Ggra6309.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6309.t1
Unique NameGgra6309.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length109
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000096_piloncontigtig00000096_pilon:13932..14258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog51511.ENSCSAVP00000011830
Preferred nameTATDN3
PFAMsTatD_DNase
Max annot lvl33208|Metazoa
KEGG koko:K03424
Evalue2.06e-19
EggNOG OGsCOG0084@1|root,KOG3020@2759|Eukaryota,38GNW@33154|Opisthokonta,3BDHE@33208|Metazoa,3CZ5B@33213|Bilateria,4809E@7711|Chordata
DescriptionTatD DNase domain containing 3
COG categoryL
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6309Ggra6309Gracilaria gracilis GNS1m malegenetig00000096_pilon 13932..14258 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6309.t1.stop1Ggra6309.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000096_pilon 13932..13934 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6309.t1.CDS1Ggra6309.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000096_pilon 13932..14258 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6309.t1.exon1Ggra6309.t1.exon1Gracilaria gracilis GNS1m maleexontig00000096_pilon 13932..14258 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6309.t1.start1Ggra6309.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000096_pilon 14256..14258 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6309.t1Ggra6309.t1Gracilaria gracilis GNS1m malepolypeptidetig00000096_pilon 13932..14258 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6309.t1 ID=Ggra6309.t1|Name=Ggra6309.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=109bp
MHAFDGRAIHAVNALKRMADRLYFSIPPSIARSNSKVKLVRQVALERLLL
ESDAPALAAVAQQRNEPAEIVKTVQLIAGIKVQRADIARQQLWYNSVQLF
PSFHANTS*
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spliced messenger RNA

>Ggra6309.t1 ID=Ggra6309.t1|Name=Ggra6309.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=327bp|location=Sequence derived from alignment at tig00000096_pilon:13932..14258- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGCTTTCGACGGGCGCGCCATACATGCTGTGAACGCGTTGAAGCG
GATGGCGGACCGTCTGTACTTCTCCATCCCGCCGAGCATTGCGCGGTCGA
ATTCGAAGGTGAAGCTCGTGCGGCAAGTGGCGCTGGAACGGTTGCTGCTG
GAGAGCGACGCGCCTGCGCTTGCTGCGGTCGCGCAGCAAAGGAACGAGCC
CGCGGAAATAGTGAAGACCGTGCAGTTGATTGCAGGCATCAAAGTGCAAC
GCGCTGACATCGCTCGTCAGCAGCTGTGGTACAACAGCGTGCAGCTGTTT
CCGTCATTCCACGCAAACACGTCATGA
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protein sequence of Ggra6309.t1

>Ggra6309.t1 ID=Ggra6309.t1|Name=Ggra6309.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=109bp
MHAFDGRAIHAVNALKRMADRLYFSIPPSIARSNSKVKLVRQVALERLLL
ESDAPALAAVAQQRNEPAEIVKTVQLIAGIKVQRADIARQQLWYNSVQLF
PSFHANTS*
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mRNA from alignment at tig00000096_pilon:13932..14258-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6309.t1 ID=Ggra6309.t1|Name=Ggra6309.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=327bp|location=Sequence derived from alignment at tig00000096_pilon:13932..14258- (Gracilaria gracilis GNS1m male)
ATGCACGCTTTCGACGGGCGCGCCATACATGCTGTGAACGCGTTGAAGCG
GATGGCGGACCGTCTGTACTTCTCCATCCCGCCGAGCATTGCGCGGTCGA
ATTCGAAGGTGAAGCTCGTGCGGCAAGTGGCGCTGGAACGGTTGCTGCTG
GAGAGCGACGCGCCTGCGCTTGCTGCGGTCGCGCAGCAAAGGAACGAGCC
CGCGGAAATAGTGAAGACCGTGCAGTTGATTGCAGGCATCAAAGTGCAAC
GCGCTGACATCGCTCGTCAGCAGCTGTGGTACAACAGCGTGCAGCTGTTT
CCGTCATTCCACGCAAACACGTCATGA
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Coding sequence (CDS) from alignment at tig00000096_pilon:13932..14258-

>Ggra6309.t1 ID=Ggra6309.t1|Name=Ggra6309.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=327bp|location=Sequence derived from alignment at tig00000096_pilon:13932..14258- (Gracilaria gracilis GNS1m male)
ATGCACGCTTTCGACGGGCGCGCCATACATGCTGTGAACGCGTTGAAGCG
GATGGCGGACCGTCTGTACTTCTCCATCCCGCCGAGCATTGCGCGGTCGA
ATTCGAAGGTGAAGCTCGTGCGGCAAGTGGCGCTGGAACGGTTGCTGCTG
GAGAGCGACGCGCCTGCGCTTGCTGCGGTCGCGCAGCAAAGGAACGAGCC
CGCGGAAATAGTGAAGACCGTGCAGTTGATTGCAGGCATCAAAGTGCAAC
GCGCTGACATCGCTCGTCAGCAGCTGTGGTACAACAGCGTGCAGCTGTTT
CCGTCATTCCACGCAAACACGTCATGA
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