Ggra6307.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6307.t1
Unique Name	Ggra6307.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	414

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000879_pilon	contig	tig00000879_pilon:523091..524332 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	164328.Phyra81763
PFAMs	Pkinase,SnoaL_2
Max annot lvl	4776\|Peronosporales
Evalue	9.88e-55
EggNOG OGs	KOG0660@1\|root,KOG0660@2759\|Eukaryota,3QE79@4776\|Peronosporales
Description	Protein kinase C conserved region 2 (CalB)
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6307	Ggra6307	Gracilaria gracilis GNS1m male	gene	tig00000879_pilon 523091..524332 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6307.t1.start1	Ggra6307.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000879_pilon 523091..523093 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6307.t1.CDS1	Ggra6307.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000879_pilon 523091..524332 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6307.t1.exon1	Ggra6307.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000879_pilon 523091..524332 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6307.t1.stop1	Ggra6307.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000879_pilon 524330..524332 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6307.t1	Ggra6307.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000879_pilon 523091..524332 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000879_pilon:523091..524332+
coding sequence from alignment at tig00000879_pilon:523091..524332+

mRNA sequence

>Ggra6307.t1 ID=Ggra6307.t1|Name=Ggra6307.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=414bp
MNHLFAKLANRKKARDHGRDVADNEPEEAYEMVKRRAVVNLAILERPLMT
RDEFIVDVRYRNMQLIGSGSYGLVVKAIDTTQNSRVAIKKILRAFSSTRM
ARHVLREVRLLRHLHHPNIVRLLDIDVPGQYSAWDSVYIVTPLLKTDLKT
AFKEGQVEDNLTQKRIAYQLLSALEHMHSLGLMHRDIKSRNVLLDEHMNV
QLCDLGESRFYSKANRDILFEDLPGLQNERELTGAITTMIQSAPELSLGA
EYDAEVDIWAAGCVIAELIRPRHNYLFDSTAKHSHLQEIVNVVGFPTPDI
MELLPDYGRWYLKRMQKSSGNRIAELLGPDVDPLAVDLVEKMLLFSPKRR
ISAKDALRHSWFDEVRTERFSERETYDFCQSEPPGRASKSTLKQLVWEEV
VAFHPEAAKLGIR*

spliced messenger RNA

>Ggra6307.t1 ID=Ggra6307.t1|Name=Ggra6307.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000879_pilon:523091..524332+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCACCTGTTCGCTAAACTTGCTAACAGGAAGAAAGCTCGCGATCA
TGGGCGCGATGTTGCCGACAATGAGCCGGAAGAAGCGTATGAAATGGTAA
AACGCCGAGCCGTCGTCAACCTGGCAATACTTGAGCGACCACTTATGACC
AGAGATGAGTTTATCGTTGACGTTCGGTATCGCAATATGCAGTTAATCGG
CTCTGGCTCTTATGGGCTCGTGGTTAAAGCCATTGACACAACTCAGAATT
CTAGAGTTGCTATTAAGAAGATTCTCAGGGCCTTTTCATCAACCCGAATG
GCTAGACATGTTCTTCGAGAAGTTCGTTTGTTGAGACATCTTCACCATCC
CAATATCGTCCGTTTGCTTGATATTGATGTTCCAGGCCAGTATTCTGCTT
GGGATTCCGTGTACATTGTCACTCCTCTTCTTAAGACAGATTTAAAAACG
GCTTTCAAAGAAGGTCAAGTGGAAGATAATCTAACCCAGAAAAGAATTGC
GTATCAGTTGCTGTCGGCTCTGGAACACATGCATTCCTTGGGCTTGATGC
ATCGAGACATCAAATCAAGAAACGTTTTGCTTGATGAGCACATGAATGTA
CAACTATGCGATCTCGGTGAGTCTCGTTTTTACAGCAAAGCAAATCGAGA
TATTCTGTTTGAAGACTTGCCCGGCCTTCAGAATGAGAGGGAACTCACTG
GTGCTATAACCACTATGATCCAGAGTGCACCAGAACTTAGTTTAGGTGCT
GAGTACGATGCAGAGGTAGATATTTGGGCTGCTGGATGTGTAATCGCAGA
GCTGATTCGTCCTAGGCATAACTACCTTTTTGATTCCACTGCTAAGCACT
CACACTTACAAGAGATTGTGAACGTTGTAGGTTTCCCAACTCCCGATATT
ATGGAACTGCTTCCTGACTACGGGCGTTGGTATCTGAAGCGGATGCAGAA
ATCGAGTGGTAATCGAATTGCAGAACTTTTGGGACCCGATGTTGATCCCC
TAGCTGTGGATCTGGTGGAGAAGATGCTGTTGTTTTCGCCTAAGCGACGC
ATTTCAGCAAAAGACGCATTGAGGCACTCATGGTTTGATGAGGTGAGAAC
AGAAAGATTTTCCGAGCGTGAAACATATGACTTCTGCCAATCAGAGCCAC
CTGGAAGAGCTTCGAAGTCCACGTTAAAACAACTCGTTTGGGAGGAAGTT
GTCGCGTTCCACCCCGAGGCTGCTAAACTGGGCATCCGGTGA

protein sequence of Ggra6307.t1

>Ggra6307.t1 ID=Ggra6307.t1|Name=Ggra6307.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=414bp
MNHLFAKLANRKKARDHGRDVADNEPEEAYEMVKRRAVVNLAILERPLMT
RDEFIVDVRYRNMQLIGSGSYGLVVKAIDTTQNSRVAIKKILRAFSSTRM
ARHVLREVRLLRHLHHPNIVRLLDIDVPGQYSAWDSVYIVTPLLKTDLKT
AFKEGQVEDNLTQKRIAYQLLSALEHMHSLGLMHRDIKSRNVLLDEHMNV
QLCDLGESRFYSKANRDILFEDLPGLQNERELTGAITTMIQSAPELSLGA
EYDAEVDIWAAGCVIAELIRPRHNYLFDSTAKHSHLQEIVNVVGFPTPDI
MELLPDYGRWYLKRMQKSSGNRIAELLGPDVDPLAVDLVEKMLLFSPKRR
ISAKDALRHSWFDEVRTERFSERETYDFCQSEPPGRASKSTLKQLVWEEV
VAFHPEAAKLGIR*

mRNA from alignment at tig00000879_pilon:523091..524332+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6307.t1 ID=Ggra6307.t1|Name=Ggra6307.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000879_pilon:523091..524332+ (Gracilaria gracilis GNS1m male)
ATGAATCACCTGTTCGCTAAACTTGCTAACAGGAAGAAAGCTCGCGATCA
TGGGCGCGATGTTGCCGACAATGAGCCGGAAGAAGCGTATGAAATGGTAA
AACGCCGAGCCGTCGTCAACCTGGCAATACTTGAGCGACCACTTATGACC
AGAGATGAGTTTATCGTTGACGTTCGGTATCGCAATATGCAGTTAATCGG
CTCTGGCTCTTATGGGCTCGTGGTTAAAGCCATTGACACAACTCAGAATT
CTAGAGTTGCTATTAAGAAGATTCTCAGGGCCTTTTCATCAACCCGAATG
GCTAGACATGTTCTTCGAGAAGTTCGTTTGTTGAGACATCTTCACCATCC
CAATATCGTCCGTTTGCTTGATATTGATGTTCCAGGCCAGTATTCTGCTT
GGGATTCCGTGTACATTGTCACTCCTCTTCTTAAGACAGATTTAAAAACG
GCTTTCAAAGAAGGTCAAGTGGAAGATAATCTAACCCAGAAAAGAATTGC
GTATCAGTTGCTGTCGGCTCTGGAACACATGCATTCCTTGGGCTTGATGC
ATCGAGACATCAAATCAAGAAACGTTTTGCTTGATGAGCACATGAATGTA
CAACTATGCGATCTCGGTGAGTCTCGTTTTTACAGCAAAGCAAATCGAGA
TATTCTGTTTGAAGACTTGCCCGGCCTTCAGAATGAGAGGGAACTCACTG
GTGCTATAACCACTATGATCCAGAGTGCACCAGAACTTAGTTTAGGTGCT
GAGTACGATGCAGAGGTAGATATTTGGGCTGCTGGATGTGTAATCGCAGA
GCTGATTCGTCCTAGGCATAACTACCTTTTTGATTCCACTGCTAAGCACT
CACACTTACAAGAGATTGTGAACGTTGTAGGTTTCCCAACTCCCGATATT
ATGGAACTGCTTCCTGACTACGGGCGTTGGTATCTGAAGCGGATGCAGAA
ATCGAGTGGTAATCGAATTGCAGAACTTTTGGGACCCGATGTTGATCCCC
TAGCTGTGGATCTGGTGGAGAAGATGCTGTTGTTTTCGCCTAAGCGACGC
ATTTCAGCAAAAGACGCATTGAGGCACTCATGGTTTGATGAGGTGAGAAC
AGAAAGATTTTCCGAGCGTGAAACATATGACTTCTGCCAATCAGAGCCAC
CTGGAAGAGCTTCGAAGTCCACGTTAAAACAACTCGTTTGGGAGGAAGTT
GTCGCGTTCCACCCCGAGGCTGCTAAACTGGGCATCCGGTGA

Coding sequence (CDS) from alignment at tig00000879_pilon:523091..524332+

>Ggra6307.t1 ID=Ggra6307.t1|Name=Ggra6307.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1242bp|location=Sequence derived from alignment at tig00000879_pilon:523091..524332+ (Gracilaria gracilis GNS1m male)
ATGAATCACCTGTTCGCTAAACTTGCTAACAGGAAGAAAGCTCGCGATCA
TGGGCGCGATGTTGCCGACAATGAGCCGGAAGAAGCGTATGAAATGGTAA
AACGCCGAGCCGTCGTCAACCTGGCAATACTTGAGCGACCACTTATGACC
AGAGATGAGTTTATCGTTGACGTTCGGTATCGCAATATGCAGTTAATCGG
CTCTGGCTCTTATGGGCTCGTGGTTAAAGCCATTGACACAACTCAGAATT
CTAGAGTTGCTATTAAGAAGATTCTCAGGGCCTTTTCATCAACCCGAATG
GCTAGACATGTTCTTCGAGAAGTTCGTTTGTTGAGACATCTTCACCATCC
CAATATCGTCCGTTTGCTTGATATTGATGTTCCAGGCCAGTATTCTGCTT
GGGATTCCGTGTACATTGTCACTCCTCTTCTTAAGACAGATTTAAAAACG
GCTTTCAAAGAAGGTCAAGTGGAAGATAATCTAACCCAGAAAAGAATTGC
GTATCAGTTGCTGTCGGCTCTGGAACACATGCATTCCTTGGGCTTGATGC
ATCGAGACATCAAATCAAGAAACGTTTTGCTTGATGAGCACATGAATGTA
CAACTATGCGATCTCGGTGAGTCTCGTTTTTACAGCAAAGCAAATCGAGA
TATTCTGTTTGAAGACTTGCCCGGCCTTCAGAATGAGAGGGAACTCACTG
GTGCTATAACCACTATGATCCAGAGTGCACCAGAACTTAGTTTAGGTGCT
GAGTACGATGCAGAGGTAGATATTTGGGCTGCTGGATGTGTAATCGCAGA
GCTGATTCGTCCTAGGCATAACTACCTTTTTGATTCCACTGCTAAGCACT
CACACTTACAAGAGATTGTGAACGTTGTAGGTTTCCCAACTCCCGATATT
ATGGAACTGCTTCCTGACTACGGGCGTTGGTATCTGAAGCGGATGCAGAA
ATCGAGTGGTAATCGAATTGCAGAACTTTTGGGACCCGATGTTGATCCCC
TAGCTGTGGATCTGGTGGAGAAGATGCTGTTGTTTTCGCCTAAGCGACGC
ATTTCAGCAAAAGACGCATTGAGGCACTCATGGTTTGATGAGGTGAGAAC
AGAAAGATTTTCCGAGCGTGAAACATATGACTTCTGCCAATCAGAGCCAC
CTGGAAGAGCTTCGAAGTCCACGTTAAAACAACTCGTTTGGGAGGAAGTT
GTCGCGTTCCACCCCGAGGCTGCTAAACTGGGCATCCGGTGA