Ggra6305.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6305.t1
Unique NameGgra6305.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:519877..520533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5037.XP_001541480.1
Max annot lvl4751|Fungi
Evalue8.28e-46
EggNOG OGs2EX6Y@1|root,2SVF8@2759|Eukaryota,38YUW@33154|Opisthokonta,3PYFN@4751|Fungi,3RHJ9@4890|Ascomycota,20ND9@147545|Eurotiomycetes
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6305Ggra6305Gracilaria gracilis GNS1m malegenetig00000879_pilon 519877..520533 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6305.t1.stop1Ggra6305.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 519877..519879 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6305.t1.CDS1Ggra6305.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 519877..520533 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6305.t1.exon1Ggra6305.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 519877..520533 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6305.t1.start1Ggra6305.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 520531..520533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6305.t1Ggra6305.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 519877..520533 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6305.t1 ID=Ggra6305.t1|Name=Ggra6305.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=219bp
MSKSILSVNKTLSLTSTAPTNSVRKAGNTANTPPILKTAFANAFRQVIET
KSDILMSIMPVHMCNIASGKKNHEYRKYRLPANIKRIWFYTSHPTSSIQY
VAQISSARTPGEVPNDGGIGNDDFNAGKKVSKNGYHIQKLWRLNTPITLQ
LGKQRGYLKSPPQKYQYATAAMLRDFDLQQEKEIINRTQSHSTKRPRPNE
NEEQPREAKTARINGNTD*
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spliced messenger RNA

>Ggra6305.t1 ID=Ggra6305.t1|Name=Ggra6305.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000879_pilon:519877..520533- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAAATCTATCCTCTCTGTGAACAAGACTCTCAGCCTTACGTCCAC
AGCACCGACCAACAGCGTTCGAAAAGCTGGCAATACCGCAAATACACCGC
CTATCCTTAAGACAGCCTTCGCCAATGCATTCCGCCAAGTTATCGAGACA
AAGTCTGATATCCTCATGAGCATCATGCCAGTACACATGTGCAACATTGC
CAGTGGCAAAAAGAACCACGAATATCGAAAGTACAGACTTCCAGCCAACA
TAAAGCGTATATGGTTCTATACATCACATCCAACGAGCAGTATTCAGTAC
GTCGCGCAGATATCTTCGGCTCGTACTCCGGGAGAGGTCCCAAATGACGG
TGGCATTGGCAATGATGATTTCAACGCCGGAAAAAAGGTCTCCAAGAATG
GGTATCATATCCAAAAACTATGGCGTCTGAACACGCCGATTACATTGCAG
CTTGGTAAGCAACGAGGTTATCTCAAATCTCCTCCGCAAAAGTACCAATA
TGCTACCGCGGCTATGTTGCGTGATTTTGATTTGCAACAGGAGAAAGAGA
TCATCAATCGCACGCAATCGCACAGTACAAAGAGGCCTCGACCGAACGAA
AATGAGGAACAGCCCAGGGAGGCGAAGACGGCGCGCATAAACGGAAACAC
AGACTAG
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protein sequence of Ggra6305.t1

>Ggra6305.t1 ID=Ggra6305.t1|Name=Ggra6305.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=219bp
MSKSILSVNKTLSLTSTAPTNSVRKAGNTANTPPILKTAFANAFRQVIET
KSDILMSIMPVHMCNIASGKKNHEYRKYRLPANIKRIWFYTSHPTSSIQY
VAQISSARTPGEVPNDGGIGNDDFNAGKKVSKNGYHIQKLWRLNTPITLQ
LGKQRGYLKSPPQKYQYATAAMLRDFDLQQEKEIINRTQSHSTKRPRPNE
NEEQPREAKTARINGNTD*
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mRNA from alignment at tig00000879_pilon:519877..520533-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6305.t1 ID=Ggra6305.t1|Name=Ggra6305.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000879_pilon:519877..520533- (Gracilaria gracilis GNS1m male)
ATGAGCAAATCTATCCTCTCTGTGAACAAGACTCTCAGCCTTACGTCCAC
AGCACCGACCAACAGCGTTCGAAAAGCTGGCAATACCGCAAATACACCGC
CTATCCTTAAGACAGCCTTCGCCAATGCATTCCGCCAAGTTATCGAGACA
AAGTCTGATATCCTCATGAGCATCATGCCAGTACACATGTGCAACATTGC
CAGTGGCAAAAAGAACCACGAATATCGAAAGTACAGACTTCCAGCCAACA
TAAAGCGTATATGGTTCTATACATCACATCCAACGAGCAGTATTCAGTAC
GTCGCGCAGATATCTTCGGCTCGTACTCCGGGAGAGGTCCCAAATGACGG
TGGCATTGGCAATGATGATTTCAACGCCGGAAAAAAGGTCTCCAAGAATG
GGTATCATATCCAAAAACTATGGCGTCTGAACACGCCGATTACATTGCAG
CTTGGTAAGCAACGAGGTTATCTCAAATCTCCTCCGCAAAAGTACCAATA
TGCTACCGCGGCTATGTTGCGTGATTTTGATTTGCAACAGGAGAAAGAGA
TCATCAATCGCACGCAATCGCACAGTACAAAGAGGCCTCGACCGAACGAA
AATGAGGAACAGCCCAGGGAGGCGAAGACGGCGCGCATAAACGGAAACAC
AGACTAG
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Coding sequence (CDS) from alignment at tig00000879_pilon:519877..520533-

>Ggra6305.t1 ID=Ggra6305.t1|Name=Ggra6305.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=657bp|location=Sequence derived from alignment at tig00000879_pilon:519877..520533- (Gracilaria gracilis GNS1m male)
ATGAGCAAATCTATCCTCTCTGTGAACAAGACTCTCAGCCTTACGTCCAC
AGCACCGACCAACAGCGTTCGAAAAGCTGGCAATACCGCAAATACACCGC
CTATCCTTAAGACAGCCTTCGCCAATGCATTCCGCCAAGTTATCGAGACA
AAGTCTGATATCCTCATGAGCATCATGCCAGTACACATGTGCAACATTGC
CAGTGGCAAAAAGAACCACGAATATCGAAAGTACAGACTTCCAGCCAACA
TAAAGCGTATATGGTTCTATACATCACATCCAACGAGCAGTATTCAGTAC
GTCGCGCAGATATCTTCGGCTCGTACTCCGGGAGAGGTCCCAAATGACGG
TGGCATTGGCAATGATGATTTCAACGCCGGAAAAAAGGTCTCCAAGAATG
GGTATCATATCCAAAAACTATGGCGTCTGAACACGCCGATTACATTGCAG
CTTGGTAAGCAACGAGGTTATCTCAAATCTCCTCCGCAAAAGTACCAATA
TGCTACCGCGGCTATGTTGCGTGATTTTGATTTGCAACAGGAGAAAGAGA
TCATCAATCGCACGCAATCGCACAGTACAAAGAGGCCTCGACCGAACGAA
AATGAGGAACAGCCCAGGGAGGCGAAGACGGCGCGCATAAACGGAAACAC
AGACTAG
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