Ggra6298.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6298.t1
Unique NameGgra6298.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length497
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:485509..486999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708044.1
PFAMsGlyco_transf_8,Mannosyl_trans3
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00171
KEGG koko:K00750
KEGG ReactionR00292,R03681
KEGG Pathwayko00500,ko01100,map00500,map01100
GOsGO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0008194,GO:0008466,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0035251,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046527,GO:0055114,GO:0071704,GO:1901576
Evalue2.53e-85
EggNOG OGsCOG5597@1|root,KOG1950@2759|Eukaryota
EC2.4.1.186
Descriptionglycogenin glucosyltransferase activity
COG categoryM
CAZyGT8
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6298Ggra6298Gracilaria gracilis GNS1m malegenetig00000879_pilon 485509..486999 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6298.t1.stop1Ggra6298.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 485509..485511 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6298.t1.CDS1Ggra6298.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 485509..486999 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6298.t1.exon1Ggra6298.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 485509..486999 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6298.t1.start1Ggra6298.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 486997..486999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6298.t1Ggra6298.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 485509..486999 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6298.t1 ID=Ggra6298.t1|Name=Ggra6298.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=497bp
MRCNVGLNTLLALLLFVTVVSSTDDHVGPQREAYVSLLYGNTYTLAVRVM
MHSLLVNSPDSRSTRERIVLQTGDTSQANIDLLEDDGIRVVRVPTVSSPY
VGSAKFHPRFGLVMTKLVVFNMTDYSRMLFIDADSLVLKDLSPLFSCARF
CATFINPCYFNSGLMLVTPNATMYNDMARVLPHTSSYDGGDQGFLNSYFP
EMLQAPLFHPDKPMTNESFARFPFSFHTDHSAYYNRLSFTFQKNPGCGPA
RDVEWLGPPFMKPWIWWGYTIFDLSWVWYEYRRQVENGFATDVHMNAFMV
ASATAAYIWLLNLYTRFESSPWTLRALKAISRLSFYRFSSRTNAFYLSLI
GFLIWGFTVFISIHVIPTTMPPVQAFFSFAHVRAVFNSVVLLFIGSLCLA
QASSTPFENKPEYNTTTLAGCVKKIVFWSFADALYLVFWDFIMWKINFSS
IWSRIVFLVVIVASQLLFTFIMLLNVAKTCISIVQDCDSHRGSNLS*
back to top

spliced messenger RNA

>Ggra6298.t1 ID=Ggra6298.t1|Name=Ggra6298.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1491bp|location=Sequence derived from alignment at tig00000879_pilon:485509..486999- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTGCAACGTTGGGTTGAACACGTTGCTCGCCCTTCTCCTTTTCGT
CACGGTTGTTTCTAGCACTGATGATCACGTCGGGCCCCAACGTGAGGCCT
ACGTGAGTCTCCTGTATGGTAACACTTATACGTTAGCTGTCCGGGTCATG
ATGCATTCCTTGCTCGTCAACAGCCCGGACTCTCGAAGCACCAGGGAGCG
GATAGTGCTTCAGACCGGAGACACTTCACAGGCCAACATCGATCTTCTTG
AGGACGATGGTATTCGTGTCGTTCGTGTTCCGACCGTAAGTTCTCCGTAT
GTTGGGTCCGCAAAGTTTCATCCCAGGTTCGGTCTGGTCATGACAAAGCT
AGTCGTTTTCAACATGACCGACTACAGCCGCATGCTTTTCATCGATGCCG
ACTCGCTTGTCCTAAAGGATTTATCGCCCCTGTTTTCATGCGCTCGCTTC
TGTGCTACATTCATTAACCCGTGTTACTTCAATAGTGGGCTCATGCTTGT
TACCCCTAACGCTACTATGTACAACGATATGGCACGTGTTTTGCCTCATA
CGTCATCGTATGACGGTGGTGATCAGGGTTTTCTCAACTCGTACTTTCCA
GAAATGCTGCAAGCTCCACTCTTCCACCCTGACAAGCCTATGACAAACGA
GTCATTTGCCAGATTCCCCTTTTCGTTTCATACAGATCATAGCGCATACT
ACAACAGACTATCTTTTACGTTTCAAAAGAACCCAGGGTGCGGTCCAGCG
CGAGATGTTGAGTGGTTGGGGCCGCCATTCATGAAACCATGGATATGGTG
GGGCTATACCATTTTCGATCTCAGCTGGGTATGGTATGAGTATCGTCGAC
AAGTCGAGAATGGCTTTGCTACCGATGTGCACATGAATGCGTTTATGGTG
GCTTCTGCAACGGCTGCATACATATGGCTCTTGAATTTGTACACTCGGTT
TGAATCTTCGCCATGGACGTTGAGAGCGCTTAAGGCCATTTCACGACTGT
CGTTCTACAGGTTTTCGTCAAGGACAAATGCTTTTTACTTGTCTCTGATC
GGTTTTCTAATTTGGGGTTTCACAGTGTTTATATCTATTCATGTCATTCC
AACGACAATGCCGCCTGTACAAGCTTTCTTTTCGTTCGCCCATGTTCGAG
CGGTATTCAACTCTGTGGTATTGCTTTTCATCGGGTCCCTATGCCTTGCA
CAGGCATCTTCGACACCTTTTGAGAATAAGCCAGAGTATAACACCACAAC
GCTCGCAGGCTGTGTGAAGAAGATTGTCTTCTGGTCTTTTGCTGACGCAT
TGTATCTTGTTTTCTGGGATTTCATCATGTGGAAAATCAATTTCTCGTCA
ATCTGGAGTCGTATCGTATTCCTCGTAGTCATCGTCGCCTCACAGTTACT
CTTCACCTTTATTATGCTCCTGAATGTTGCAAAGACGTGTATATCTATAG
TTCAGGACTGCGACTCCCACCGTGGTTCAAACTTGTCCTGA
back to top

protein sequence of Ggra6298.t1

>Ggra6298.t1 ID=Ggra6298.t1|Name=Ggra6298.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=497bp
MRCNVGLNTLLALLLFVTVVSSTDDHVGPQREAYVSLLYGNTYTLAVRVM
MHSLLVNSPDSRSTRERIVLQTGDTSQANIDLLEDDGIRVVRVPTVSSPY
VGSAKFHPRFGLVMTKLVVFNMTDYSRMLFIDADSLVLKDLSPLFSCARF
CATFINPCYFNSGLMLVTPNATMYNDMARVLPHTSSYDGGDQGFLNSYFP
EMLQAPLFHPDKPMTNESFARFPFSFHTDHSAYYNRLSFTFQKNPGCGPA
RDVEWLGPPFMKPWIWWGYTIFDLSWVWYEYRRQVENGFATDVHMNAFMV
ASATAAYIWLLNLYTRFESSPWTLRALKAISRLSFYRFSSRTNAFYLSLI
GFLIWGFTVFISIHVIPTTMPPVQAFFSFAHVRAVFNSVVLLFIGSLCLA
QASSTPFENKPEYNTTTLAGCVKKIVFWSFADALYLVFWDFIMWKINFSS
IWSRIVFLVVIVASQLLFTFIMLLNVAKTCISIVQDCDSHRGSNLS*
back to top

mRNA from alignment at tig00000879_pilon:485509..486999-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6298.t1 ID=Ggra6298.t1|Name=Ggra6298.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1491bp|location=Sequence derived from alignment at tig00000879_pilon:485509..486999- (Gracilaria gracilis GNS1m male)
ATGCGCTGCAACGTTGGGTTGAACACGTTGCTCGCCCTTCTCCTTTTCGT
CACGGTTGTTTCTAGCACTGATGATCACGTCGGGCCCCAACGTGAGGCCT
ACGTGAGTCTCCTGTATGGTAACACTTATACGTTAGCTGTCCGGGTCATG
ATGCATTCCTTGCTCGTCAACAGCCCGGACTCTCGAAGCACCAGGGAGCG
GATAGTGCTTCAGACCGGAGACACTTCACAGGCCAACATCGATCTTCTTG
AGGACGATGGTATTCGTGTCGTTCGTGTTCCGACCGTAAGTTCTCCGTAT
GTTGGGTCCGCAAAGTTTCATCCCAGGTTCGGTCTGGTCATGACAAAGCT
AGTCGTTTTCAACATGACCGACTACAGCCGCATGCTTTTCATCGATGCCG
ACTCGCTTGTCCTAAAGGATTTATCGCCCCTGTTTTCATGCGCTCGCTTC
TGTGCTACATTCATTAACCCGTGTTACTTCAATAGTGGGCTCATGCTTGT
TACCCCTAACGCTACTATGTACAACGATATGGCACGTGTTTTGCCTCATA
CGTCATCGTATGACGGTGGTGATCAGGGTTTTCTCAACTCGTACTTTCCA
GAAATGCTGCAAGCTCCACTCTTCCACCCTGACAAGCCTATGACAAACGA
GTCATTTGCCAGATTCCCCTTTTCGTTTCATACAGATCATAGCGCATACT
ACAACAGACTATCTTTTACGTTTCAAAAGAACCCAGGGTGCGGTCCAGCG
CGAGATGTTGAGTGGTTGGGGCCGCCATTCATGAAACCATGGATATGGTG
GGGCTATACCATTTTCGATCTCAGCTGGGTATGGTATGAGTATCGTCGAC
AAGTCGAGAATGGCTTTGCTACCGATGTGCACATGAATGCGTTTATGGTG
GCTTCTGCAACGGCTGCATACATATGGCTCTTGAATTTGTACACTCGGTT
TGAATCTTCGCCATGGACGTTGAGAGCGCTTAAGGCCATTTCACGACTGT
CGTTCTACAGGTTTTCGTCAAGGACAAATGCTTTTTACTTGTCTCTGATC
GGTTTTCTAATTTGGGGTTTCACAGTGTTTATATCTATTCATGTCATTCC
AACGACAATGCCGCCTGTACAAGCTTTCTTTTCGTTCGCCCATGTTCGAG
CGGTATTCAACTCTGTGGTATTGCTTTTCATCGGGTCCCTATGCCTTGCA
CAGGCATCTTCGACACCTTTTGAGAATAAGCCAGAGTATAACACCACAAC
GCTCGCAGGCTGTGTGAAGAAGATTGTCTTCTGGTCTTTTGCTGACGCAT
TGTATCTTGTTTTCTGGGATTTCATCATGTGGAAAATCAATTTCTCGTCA
ATCTGGAGTCGTATCGTATTCCTCGTAGTCATCGTCGCCTCACAGTTACT
CTTCACCTTTATTATGCTCCTGAATGTTGCAAAGACGTGTATATCTATAG
TTCAGGACTGCGACTCCCACCGTGGTTCAAACTTGTCCTGA
back to top

Coding sequence (CDS) from alignment at tig00000879_pilon:485509..486999-

>Ggra6298.t1 ID=Ggra6298.t1|Name=Ggra6298.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1491bp|location=Sequence derived from alignment at tig00000879_pilon:485509..486999- (Gracilaria gracilis GNS1m male)
ATGCGCTGCAACGTTGGGTTGAACACGTTGCTCGCCCTTCTCCTTTTCGT
CACGGTTGTTTCTAGCACTGATGATCACGTCGGGCCCCAACGTGAGGCCT
ACGTGAGTCTCCTGTATGGTAACACTTATACGTTAGCTGTCCGGGTCATG
ATGCATTCCTTGCTCGTCAACAGCCCGGACTCTCGAAGCACCAGGGAGCG
GATAGTGCTTCAGACCGGAGACACTTCACAGGCCAACATCGATCTTCTTG
AGGACGATGGTATTCGTGTCGTTCGTGTTCCGACCGTAAGTTCTCCGTAT
GTTGGGTCCGCAAAGTTTCATCCCAGGTTCGGTCTGGTCATGACAAAGCT
AGTCGTTTTCAACATGACCGACTACAGCCGCATGCTTTTCATCGATGCCG
ACTCGCTTGTCCTAAAGGATTTATCGCCCCTGTTTTCATGCGCTCGCTTC
TGTGCTACATTCATTAACCCGTGTTACTTCAATAGTGGGCTCATGCTTGT
TACCCCTAACGCTACTATGTACAACGATATGGCACGTGTTTTGCCTCATA
CGTCATCGTATGACGGTGGTGATCAGGGTTTTCTCAACTCGTACTTTCCA
GAAATGCTGCAAGCTCCACTCTTCCACCCTGACAAGCCTATGACAAACGA
GTCATTTGCCAGATTCCCCTTTTCGTTTCATACAGATCATAGCGCATACT
ACAACAGACTATCTTTTACGTTTCAAAAGAACCCAGGGTGCGGTCCAGCG
CGAGATGTTGAGTGGTTGGGGCCGCCATTCATGAAACCATGGATATGGTG
GGGCTATACCATTTTCGATCTCAGCTGGGTATGGTATGAGTATCGTCGAC
AAGTCGAGAATGGCTTTGCTACCGATGTGCACATGAATGCGTTTATGGTG
GCTTCTGCAACGGCTGCATACATATGGCTCTTGAATTTGTACACTCGGTT
TGAATCTTCGCCATGGACGTTGAGAGCGCTTAAGGCCATTTCACGACTGT
CGTTCTACAGGTTTTCGTCAAGGACAAATGCTTTTTACTTGTCTCTGATC
GGTTTTCTAATTTGGGGTTTCACAGTGTTTATATCTATTCATGTCATTCC
AACGACAATGCCGCCTGTACAAGCTTTCTTTTCGTTCGCCCATGTTCGAG
CGGTATTCAACTCTGTGGTATTGCTTTTCATCGGGTCCCTATGCCTTGCA
CAGGCATCTTCGACACCTTTTGAGAATAAGCCAGAGTATAACACCACAAC
GCTCGCAGGCTGTGTGAAGAAGATTGTCTTCTGGTCTTTTGCTGACGCAT
TGTATCTTGTTTTCTGGGATTTCATCATGTGGAAAATCAATTTCTCGTCA
ATCTGGAGTCGTATCGTATTCCTCGTAGTCATCGTCGCCTCACAGTTACT
CTTCACCTTTATTATGCTCCTGAATGTTGCAAAGACGTGTATATCTATAG
TTCAGGACTGCGACTCCCACCGTGGTTCAAACTTGTCCTGA
back to top