Ggra629.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra629.t1
Unique NameGgra629.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length241
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000895_piloncontigtig00000895_pilon:154819..155541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra629Ggra629Gracilaria gracilis GNS1m malegenetig00000895_pilon 154819..155541 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra629.t1.start1Ggra629.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000895_pilon 154819..154821 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra629.t1.CDS1Ggra629.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000895_pilon 154819..155541 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra629.t1.exon1Ggra629.t1.exon1Gracilaria gracilis GNS1m maleexontig00000895_pilon 154819..155541 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra629.t1.stop1Ggra629.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000895_pilon 155539..155541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra629.t1Ggra629.t1Gracilaria gracilis GNS1m malepolypeptidetig00000895_pilon 154819..155541 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra629.t1 ID=Ggra629.t1|Name=Ggra629.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=241bp
MAVLPSITSNWTINADLNHSHDSKTFSEREVLERYNALKRNMSERMREWK
ASHPDTPMKFWESLKRKCVPDKTGTPKVLGCGPSYTIFEDGVRVQFQTDW
GSAGLLHTPFLTSSGGRQGVRTPPLPHGPVADPSDARGIAAPVGTRGVLH
VAGESDVDVISASKEAYESVEEGYVGSDVTITHENSTYIEAVERVINKES
YVMGDVKIGSDAVSGVETGTGDGEARTNTTSDVKDGPCTK*
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spliced messenger RNA

>Ggra629.t1 ID=Ggra629.t1|Name=Ggra629.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00000895_pilon:154819..155541+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGTTCTTCCAAGTATTACCTCCAATTGGACCATTAATGCTGATCT
CAATCATTCTCACGACTCGAAAACCTTCTCGGAACGTGAGGTGTTGGAAC
GGTATAATGCGCTTAAAAGAAACATGTCAGAGCGCATGAGGGAGTGGAAA
GCATCTCATCCAGATACGCCGATGAAGTTTTGGGAATCATTGAAGAGAAA
GTGTGTACCTGACAAGACGGGAACGCCAAAGGTTCTTGGTTGTGGCCCGA
GCTATACAATATTTGAGGACGGAGTTCGTGTTCAATTTCAAACAGATTGG
GGATCGGCTGGGCTCCTTCATACTCCTTTCTTGACATCTTCAGGAGGTCG
ACAGGGAGTGAGGACTCCTCCATTGCCACATGGACCCGTCGCAGATCCTT
CTGATGCTCGCGGAATTGCAGCTCCAGTGGGAACTCGCGGTGTTCTGCAT
GTGGCGGGCGAAAGTGACGTCGATGTTATTAGCGCATCGAAGGAAGCCTA
TGAAAGTGTGGAAGAGGGTTACGTTGGGAGTGACGTAACAATTACTCACG
AGAATTCTACCTACATAGAAGCTGTTGAGAGGGTTATAAATAAAGAGAGC
TACGTCATGGGTGACGTAAAGATCGGAAGTGACGCCGTTTCCGGCGTAGA
AACTGGCACGGGTGACGGGGAGGCTAGAACGAACACCACCTCTGACGTGA
AGGATGGCCCCTGCACCAAATAG
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protein sequence of Ggra629.t1

>Ggra629.t1 ID=Ggra629.t1|Name=Ggra629.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=241bp
MAVLPSITSNWTINADLNHSHDSKTFSEREVLERYNALKRNMSERMREWK
ASHPDTPMKFWESLKRKCVPDKTGTPKVLGCGPSYTIFEDGVRVQFQTDW
GSAGLLHTPFLTSSGGRQGVRTPPLPHGPVADPSDARGIAAPVGTRGVLH
VAGESDVDVISASKEAYESVEEGYVGSDVTITHENSTYIEAVERVINKES
YVMGDVKIGSDAVSGVETGTGDGEARTNTTSDVKDGPCTK*
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mRNA from alignment at tig00000895_pilon:154819..155541+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra629.t1 ID=Ggra629.t1|Name=Ggra629.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00000895_pilon:154819..155541+ (Gracilaria gracilis GNS1m male)
ATGGCAGTTCTTCCAAGTATTACCTCCAATTGGACCATTAATGCTGATCT
CAATCATTCTCACGACTCGAAAACCTTCTCGGAACGTGAGGTGTTGGAAC
GGTATAATGCGCTTAAAAGAAACATGTCAGAGCGCATGAGGGAGTGGAAA
GCATCTCATCCAGATACGCCGATGAAGTTTTGGGAATCATTGAAGAGAAA
GTGTGTACCTGACAAGACGGGAACGCCAAAGGTTCTTGGTTGTGGCCCGA
GCTATACAATATTTGAGGACGGAGTTCGTGTTCAATTTCAAACAGATTGG
GGATCGGCTGGGCTCCTTCATACTCCTTTCTTGACATCTTCAGGAGGTCG
ACAGGGAGTGAGGACTCCTCCATTGCCACATGGACCCGTCGCAGATCCTT
CTGATGCTCGCGGAATTGCAGCTCCAGTGGGAACTCGCGGTGTTCTGCAT
GTGGCGGGCGAAAGTGACGTCGATGTTATTAGCGCATCGAAGGAAGCCTA
TGAAAGTGTGGAAGAGGGTTACGTTGGGAGTGACGTAACAATTACTCACG
AGAATTCTACCTACATAGAAGCTGTTGAGAGGGTTATAAATAAAGAGAGC
TACGTCATGGGTGACGTAAAGATCGGAAGTGACGCCGTTTCCGGCGTAGA
AACTGGCACGGGTGACGGGGAGGCTAGAACGAACACCACCTCTGACGTGA
AGGATGGCCCCTGCACCAAATAG
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Coding sequence (CDS) from alignment at tig00000895_pilon:154819..155541+

>Ggra629.t1 ID=Ggra629.t1|Name=Ggra629.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=723bp|location=Sequence derived from alignment at tig00000895_pilon:154819..155541+ (Gracilaria gracilis GNS1m male)
ATGGCAGTTCTTCCAAGTATTACCTCCAATTGGACCATTAATGCTGATCT
CAATCATTCTCACGACTCGAAAACCTTCTCGGAACGTGAGGTGTTGGAAC
GGTATAATGCGCTTAAAAGAAACATGTCAGAGCGCATGAGGGAGTGGAAA
GCATCTCATCCAGATACGCCGATGAAGTTTTGGGAATCATTGAAGAGAAA
GTGTGTACCTGACAAGACGGGAACGCCAAAGGTTCTTGGTTGTGGCCCGA
GCTATACAATATTTGAGGACGGAGTTCGTGTTCAATTTCAAACAGATTGG
GGATCGGCTGGGCTCCTTCATACTCCTTTCTTGACATCTTCAGGAGGTCG
ACAGGGAGTGAGGACTCCTCCATTGCCACATGGACCCGTCGCAGATCCTT
CTGATGCTCGCGGAATTGCAGCTCCAGTGGGAACTCGCGGTGTTCTGCAT
GTGGCGGGCGAAAGTGACGTCGATGTTATTAGCGCATCGAAGGAAGCCTA
TGAAAGTGTGGAAGAGGGTTACGTTGGGAGTGACGTAACAATTACTCACG
AGAATTCTACCTACATAGAAGCTGTTGAGAGGGTTATAAATAAAGAGAGC
TACGTCATGGGTGACGTAAAGATCGGAAGTGACGCCGTTTCCGGCGTAGA
AACTGGCACGGGTGACGGGGAGGCTAGAACGAACACCACCTCTGACGTGA
AGGATGGCCCCTGCACCAAATAG
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