Ggra6289.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6289.t1
Unique Name	Ggra6289.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	698

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000879_pilon	contig	tig00000879_pilon:428393..430486 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	643473.KB235930_gene579
Preferred name	uvrC
PFAMs	GIY-YIG,HHH_2,HHH_5,UVR,UvrC_HhH_N
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K03703
KEGG Pathway	ko03420,map03420
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0006950,GO:0006974,GO:0008150,GO:0009380,GO:0009987,GO:0032991,GO:0033554,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:1902494,GO:1905347,GO:1905348,GO:1990391
Evalue	2.9e-145
EggNOG OGs	COG0322@1\|root,COG0322@2\|Bacteria,1G0NS@1117\|Cyanobacteria,1HIBX@1161\|Nostocales
Description	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
COG category	L
BRITE	ko00000,ko00001,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6289	Ggra6289	Gracilaria gracilis GNS1m male	gene	tig00000879_pilon 428393..430486 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6289.t1.stop1	Ggra6289.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000879_pilon 428393..428395 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6289.t1.CDS1	Ggra6289.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000879_pilon 428393..430486 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6289.t1.exon1	Ggra6289.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000879_pilon 428393..430486 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6289.t1.start1	Ggra6289.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000879_pilon 430484..430486 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6289.t1	Ggra6289.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000879_pilon 428393..430486 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000879_pilon:428393..430486-
coding sequence from alignment at tig00000879_pilon:428393..430486-

mRNA sequence

>Ggra6289.t1 ID=Ggra6289.t1|Name=Ggra6289.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=698bp
MLTFLVHALPRNPLRHGGVPHSTRVRCCAVSSSGAHSLSHALAAAPSQPG
VYRFLDHANRALYVGKARRLRTRLRQYLTVSPHAPSGVAPARGLSPRIHA
MLAAAASLDFIITDTEAAALALEASIVHESQPFYNVLLKDDRRHPYVLIT
LSETYPRITITRSRNKPDERDVIYGPFVNENVLRKLLTVIHATFPLRQRR
NKLFSDRPCINYDLGRCPGVCQQLVTPLDYRKTIDYVHKLFSGRITEVIK
HLRVDMSRHSSLLQYEQAAIIRDRIASLENAFGDAMGLHGAFEDLQHASA
IISPNSSSSRDVFAISTNHTVGKIVLFQVRSGKLISRLVFTVDATAEHAQ
LLNAVLTAHYARLSHAMEIPEELVLCTPTADKAMLQAALSEKRGKKVVVK
GKKGVALADIAQRNADMEVNIETGRIHDAAKDLSALEHLIKPYLHSFKVC
HSAAGPSEQDPSQHHTVLKRIECFDVSHTSGSNAVGSMAVFLNGSPCLSE
YRRYNLGPQSSYQGHPDDYASLYETLTRRFERFVSKPDNGTHPSLPQLVV
IDGGKGQLSSAVQALRTLGLHGKVPVISIAKAEEAVFVDGKRQAINYDVG
SGAHVMCDGVRLVCRLRDEAHRTALMAHRRRRGKQALKSGLDSVSGLGPR
KRAALLEHFNGSVEAIANAMPDQLSQAPGIGPALADRLYSHFRDSAT*

spliced messenger RNA

>Ggra6289.t1 ID=Ggra6289.t1|Name=Ggra6289.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2094bp|location=Sequence derived from alignment at tig00000879_pilon:428393..430486- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGACCTTCCTCGTCCACGCTCTGCCCCGCAACCCGCTGCGCCACGG
CGGCGTGCCGCACTCCACGCGCGTGCGATGCTGCGCCGTTTCATCAAGCG
GCGCCCATTCGCTGTCGCACGCGCTGGCAGCCGCGCCGTCGCAGCCCGGC
GTGTACCGCTTTCTGGACCACGCCAACCGCGCGCTGTACGTCGGCAAGGC
GCGCCGATTGCGAACGCGCCTGCGACAGTACCTCACCGTGTCGCCGCACG
CGCCTTCGGGCGTCGCGCCGGCGCGTGGCCTCTCGCCGCGCATTCACGCC
ATGCTGGCCGCTGCCGCTTCGCTCGACTTTATCATCACCGATACGGAGGC
GGCCGCGCTGGCGTTGGAGGCGTCCATTGTTCATGAGAGTCAGCCGTTTT
ATAACGTTTTGCTCAAGGATGATCGCCGCCATCCGTACGTGTTGATCACG
CTTTCGGAGACGTATCCGCGCATCACCATCACCAGGAGTAGGAACAAGCC
CGATGAGCGCGATGTGATATACGGACCTTTTGTTAATGAGAACGTGTTGC
GCAAGCTGCTCACCGTCATACACGCAACGTTTCCACTTCGACAACGGCGC
AACAAACTCTTCTCGGACCGCCCGTGCATCAACTATGACCTGGGCAGATG
CCCTGGCGTCTGTCAACAACTCGTGACGCCGCTGGATTACAGAAAGACAA
TTGATTACGTTCACAAGTTGTTCTCTGGTCGTATAACGGAGGTCATCAAG
CACTTACGTGTAGACATGTCACGTCATTCCTCGTTGCTGCAGTACGAGCA
GGCTGCAATCATTCGTGATCGAATTGCCAGTCTTGAAAATGCTTTCGGCG
ATGCGATGGGTCTTCACGGTGCTTTTGAAGATCTACAGCACGCGTCTGCC
ATTATTTCGCCAAACTCATCAAGCTCGCGCGATGTCTTTGCCATTTCTAC
AAACCACACCGTCGGCAAAATTGTTCTCTTCCAAGTCAGAAGCGGCAAAC
TGATTTCAAGACTTGTCTTCACTGTAGATGCGACCGCTGAACACGCACAG
TTGCTCAATGCGGTGCTGACGGCCCACTACGCCCGCCTCTCACATGCGAT
GGAGATTCCTGAAGAGCTTGTGCTTTGCACCCCGACTGCAGACAAGGCAA
TGTTGCAAGCAGCACTAAGCGAGAAAAGAGGCAAGAAGGTCGTTGTCAAA
GGTAAGAAGGGAGTGGCTTTGGCAGACATTGCTCAAAGAAACGCAGATAT
GGAGGTAAACATTGAAACAGGCCGAATCCATGACGCAGCAAAAGACCTCA
GCGCTCTTGAGCACTTGATTAAACCATACCTGCACTCATTCAAAGTATGC
CATAGTGCTGCCGGCCCATCAGAACAAGACCCTTCGCAACACCATACGGT
CTTGAAGAGAATAGAATGCTTTGATGTATCCCACACCAGCGGATCGAATG
CTGTAGGGTCAATGGCAGTGTTTCTAAACGGTTCTCCGTGTTTGTCAGAG
TATCGAAGGTACAATCTTGGACCACAGAGTTCGTACCAAGGCCACCCCGA
TGACTACGCATCCTTGTACGAAACACTCACCAGAAGATTCGAACGTTTCG
TGAGCAAACCTGACAACGGTACACATCCATCTCTCCCACAACTGGTTGTC
ATTGATGGGGGCAAAGGTCAACTCAGTTCTGCTGTGCAAGCTTTGCGGAC
ACTCGGCCTACATGGAAAAGTGCCTGTGATTAGTATCGCCAAGGCGGAGG
AGGCCGTGTTTGTGGATGGCAAAAGACAAGCGATCAATTACGATGTTGGT
TCCGGAGCACATGTCATGTGCGATGGAGTTCGTCTTGTTTGTCGGTTGAG
AGACGAAGCTCACCGAACAGCTTTGATGGCGCACAGGAGAAGAAGAGGAA
AGCAGGCTTTGAAATCCGGCCTTGATTCAGTTTCCGGTCTCGGTCCGCGG
AAACGGGCTGCACTCTTGGAACATTTCAATGGAAGCGTTGAAGCAATCGC
CAATGCCATGCCGGATCAGCTATCACAGGCCCCTGGTATAGGGCCTGCTC
TTGCAGATAGGTTATACTCCCACTTTCGTGACAGCGCAACATGA

protein sequence of Ggra6289.t1

>Ggra6289.t1 ID=Ggra6289.t1|Name=Ggra6289.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=698bp
MLTFLVHALPRNPLRHGGVPHSTRVRCCAVSSSGAHSLSHALAAAPSQPG
VYRFLDHANRALYVGKARRLRTRLRQYLTVSPHAPSGVAPARGLSPRIHA
MLAAAASLDFIITDTEAAALALEASIVHESQPFYNVLLKDDRRHPYVLIT
LSETYPRITITRSRNKPDERDVIYGPFVNENVLRKLLTVIHATFPLRQRR
NKLFSDRPCINYDLGRCPGVCQQLVTPLDYRKTIDYVHKLFSGRITEVIK
HLRVDMSRHSSLLQYEQAAIIRDRIASLENAFGDAMGLHGAFEDLQHASA
IISPNSSSSRDVFAISTNHTVGKIVLFQVRSGKLISRLVFTVDATAEHAQ
LLNAVLTAHYARLSHAMEIPEELVLCTPTADKAMLQAALSEKRGKKVVVK
GKKGVALADIAQRNADMEVNIETGRIHDAAKDLSALEHLIKPYLHSFKVC
HSAAGPSEQDPSQHHTVLKRIECFDVSHTSGSNAVGSMAVFLNGSPCLSE
YRRYNLGPQSSYQGHPDDYASLYETLTRRFERFVSKPDNGTHPSLPQLVV
IDGGKGQLSSAVQALRTLGLHGKVPVISIAKAEEAVFVDGKRQAINYDVG
SGAHVMCDGVRLVCRLRDEAHRTALMAHRRRRGKQALKSGLDSVSGLGPR
KRAALLEHFNGSVEAIANAMPDQLSQAPGIGPALADRLYSHFRDSAT*

mRNA from alignment at tig00000879_pilon:428393..430486-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6289.t1 ID=Ggra6289.t1|Name=Ggra6289.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2094bp|location=Sequence derived from alignment at tig00000879_pilon:428393..430486- (Gracilaria gracilis GNS1m male)
ATGTTGACCTTCCTCGTCCACGCTCTGCCCCGCAACCCGCTGCGCCACGG
CGGCGTGCCGCACTCCACGCGCGTGCGATGCTGCGCCGTTTCATCAAGCG
GCGCCCATTCGCTGTCGCACGCGCTGGCAGCCGCGCCGTCGCAGCCCGGC
GTGTACCGCTTTCTGGACCACGCCAACCGCGCGCTGTACGTCGGCAAGGC
GCGCCGATTGCGAACGCGCCTGCGACAGTACCTCACCGTGTCGCCGCACG
CGCCTTCGGGCGTCGCGCCGGCGCGTGGCCTCTCGCCGCGCATTCACGCC
ATGCTGGCCGCTGCCGCTTCGCTCGACTTTATCATCACCGATACGGAGGC
GGCCGCGCTGGCGTTGGAGGCGTCCATTGTTCATGAGAGTCAGCCGTTTT
ATAACGTTTTGCTCAAGGATGATCGCCGCCATCCGTACGTGTTGATCACG
CTTTCGGAGACGTATCCGCGCATCACCATCACCAGGAGTAGGAACAAGCC
CGATGAGCGCGATGTGATATACGGACCTTTTGTTAATGAGAACGTGTTGC
GCAAGCTGCTCACCGTCATACACGCAACGTTTCCACTTCGACAACGGCGC
AACAAACTCTTCTCGGACCGCCCGTGCATCAACTATGACCTGGGCAGATG
CCCTGGCGTCTGTCAACAACTCGTGACGCCGCTGGATTACAGAAAGACAA
TTGATTACGTTCACAAGTTGTTCTCTGGTCGTATAACGGAGGTCATCAAG
CACTTACGTGTAGACATGTCACGTCATTCCTCGTTGCTGCAGTACGAGCA
GGCTGCAATCATTCGTGATCGAATTGCCAGTCTTGAAAATGCTTTCGGCG
ATGCGATGGGTCTTCACGGTGCTTTTGAAGATCTACAGCACGCGTCTGCC
ATTATTTCGCCAAACTCATCAAGCTCGCGCGATGTCTTTGCCATTTCTAC
AAACCACACCGTCGGCAAAATTGTTCTCTTCCAAGTCAGAAGCGGCAAAC
TGATTTCAAGACTTGTCTTCACTGTAGATGCGACCGCTGAACACGCACAG
TTGCTCAATGCGGTGCTGACGGCCCACTACGCCCGCCTCTCACATGCGAT
GGAGATTCCTGAAGAGCTTGTGCTTTGCACCCCGACTGCAGACAAGGCAA
TGTTGCAAGCAGCACTAAGCGAGAAAAGAGGCAAGAAGGTCGTTGTCAAA
GGTAAGAAGGGAGTGGCTTTGGCAGACATTGCTCAAAGAAACGCAGATAT
GGAGGTAAACATTGAAACAGGCCGAATCCATGACGCAGCAAAAGACCTCA
GCGCTCTTGAGCACTTGATTAAACCATACCTGCACTCATTCAAAGTATGC
CATAGTGCTGCCGGCCCATCAGAACAAGACCCTTCGCAACACCATACGGT
CTTGAAGAGAATAGAATGCTTTGATGTATCCCACACCAGCGGATCGAATG
CTGTAGGGTCAATGGCAGTGTTTCTAAACGGTTCTCCGTGTTTGTCAGAG
TATCGAAGGTACAATCTTGGACCACAGAGTTCGTACCAAGGCCACCCCGA
TGACTACGCATCCTTGTACGAAACACTCACCAGAAGATTCGAACGTTTCG
TGAGCAAACCTGACAACGGTACACATCCATCTCTCCCACAACTGGTTGTC
ATTGATGGGGGCAAAGGTCAACTCAGTTCTGCTGTGCAAGCTTTGCGGAC
ACTCGGCCTACATGGAAAAGTGCCTGTGATTAGTATCGCCAAGGCGGAGG
AGGCCGTGTTTGTGGATGGCAAAAGACAAGCGATCAATTACGATGTTGGT
TCCGGAGCACATGTCATGTGCGATGGAGTTCGTCTTGTTTGTCGGTTGAG
AGACGAAGCTCACCGAACAGCTTTGATGGCGCACAGGAGAAGAAGAGGAA
AGCAGGCTTTGAAATCCGGCCTTGATTCAGTTTCCGGTCTCGGTCCGCGG
AAACGGGCTGCACTCTTGGAACATTTCAATGGAAGCGTTGAAGCAATCGC
CAATGCCATGCCGGATCAGCTATCACAGGCCCCTGGTATAGGGCCTGCTC
TTGCAGATAGGTTATACTCCCACTTTCGTGACAGCGCAACATGA

Coding sequence (CDS) from alignment at tig00000879_pilon:428393..430486-

>Ggra6289.t1 ID=Ggra6289.t1|Name=Ggra6289.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2094bp|location=Sequence derived from alignment at tig00000879_pilon:428393..430486- (Gracilaria gracilis GNS1m male)
ATGTTGACCTTCCTCGTCCACGCTCTGCCCCGCAACCCGCTGCGCCACGG
CGGCGTGCCGCACTCCACGCGCGTGCGATGCTGCGCCGTTTCATCAAGCG
GCGCCCATTCGCTGTCGCACGCGCTGGCAGCCGCGCCGTCGCAGCCCGGC
GTGTACCGCTTTCTGGACCACGCCAACCGCGCGCTGTACGTCGGCAAGGC
GCGCCGATTGCGAACGCGCCTGCGACAGTACCTCACCGTGTCGCCGCACG
CGCCTTCGGGCGTCGCGCCGGCGCGTGGCCTCTCGCCGCGCATTCACGCC
ATGCTGGCCGCTGCCGCTTCGCTCGACTTTATCATCACCGATACGGAGGC
GGCCGCGCTGGCGTTGGAGGCGTCCATTGTTCATGAGAGTCAGCCGTTTT
ATAACGTTTTGCTCAAGGATGATCGCCGCCATCCGTACGTGTTGATCACG
CTTTCGGAGACGTATCCGCGCATCACCATCACCAGGAGTAGGAACAAGCC
CGATGAGCGCGATGTGATATACGGACCTTTTGTTAATGAGAACGTGTTGC
GCAAGCTGCTCACCGTCATACACGCAACGTTTCCACTTCGACAACGGCGC
AACAAACTCTTCTCGGACCGCCCGTGCATCAACTATGACCTGGGCAGATG
CCCTGGCGTCTGTCAACAACTCGTGACGCCGCTGGATTACAGAAAGACAA
TTGATTACGTTCACAAGTTGTTCTCTGGTCGTATAACGGAGGTCATCAAG
CACTTACGTGTAGACATGTCACGTCATTCCTCGTTGCTGCAGTACGAGCA
GGCTGCAATCATTCGTGATCGAATTGCCAGTCTTGAAAATGCTTTCGGCG
ATGCGATGGGTCTTCACGGTGCTTTTGAAGATCTACAGCACGCGTCTGCC
ATTATTTCGCCAAACTCATCAAGCTCGCGCGATGTCTTTGCCATTTCTAC
AAACCACACCGTCGGCAAAATTGTTCTCTTCCAAGTCAGAAGCGGCAAAC
TGATTTCAAGACTTGTCTTCACTGTAGATGCGACCGCTGAACACGCACAG
TTGCTCAATGCGGTGCTGACGGCCCACTACGCCCGCCTCTCACATGCGAT
GGAGATTCCTGAAGAGCTTGTGCTTTGCACCCCGACTGCAGACAAGGCAA
TGTTGCAAGCAGCACTAAGCGAGAAAAGAGGCAAGAAGGTCGTTGTCAAA
GGTAAGAAGGGAGTGGCTTTGGCAGACATTGCTCAAAGAAACGCAGATAT
GGAGGTAAACATTGAAACAGGCCGAATCCATGACGCAGCAAAAGACCTCA
GCGCTCTTGAGCACTTGATTAAACCATACCTGCACTCATTCAAAGTATGC
CATAGTGCTGCCGGCCCATCAGAACAAGACCCTTCGCAACACCATACGGT
CTTGAAGAGAATAGAATGCTTTGATGTATCCCACACCAGCGGATCGAATG
CTGTAGGGTCAATGGCAGTGTTTCTAAACGGTTCTCCGTGTTTGTCAGAG
TATCGAAGGTACAATCTTGGACCACAGAGTTCGTACCAAGGCCACCCCGA
TGACTACGCATCCTTGTACGAAACACTCACCAGAAGATTCGAACGTTTCG
TGAGCAAACCTGACAACGGTACACATCCATCTCTCCCACAACTGGTTGTC
ATTGATGGGGGCAAAGGTCAACTCAGTTCTGCTGTGCAAGCTTTGCGGAC
ACTCGGCCTACATGGAAAAGTGCCTGTGATTAGTATCGCCAAGGCGGAGG
AGGCCGTGTTTGTGGATGGCAAAAGACAAGCGATCAATTACGATGTTGGT
TCCGGAGCACATGTCATGTGCGATGGAGTTCGTCTTGTTTGTCGGTTGAG
AGACGAAGCTCACCGAACAGCTTTGATGGCGCACAGGAGAAGAAGAGGAA
AGCAGGCTTTGAAATCCGGCCTTGATTCAGTTTCCGGTCTCGGTCCGCGG
AAACGGGCTGCACTCTTGGAACATTTCAATGGAAGCGTTGAAGCAATCGC
CAATGCCATGCCGGATCAGCTATCACAGGCCCCTGGTATAGGGCCTGCTC
TTGCAGATAGGTTATACTCCCACTTTCGTGACAGCGCAACATGA