Ggra6306.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6306.t1
Unique NameGgra6306.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length89
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:521577..522705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6306Ggra6306Gracilaria gracilis GNS1m malegenetig00000879_pilon 521577..522705 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6306.t1Ggra6306.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 521577..522705 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6306.t1.stop1Ggra6306.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 521577..521579 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6306.t1.CDS1Ggra6306.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 521577..521653 -
Ggra6306.t1.CDS2Ggra6306.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000879_pilon 521719..521900 -
Ggra6306.t1.CDS3Ggra6306.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000879_pilon 522698..522705 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6306.t1.exon1Ggra6306.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 521577..521653 -
Ggra6306.t1.exon2Ggra6306.t1.exon2Gracilaria gracilis GNS1m maleexontig00000879_pilon 521719..521900 -
Ggra6306.t1.exon3Ggra6306.t1.exon3Gracilaria gracilis GNS1m maleexontig00000879_pilon 522698..522705 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6306.t1.intron1Ggra6306.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000879_pilon 521654..521718 -
Ggra6306.t1.intron2Ggra6306.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000879_pilon 521901..522697 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6306.t1.start1Ggra6306.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 522703..522705 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6306.t1 ID=Ggra6306.t1|Name=Ggra6306.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=89bp
MARVLSKYEVSEVVNFGSPVKRRSGFTEETDNIRDHMGLQQLAATLGGSA
NCCSLADVEREYEKMLEMALQRGDKQKKRLLQMRPCLD*
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spliced messenger RNA

>Ggra6306.t1 ID=Ggra6306.t1|Name=Ggra6306.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=267bp|location=Sequence derived from alignment at tig00000879_pilon:521577..522705- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCGCGTTTTGTCGAAGTATGAGGTTAGTGAGGTCGTCAATTTTGG
TTCACCGGTGAAGCGCAGATCAGGCTTCACGGAAGAGACTGATAATATTC
GCGACCACATGGGTTTGCAGCAACTGGCTGCAACACTTGGTGGTTCGGCA
AACTGCTGTAGTTTGGCTGATGTGGAAAGAGAATACGAAAAAATGTTGGA
GATGGCGCTACAAAGAGGCGACAAACAAAAGAAGCGTTTATTGCAAATGA
GACCATGTCTGGACTGA
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protein sequence of Ggra6306.t1

>Ggra6306.t1 ID=Ggra6306.t1|Name=Ggra6306.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=89bp
MARVLSKYEVSEVVNFGSPVKRRSGFTEETDNIRDHMGLQQLAATLGGSA
NCCSLADVEREYEKMLEMALQRGDKQKKRLLQMRPCLD*
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mRNA from alignment at tig00000879_pilon:521577..522705-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6306.t1 ID=Ggra6306.t1|Name=Ggra6306.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1129bp|location=Sequence derived from alignment at tig00000879_pilon:521577..522705- (Gracilaria gracilis GNS1m male)
ATGGCCCGGTATGTCGTTTCACAGTTCGGGCAGAGGTTAGTCTTTCTCTA
ACCAGCGACGGAATGAGATGGACTCTATCTGATAGATAGTAGGTGCGTAG
CGAAGGGAATTGTGAAAGTGTTTCAAAACACAAGTGATAGTGTTCCAGAA
AAGCTGGGCTCTTGAAAGTTGGTTAGCAAGTTGGCTCTTTAAACCAAATC
TTCGCGTGAGGAGCCGCCTCGTCATTGCTGGAGCCTTACCGTTCGTATGT
AGATAGGCATGCGCATGCGTGCAGGAGCCAGGGCAGCGGGGTTCCCTGGT
GCCCGTCTGCGCGGGCTGGCCAATGAGAAAAATTGCGAATGTCAGAGCAC
GTCATGTATGAGTCTCATACTATGAGATATGTCGACAAAAATGCAGACTC
TCGCACGCCTTTTTCAAGTGTGGCACAAACTCTGCACTGCCTCCTGACGA
AGTTATGCCCCGCACCCCCCCTTTTCTCCCACCTCTCTCCCTCCTACACA
CCACAACCAGACTTTGCTGCCGTAACCGAAGATGCAAACCAGTGCAGCAA
ACGCTCTCCAGCAGCATGTATTGTTTCGTTTGCAGATGACGTGGCGGTGA
TAGAAACCGATGGGCCACCTTTCTTTGGTTTGTTGTCATAGCTGGGCACC
CAAGGGGATGCATATGAACGGAAAATGATGAAGAAGAATCGTGTTGCGCA
GCTCTTCCCTCTACGGAACACGCAGATCTTTCCCGCCGGCACACACCCGA
CGTTCTACCAAGTTCGCATTTCTCTGTTTGGTCTTTAGTGTGCGAAGCAC
AACAGCGTTTTGTCGAAGTATGAGGTTAGTGAGGTCGTCAATTTTGGTTC
ACCGGTGAAGCGCAGATCAGGCTTCACGGAAGAGACTGATAATATTCGCG
ACCACATGGGTTTGCAGCAACTGGCTGCAACACTTGGTGGTTCGGCAAAC
TGCTGTAGTTTGGCTGATGTGGAAAGAGAATACGAAAGTGAGTATGATAC
AGAACTGTTAGTTAAGGCGAACGCTGTGGACTAGCTAACCGAGAACAACA
AGAAATGTTGGAGATGGCGCTACAAAGAGGCGACAAACAAAAGAAGCGTT
TATTGCAAATGAGACCATGTCTGGACTGA
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Coding sequence (CDS) from alignment at tig00000879_pilon:521577..522705-

>Ggra6306.t1 ID=Ggra6306.t1|Name=Ggra6306.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=267bp|location=Sequence derived from alignment at tig00000879_pilon:521577..522705- (Gracilaria gracilis GNS1m male)
ATGGCCCGCGTTTTGTCGAAGTATGAGGTTAGTGAGGTCGTCAATTTTGG
TTCACCGGTGAAGCGCAGATCAGGCTTCACGGAAGAGACTGATAATATTC
GCGACCACATGGGTTTGCAGCAACTGGCTGCAACACTTGGTGGTTCGGCA
AACTGCTGTAGTTTGGCTGATGTGGAAAGAGAATACGAAAAAATGTTGGA
GATGGCGCTACAAAGAGGCGACAAACAAAAGAAGCGTTTATTGCAAATGA
GACCATGTCTGGACTGA
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