Ggra6301.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6301.t1
Unique NameGgra6301.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length525
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:496590..498238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709000.1
PFAMsPMT,PMT_4TMC,RRM_1
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00059,RC00397
KEGG koko:K00728
KEGG ReactionR04072,R07620,R11399
KEGG Pathwayko00514,ko00515,ko01100,map00514,map00515,map01100
Evalue4.38e-107
EggNOG OGsCOG1928@1|root,KOG3359@2759|Eukaryota
EC2.4.1.109
Descriptiondolichyl-phosphate-mannose-protein mannosyltransferase activity
COG categoryO
CAZyGT39
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6301Ggra6301Gracilaria gracilis GNS1m malegenetig00000879_pilon 496590..498238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6301.t1Ggra6301.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 496590..498238 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6301.t1.start1Ggra6301.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 496590..496592 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6301.t1.CDS1Ggra6301.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 496590..496839 +
Ggra6301.t1.CDS2Ggra6301.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000879_pilon 496914..498238 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6301.t1.exon1Ggra6301.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 496590..496839 +
Ggra6301.t1.exon2Ggra6301.t1.exon2Gracilaria gracilis GNS1m maleexontig00000879_pilon 496914..498238 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6301.t1.intron1Ggra6301.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000879_pilon 496840..496913 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6301.t1.stop1Ggra6301.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 498236..498238 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6301.t1 ID=Ggra6301.t1|Name=Ggra6301.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=525bp
MRRRRIKPSRKPSTVSTSRRVYVKPSSFLAKVLHAFGIRPLGPDAPLSPD
ERKRLRTNVVVAIVLFIITFCTRFYKLAHPAKIVFDEFHFAEFIHHYVRG
EYLFDIHPPFGKLTLTAVAKLTSYNPIPFTFDHLGKPYGDLSYYPQRAFS
ATLGSMIPSVLFLTSRMLSLSMAVSVTTGAMALFDNLLCLESRLILTDAQ
LILYIQLSLLFALLMWKTPKSTPRRYIFVALTAVFGAFAVSTKWTAIVTP
GIIAVVSLTGIVFPKAPLDVIEMMLAAAIAICIYTASFWVHFYLLPNSGP
GDAFMPVAFRRTLNGSEFYDPTQESPTFGMNFRYLNWEMFRANRDITERH
PWESKWYEWLLNARGILYLDDAAPDGLREQIYLLMNPALCVVTLVGVISC
ALMVISSPWAITRLRRTQGGEKATLLRERVMQMTLFLIGWVLNLLPYMGV
KRCTFLYHVLPALQFACVLTALCLEQLPARARTASCIVITGCMAGAFYHW
RAWTYGLHRTPAALDKLRWLPRWN*
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spliced messenger RNA

>Ggra6301.t1 ID=Ggra6301.t1|Name=Ggra6301.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1575bp|location=Sequence derived from alignment at tig00000879_pilon:496590..498238+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCGTCGTAGGATCAAGCCTTCCAGGAAACCTAGCACTGTCTCCAC
ATCTCGTCGCGTCTATGTAAAGCCATCCAGCTTCCTCGCTAAGGTATTAC
ACGCATTTGGAATACGCCCTCTCGGACCAGATGCCCCTCTTTCTCCGGAT
GAAAGAAAGCGACTTCGTACCAATGTGGTGGTTGCAATTGTGTTGTTCAT
CATCACGTTTTGTACACGCTTTTACAAACTTGCGCACCCGGCCAAGATAG
TCTTCGACGAGTTTCACTTTGCTGAGTTTATACATCATTATGTTCGCGGC
GAGTATCTGTTTGACATTCATCCACCATTTGGCAAACTAACTCTAACAGC
CGTAGCGAAGCTGACTTCGTACAACCCAATCCCGTTCACGTTCGATCACC
TTGGAAAGCCGTATGGTGACTTAAGCTACTATCCCCAGCGAGCGTTTTCC
GCCACGCTTGGCTCGATGATTCCCAGTGTACTGTTCCTGACGTCTAGGAT
GCTGTCATTATCGATGGCCGTCTCGGTAACAACAGGCGCAATGGCTCTGT
TTGACAATCTGCTATGTCTCGAATCTCGGCTCATTCTCACGGATGCGCAG
CTGATTCTGTACATACAGCTTTCGTTGTTATTCGCCTTGTTAATGTGGAA
GACACCGAAGAGTACGCCGAGACGATATATTTTTGTTGCGCTAACAGCTG
TGTTTGGGGCATTTGCAGTTTCGACAAAATGGACGGCAATCGTGACACCT
GGGATAATCGCAGTAGTCTCCCTGACCGGCATCGTATTTCCAAAAGCGCC
GTTAGACGTAATAGAAATGATGCTGGCAGCAGCCATAGCCATTTGTATCT
ATACGGCTTCGTTCTGGGTTCATTTCTATCTTCTTCCAAATTCGGGACCA
GGCGACGCGTTTATGCCAGTGGCGTTCAGAAGGACTTTGAATGGAAGCGA
ATTCTACGACCCCACTCAAGAAAGTCCAACGTTCGGGATGAACTTCCGAT
ACCTGAATTGGGAAATGTTTCGAGCCAATCGAGATATCACTGAACGACAT
CCGTGGGAATCAAAATGGTATGAATGGCTCTTGAACGCGCGTGGAATTCT
GTACCTCGATGACGCAGCGCCAGATGGACTGAGGGAACAGATCTATTTGC
TAATGAACCCCGCGTTGTGTGTTGTAACGCTGGTGGGTGTGATTAGCTGC
GCGCTGATGGTGATCAGCTCTCCATGGGCAATAACAAGACTGCGTCGAAC
TCAAGGCGGCGAGAAAGCCACGCTGTTGCGCGAACGCGTGATGCAAATGA
CGCTGTTTCTGATCGGGTGGGTGTTGAATCTTCTGCCGTACATGGGAGTG
AAGCGGTGCACATTCCTTTATCACGTGCTACCGGCGTTGCAATTCGCGTG
CGTGCTGACGGCGCTGTGCCTGGAACAGCTGCCGGCGCGCGCGCGAACGG
CATCGTGCATTGTGATCACAGGCTGTATGGCAGGCGCGTTCTACCACTGG
AGGGCATGGACGTACGGTCTACACCGGACGCCAGCCGCGCTGGACAAGCT
CCGCTGGCTGCCGCGATGGAATTAA
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protein sequence of Ggra6301.t1

>Ggra6301.t1 ID=Ggra6301.t1|Name=Ggra6301.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=525bp
MRRRRIKPSRKPSTVSTSRRVYVKPSSFLAKVLHAFGIRPLGPDAPLSPD
ERKRLRTNVVVAIVLFIITFCTRFYKLAHPAKIVFDEFHFAEFIHHYVRG
EYLFDIHPPFGKLTLTAVAKLTSYNPIPFTFDHLGKPYGDLSYYPQRAFS
ATLGSMIPSVLFLTSRMLSLSMAVSVTTGAMALFDNLLCLESRLILTDAQ
LILYIQLSLLFALLMWKTPKSTPRRYIFVALTAVFGAFAVSTKWTAIVTP
GIIAVVSLTGIVFPKAPLDVIEMMLAAAIAICIYTASFWVHFYLLPNSGP
GDAFMPVAFRRTLNGSEFYDPTQESPTFGMNFRYLNWEMFRANRDITERH
PWESKWYEWLLNARGILYLDDAAPDGLREQIYLLMNPALCVVTLVGVISC
ALMVISSPWAITRLRRTQGGEKATLLRERVMQMTLFLIGWVLNLLPYMGV
KRCTFLYHVLPALQFACVLTALCLEQLPARARTASCIVITGCMAGAFYHW
RAWTYGLHRTPAALDKLRWLPRWN*
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mRNA from alignment at tig00000879_pilon:496590..498238+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6301.t1 ID=Ggra6301.t1|Name=Ggra6301.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1649bp|location=Sequence derived from alignment at tig00000879_pilon:496590..498238+ (Gracilaria gracilis GNS1m male)
ATGCGTCGTCGTAGGATCAAGCCTTCCAGGAAACCTAGCACTGTCTCCAC
ATCTCGTCGCGTCTATGTAAAGCCATCCAGCTTCCTCGCTAAGGTATTAC
ACGCATTTGGAATACGCCCTCTCGGACCAGATGCCCCTCTTTCTCCGGAT
GAAAGAAAGCGACTTCGTACCAATGTGGTGGTTGCAATTGTGTTGTTCAT
CATCACGTTTTGTACACGCTTTTACAAACTTGCGCACCCGGCCAAGATAG
GTATGTTATGGTTATCTTCTTTATGAGCACGTGCGTTTTAGGACGCCAGT
GACTAACGCCTTGTCGCACGGCAGTCTTCGACGAGTTTCACTTTGCTGAG
TTTATACATCATTATGTTCGCGGCGAGTATCTGTTTGACATTCATCCACC
ATTTGGCAAACTAACTCTAACAGCCGTAGCGAAGCTGACTTCGTACAACC
CAATCCCGTTCACGTTCGATCACCTTGGAAAGCCGTATGGTGACTTAAGC
TACTATCCCCAGCGAGCGTTTTCCGCCACGCTTGGCTCGATGATTCCCAG
TGTACTGTTCCTGACGTCTAGGATGCTGTCATTATCGATGGCCGTCTCGG
TAACAACAGGCGCAATGGCTCTGTTTGACAATCTGCTATGTCTCGAATCT
CGGCTCATTCTCACGGATGCGCAGCTGATTCTGTACATACAGCTTTCGTT
GTTATTCGCCTTGTTAATGTGGAAGACACCGAAGAGTACGCCGAGACGAT
ATATTTTTGTTGCGCTAACAGCTGTGTTTGGGGCATTTGCAGTTTCGACA
AAATGGACGGCAATCGTGACACCTGGGATAATCGCAGTAGTCTCCCTGAC
CGGCATCGTATTTCCAAAAGCGCCGTTAGACGTAATAGAAATGATGCTGG
CAGCAGCCATAGCCATTTGTATCTATACGGCTTCGTTCTGGGTTCATTTC
TATCTTCTTCCAAATTCGGGACCAGGCGACGCGTTTATGCCAGTGGCGTT
CAGAAGGACTTTGAATGGAAGCGAATTCTACGACCCCACTCAAGAAAGTC
CAACGTTCGGGATGAACTTCCGATACCTGAATTGGGAAATGTTTCGAGCC
AATCGAGATATCACTGAACGACATCCGTGGGAATCAAAATGGTATGAATG
GCTCTTGAACGCGCGTGGAATTCTGTACCTCGATGACGCAGCGCCAGATG
GACTGAGGGAACAGATCTATTTGCTAATGAACCCCGCGTTGTGTGTTGTA
ACGCTGGTGGGTGTGATTAGCTGCGCGCTGATGGTGATCAGCTCTCCATG
GGCAATAACAAGACTGCGTCGAACTCAAGGCGGCGAGAAAGCCACGCTGT
TGCGCGAACGCGTGATGCAAATGACGCTGTTTCTGATCGGGTGGGTGTTG
AATCTTCTGCCGTACATGGGAGTGAAGCGGTGCACATTCCTTTATCACGT
GCTACCGGCGTTGCAATTCGCGTGCGTGCTGACGGCGCTGTGCCTGGAAC
AGCTGCCGGCGCGCGCGCGAACGGCATCGTGCATTGTGATCACAGGCTGT
ATGGCAGGCGCGTTCTACCACTGGAGGGCATGGACGTACGGTCTACACCG
GACGCCAGCCGCGCTGGACAAGCTCCGCTGGCTGCCGCGATGGAATTAA
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Coding sequence (CDS) from alignment at tig00000879_pilon:496590..498238+

>Ggra6301.t1 ID=Ggra6301.t1|Name=Ggra6301.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1575bp|location=Sequence derived from alignment at tig00000879_pilon:496590..498238+ (Gracilaria gracilis GNS1m male)
ATGCGTCGTCGTAGGATCAAGCCTTCCAGGAAACCTAGCACTGTCTCCAC
ATCTCGTCGCGTCTATGTAAAGCCATCCAGCTTCCTCGCTAAGGTATTAC
ACGCATTTGGAATACGCCCTCTCGGACCAGATGCCCCTCTTTCTCCGGAT
GAAAGAAAGCGACTTCGTACCAATGTGGTGGTTGCAATTGTGTTGTTCAT
CATCACGTTTTGTACACGCTTTTACAAACTTGCGCACCCGGCCAAGATAG
TCTTCGACGAGTTTCACTTTGCTGAGTTTATACATCATTATGTTCGCGGC
GAGTATCTGTTTGACATTCATCCACCATTTGGCAAACTAACTCTAACAGC
CGTAGCGAAGCTGACTTCGTACAACCCAATCCCGTTCACGTTCGATCACC
TTGGAAAGCCGTATGGTGACTTAAGCTACTATCCCCAGCGAGCGTTTTCC
GCCACGCTTGGCTCGATGATTCCCAGTGTACTGTTCCTGACGTCTAGGAT
GCTGTCATTATCGATGGCCGTCTCGGTAACAACAGGCGCAATGGCTCTGT
TTGACAATCTGCTATGTCTCGAATCTCGGCTCATTCTCACGGATGCGCAG
CTGATTCTGTACATACAGCTTTCGTTGTTATTCGCCTTGTTAATGTGGAA
GACACCGAAGAGTACGCCGAGACGATATATTTTTGTTGCGCTAACAGCTG
TGTTTGGGGCATTTGCAGTTTCGACAAAATGGACGGCAATCGTGACACCT
GGGATAATCGCAGTAGTCTCCCTGACCGGCATCGTATTTCCAAAAGCGCC
GTTAGACGTAATAGAAATGATGCTGGCAGCAGCCATAGCCATTTGTATCT
ATACGGCTTCGTTCTGGGTTCATTTCTATCTTCTTCCAAATTCGGGACCA
GGCGACGCGTTTATGCCAGTGGCGTTCAGAAGGACTTTGAATGGAAGCGA
ATTCTACGACCCCACTCAAGAAAGTCCAACGTTCGGGATGAACTTCCGAT
ACCTGAATTGGGAAATGTTTCGAGCCAATCGAGATATCACTGAACGACAT
CCGTGGGAATCAAAATGGTATGAATGGCTCTTGAACGCGCGTGGAATTCT
GTACCTCGATGACGCAGCGCCAGATGGACTGAGGGAACAGATCTATTTGC
TAATGAACCCCGCGTTGTGTGTTGTAACGCTGGTGGGTGTGATTAGCTGC
GCGCTGATGGTGATCAGCTCTCCATGGGCAATAACAAGACTGCGTCGAAC
TCAAGGCGGCGAGAAAGCCACGCTGTTGCGCGAACGCGTGATGCAAATGA
CGCTGTTTCTGATCGGGTGGGTGTTGAATCTTCTGCCGTACATGGGAGTG
AAGCGGTGCACATTCCTTTATCACGTGCTACCGGCGTTGCAATTCGCGTG
CGTGCTGACGGCGCTGTGCCTGGAACAGCTGCCGGCGCGCGCGCGAACGG
CATCGTGCATTGTGATCACAGGCTGTATGGCAGGCGCGTTCTACCACTGG
AGGGCATGGACGTACGGTCTACACCGGACGCCAGCCGCGCTGGACAAGCT
CCGCTGGCTGCCGCGATGGAATTAA
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