLIGG
QSVAVDEDAFIAEAKKQGVNIPPPPPQRRVGLVPIKRKKRREEAEEDETI
RDRIFGRFAGSAFMKGAFEAKERIQERIDESDNPLINMFRSIYHRFFAEN
EMAMVVREIRDEDPSFRISELLEQVEINFVPNILGAYLQGDRNSLRENCT
DEAFEMLNASIRERDAEGILMDTNILDVRDVELTAGKLLEDSPVLIVTFN
AQQINCLRDRAGNVIEGQEDDIRAVYYAWAFVKEAEYEDFGPMGGSIGAD
EKENEDPDDEAKSERGDERPWKLTEMVIRGAHSTI*
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mRNA from alignment at tig00000096_pilon:99128..100285+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6321.t1 ID=Ggra6321.t1|Name=Ggra6321.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1158bp|location=Sequence derived from alignment at tig00000096_pilon:99128..100285+ (Gracilaria gracilis GNS1m male)
ATGGCTGCGTTCAGGAGACTAATCCCGTTTTCACCTACTCTTTGGCACTC
GGTGAAAACTGATTCACTTAGAGAAAACCCCGCCTCGCGCTTTAAGGATT
CTCAAATGCAGCTATCAGTACGCTTACAAGCAACACTGAGCCAAAAATCA
GAAGATCCAAACCTCGAAGAGAGAAGAGATTCGTCGTCGCCAAACTTCAC
TGCTGACGCTGAGAACAGCGATGAGTCTGGCGAAACATCTAAAAACTCAG
TGGAAAAGCCGGGAGCTGTAGGTGGTTTTATGCGAGGTCTGATCGGTGGC
CAGTCTGTAGCTGTTGATGAAGATGCGTTCATTGCTGAAGCAAAGAAACA
AGGAGTGAATATTCCTCCGCCTCCTCCTCAGCGTCGAGTCGGTCTGGTTC
CGATAAAGCGAAAGAAACGACGAGAGGAAGCCGAAGAGGATGAAACAATA
CGAGACCGGATTTTCGGGCGATTTGCAGGCTCCGCGTTTATGAAAGGTGC
ATTTGAGGCCAAGGAGCGCATTCAGGAACGTATTGATGAAAGCGATAATC
CATTGATTAATATGTTCAGAAGTATCTACCATCGCTTCTTCGCGGAGAAT
GAAATGGCCATGGTGGTCAGGGAAATCCGAGATGAGGACCCATCGTTCAG
AATTTCAGAGTTGTTGGAACAAGTTGAGATAAACTTTGTACCGAACATTT
TGGGGGCTTATCTTCAGGGCGACCGAAATTCGTTGCGAGAGAATTGTACG
GACGAAGCTTTTGAAATGCTCAATGCATCTATTCGCGAGAGAGATGCAGA
GGGTATTCTCATGGATACGAACATATTGGACGTAAGGGATGTAGAGCTCA
CAGCTGGCAAGTTGCTCGAAGATTCTCCAGTTTTGATTGTAACTTTCAAC
GCTCAACAGATTAACTGTCTTCGCGACAGGGCAGGAAATGTGATTGAAGG
ACAGGAAGACGATATTCGCGCAGTGTATTACGCTTGGGCCTTTGTCAAGG
AAGCCGAGTACGAAGACTTCGGTCCTATGGGCGGTAGTATCGGTGCAGAT
GAGAAAGAAAATGAAGATCCCGACGACGAAGCAAAAAGTGAGAGGGGAGA
CGAACGCCCGTGGAAGCTAACAGAGATGGTAATCCGTGGTGCCCACAGCA
CAATTTAG
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Coding sequence (CDS) from alignment at tig00000096_pilon:99128..100285+

>Ggra6321.t1 ID=Ggra6321.t1|Name=Ggra6321.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1158bp|location=Sequence derived from alignment at tig00000096_pilon:99128..100285+ (Gracilaria gracilis GNS1m male)
ATGGCTGCGTTCAGGAGACTAATCCCGTTTTCACCTACTCTTTGGCACTC
GGTGAAAACTGATTCACTTAGAGAAAACCCCGCCTCGCGCTTTAAGGATT
CTCAAATGCAGCTATCAGTACGCTTACAAGCAACACTGAGCCAAAAATCA
GAAGATCCAAACCTCGAAGAGAGAAGAGATTCGTCGTCGCCAAACTTCAC
TGCTGACGCTGAGAACAGCGATGAGTCTGGCGAAACATCTAAAAACTCAG
TGGAAAAGCCGGGAGCTGTAGGTGGTTTTATGCGAGGTCTGATCGGTGGC
CAGTCTGTAGCTGTTGATGAAGATGCGTTCATTGCTGAAGCAAAGAAACA
AGGAGTGAATATTCCTCCGCCTCCTCCTCAGCGTCGAGTCGGTCTGGTTC
CGATAAAGCGAAAGAAACGACGAGAGGAAGCCGAAGAGGATGAAACAATA
CGAGACCGGATTTTCGGGCGATTTGCAGGCTCCGCGTTTATGAAAGGTGC
ATTTGAGGCCAAGGAGCGCATTCAGGAACGTATTGATGAAAGCGATAATC
CATTGATTAATATGTTCAGAAGTATCTACCATCGCTTCTTCGCGGAGAAT
GAAATGGCCATGGTGGTCAGGGAAATCCGAGATGAGGACCCATCGTTCAG
AATTTCAGAGTTGTTGGAACAAGTTGAGATAAACTTTGTACCGAACATTT
TGGGGGCTTATCTTCAGGGCGACCGAAATTCGTTGCGAGAGAATTGTACG
GACGAAGCTTTTGAAATGCTCAATGCATCTATTCGCGAGAGAGATGCAGA
GGGTATTCTCATGGATACGAACATATTGGACGTAAGGGATGTAGAGCTCA
CAGCTGGCAAGTTGCTCGAAGATTCTCCAGTTTTGATTGTAACTTTCAAC
GCTCAACAGATTAACTGTCTTCGCGACAGGGCAGGAAATGTGATTGAAGG
ACAGGAAGACGATATTCGCGCAGTGTATTACGCTTGGGCCTTTGTCAAGG
AAGCCGAGTACGAAGACTTCGGTCCTATGGGCGGTAGTATCGGTGCAGAT
GAGAAAGAAAATGAAGATCCCGACGACGAAGCAAAAAGTGAGAGGGGAGA
CGAACGCCCGTGGAAGCTAACAGAGATGGTAATCCGTGGTGCCCACAGCA
CAATTTAG
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