Ggra6288.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6288.t1
Unique NameGgra6288.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length408
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:426767..428128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6288Ggra6288Gracilaria gracilis GNS1m malegenetig00000879_pilon 426767..428128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6288.t1Ggra6288.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 426767..428128 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6288.t1.start1Ggra6288.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 426767..426769 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6288.t1.CDS1Ggra6288.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 426767..426863 +
Ggra6288.t1.CDS2Ggra6288.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000879_pilon 426931..427345 +
Ggra6288.t1.CDS3Ggra6288.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000879_pilon 427417..428128 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6288.t1.exon1Ggra6288.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 426767..426863 +
Ggra6288.t1.exon2Ggra6288.t1.exon2Gracilaria gracilis GNS1m maleexontig00000879_pilon 426931..427345 +
Ggra6288.t1.exon3Ggra6288.t1.exon3Gracilaria gracilis GNS1m maleexontig00000879_pilon 427417..428128 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6288.t1.intron1Ggra6288.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000879_pilon 426864..426930 +
Ggra6288.t1.intron2Ggra6288.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000879_pilon 427346..427416 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6288.t1.stop1Ggra6288.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 428126..428128 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6288.t1 ID=Ggra6288.t1|Name=Ggra6288.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=408bp
MNSSPDNQEKKLLKYIKEGPVKADQHRFEHILTIPRELEGQLRLWDDEIE
ICDQAICVGKALDAIIDTYEEVLAHFSRITDLRNSFYQSPEKMMVAEVLL
CDGALDRLLSSIVRVRKRIRALYDELKTLCAACMNVRNSAQKAYQVFDNP
IRMRVLNDPSIRECVEKAKLKAIVLKELGNRISSIACGGDSMFKYLQKSW
RCQDQEQIARPSTSGSRSEAPQTNTGCDISRGKPTCSQGKPPKCQKGPLA
SDEECQRTPNEVPETPESDRIEALAKTQRSSPKKKPSLSHSQKRRRENEK
ERRIVVAKTLELDTPRRNMSSPDVRSSMQATVRNPGTQEEEKANNEQEAV
MQELVPNRAGEQQPVASDRSKGTVENNGTDNGESLRPTKNDSERNESSVE
QPASMSI*
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spliced messenger RNA

>Ggra6288.t1 ID=Ggra6288.t1|Name=Ggra6288.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1224bp|location=Sequence derived from alignment at tig00000879_pilon:426767..428128+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAGCAGTCCGGATAATCAGGAGAAGAAGCTCCTGAAATACATCAA
AGAAGGCCCGGTGAAGGCTGATCAACATCGCTTCGAGCACATTTTAACCA
TACCAAGAGAATTAGAAGGGCAGCTTCGGCTTTGGGATGATGAAATCGAA
ATATGTGATCAGGCGATATGCGTTGGAAAAGCTTTGGATGCCATCATTGA
CACATATGAAGAAGTATTGGCTCACTTTAGCCGCATCACAGACTTGAGAA
ACAGTTTCTATCAGTCTCCCGAAAAAATGATGGTTGCGGAGGTCCTTCTT
TGCGACGGAGCGCTGGATAGATTGCTCTCGTCCATAGTGAGAGTTCGGAA
ACGTATCAGAGCGTTGTATGACGAGCTGAAAACTCTTTGCGCGGCTTGCA
TGAACGTGCGTAACAGTGCCCAGAAAGCCTACCAAGTTTTTGACAATCCA
ATCCGAATGAGAGTTTTGAATGATCCCTCCATCAGAGAGTGTGTGGAAAA
AGCAAAACTAAAAGCTATTGTTCTCAAGGAGCTTGGAAATCGCATATCTT
CTATTGCATGTGGTGGGGATTCAATGTTCAAGTATTTACAGAAGTCTTGG
AGATGTCAGGATCAAGAACAAATTGCTAGACCAAGCACAAGTGGAAGTCG
CAGTGAAGCTCCACAGACGAACACTGGGTGCGATATCTCAAGAGGGAAAC
CTACTTGTTCCCAGGGTAAACCACCCAAATGTCAAAAGGGCCCGTTGGCC
TCTGATGAAGAATGTCAAAGGACCCCAAACGAAGTACCGGAGACTCCAGA
AAGCGATCGTATCGAAGCACTCGCAAAGACGCAGAGGTCATCTCCGAAAA
AGAAACCGTCGCTATCGCACTCGCAAAAAAGACGTCGTGAGAACGAGAAG
GAGCGTCGTATTGTCGTGGCGAAAACGCTTGAGCTGGATACACCTCGCCG
AAACATGAGTTCTCCAGACGTAAGGTCTAGTATGCAAGCTACTGTCAGAA
ATCCAGGTACACAAGAAGAGGAGAAGGCAAACAATGAGCAAGAAGCTGTG
ATGCAGGAATTGGTGCCCAATCGTGCCGGGGAACAGCAACCTGTTGCTTC
AGACCGATCTAAGGGCACTGTTGAGAACAACGGCACTGATAACGGAGAGA
GCCTTCGTCCGACGAAGAATGACTCGGAAAGAAACGAAAGCTCTGTTGAG
CAACCCGCGAGTATGTCAATTTAG
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protein sequence of Ggra6288.t1

>Ggra6288.t1 ID=Ggra6288.t1|Name=Ggra6288.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=408bp
MNSSPDNQEKKLLKYIKEGPVKADQHRFEHILTIPRELEGQLRLWDDEIE
ICDQAICVGKALDAIIDTYEEVLAHFSRITDLRNSFYQSPEKMMVAEVLL
CDGALDRLLSSIVRVRKRIRALYDELKTLCAACMNVRNSAQKAYQVFDNP
IRMRVLNDPSIRECVEKAKLKAIVLKELGNRISSIACGGDSMFKYLQKSW
RCQDQEQIARPSTSGSRSEAPQTNTGCDISRGKPTCSQGKPPKCQKGPLA
SDEECQRTPNEVPETPESDRIEALAKTQRSSPKKKPSLSHSQKRRRENEK
ERRIVVAKTLELDTPRRNMSSPDVRSSMQATVRNPGTQEEEKANNEQEAV
MQELVPNRAGEQQPVASDRSKGTVENNGTDNGESLRPTKNDSERNESSVE
QPASMSI*
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mRNA from alignment at tig00000879_pilon:426767..428128+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6288.t1 ID=Ggra6288.t1|Name=Ggra6288.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1362bp|location=Sequence derived from alignment at tig00000879_pilon:426767..428128+ (Gracilaria gracilis GNS1m male)
ATGAACAGCAGTCCGGATAATCAGGAGAAGAAGCTCCTGAAATACATCAA
AGAAGGCCCGGTGAAGGCTGATCAACATCGCTTCGAGCACATTTTAAGTA
AGTCACGAAAATTACAAGAGCAATAAAGAACTCTAGAACCTAACTTTTCT
CGGTTAACTCTCAGCCATACCAAGAGAATTAGAAGGGCAGCTTCGGCTTT
GGGATGATGAAATCGAAATATGTGATCAGGCGATATGCGTTGGAAAAGCT
TTGGATGCCATCATTGACACATATGAAGAAGTATTGGCTCACTTTAGCCG
CATCACAGACTTGAGAAACAGTTTCTATCAGTCTCCCGAAAAAATGATGG
TTGCGGAGGTCCTTCTTTGCGACGGAGCGCTGGATAGATTGCTCTCGTCC
ATAGTGAGAGTTCGGAAACGTATCAGAGCGTTGTATGACGAGCTGAAAAC
TCTTTGCGCGGCTTGCATGAACGTGCGTAACAGTGCCCAGAAAGCCTACC
AAGTTTTTGACAATCCAATCCGAATGAGAGTTTTGAATGATCCCTCCATC
AGAGAGTGTGTGGAAAAAGCAAAACTAAAGTAAGTAATATGCCTTGTCTG
GCTTTTACAGAGTTCCGCAGAAGACTGACCGAGAGACTACTATGAATCAG
AGCTATTGTTCTCAAGGAGCTTGGAAATCGCATATCTTCTATTGCATGTG
GTGGGGATTCAATGTTCAAGTATTTACAGAAGTCTTGGAGATGTCAGGAT
CAAGAACAAATTGCTAGACCAAGCACAAGTGGAAGTCGCAGTGAAGCTCC
ACAGACGAACACTGGGTGCGATATCTCAAGAGGGAAACCTACTTGTTCCC
AGGGTAAACCACCCAAATGTCAAAAGGGCCCGTTGGCCTCTGATGAAGAA
TGTCAAAGGACCCCAAACGAAGTACCGGAGACTCCAGAAAGCGATCGTAT
CGAAGCACTCGCAAAGACGCAGAGGTCATCTCCGAAAAAGAAACCGTCGC
TATCGCACTCGCAAAAAAGACGTCGTGAGAACGAGAAGGAGCGTCGTATT
GTCGTGGCGAAAACGCTTGAGCTGGATACACCTCGCCGAAACATGAGTTC
TCCAGACGTAAGGTCTAGTATGCAAGCTACTGTCAGAAATCCAGGTACAC
AAGAAGAGGAGAAGGCAAACAATGAGCAAGAAGCTGTGATGCAGGAATTG
GTGCCCAATCGTGCCGGGGAACAGCAACCTGTTGCTTCAGACCGATCTAA
GGGCACTGTTGAGAACAACGGCACTGATAACGGAGAGAGCCTTCGTCCGA
CGAAGAATGACTCGGAAAGAAACGAAAGCTCTGTTGAGCAACCCGCGAGT
ATGTCAATTTAG
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Coding sequence (CDS) from alignment at tig00000879_pilon:426767..428128+

>Ggra6288.t1 ID=Ggra6288.t1|Name=Ggra6288.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1224bp|location=Sequence derived from alignment at tig00000879_pilon:426767..428128+ (Gracilaria gracilis GNS1m male)
ATGAACAGCAGTCCGGATAATCAGGAGAAGAAGCTCCTGAAATACATCAA
AGAAGGCCCGGTGAAGGCTGATCAACATCGCTTCGAGCACATTTTAACCA
TACCAAGAGAATTAGAAGGGCAGCTTCGGCTTTGGGATGATGAAATCGAA
ATATGTGATCAGGCGATATGCGTTGGAAAAGCTTTGGATGCCATCATTGA
CACATATGAAGAAGTATTGGCTCACTTTAGCCGCATCACAGACTTGAGAA
ACAGTTTCTATCAGTCTCCCGAAAAAATGATGGTTGCGGAGGTCCTTCTT
TGCGACGGAGCGCTGGATAGATTGCTCTCGTCCATAGTGAGAGTTCGGAA
ACGTATCAGAGCGTTGTATGACGAGCTGAAAACTCTTTGCGCGGCTTGCA
TGAACGTGCGTAACAGTGCCCAGAAAGCCTACCAAGTTTTTGACAATCCA
ATCCGAATGAGAGTTTTGAATGATCCCTCCATCAGAGAGTGTGTGGAAAA
AGCAAAACTAAAAGCTATTGTTCTCAAGGAGCTTGGAAATCGCATATCTT
CTATTGCATGTGGTGGGGATTCAATGTTCAAGTATTTACAGAAGTCTTGG
AGATGTCAGGATCAAGAACAAATTGCTAGACCAAGCACAAGTGGAAGTCG
CAGTGAAGCTCCACAGACGAACACTGGGTGCGATATCTCAAGAGGGAAAC
CTACTTGTTCCCAGGGTAAACCACCCAAATGTCAAAAGGGCCCGTTGGCC
TCTGATGAAGAATGTCAAAGGACCCCAAACGAAGTACCGGAGACTCCAGA
AAGCGATCGTATCGAAGCACTCGCAAAGACGCAGAGGTCATCTCCGAAAA
AGAAACCGTCGCTATCGCACTCGCAAAAAAGACGTCGTGAGAACGAGAAG
GAGCGTCGTATTGTCGTGGCGAAAACGCTTGAGCTGGATACACCTCGCCG
AAACATGAGTTCTCCAGACGTAAGGTCTAGTATGCAAGCTACTGTCAGAA
ATCCAGGTACACAAGAAGAGGAGAAGGCAAACAATGAGCAAGAAGCTGTG
ATGCAGGAATTGGTGCCCAATCGTGCCGGGGAACAGCAACCTGTTGCTTC
AGACCGATCTAAGGGCACTGTTGAGAACAACGGCACTGATAACGGAGAGA
GCCTTCGTCCGACGAAGAATGACTCGGAAAGAAACGAAAGCTCTGTTGAG
CAACCCGCGAGTATGTCAATTTAG
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