Ggra6284.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6284.t1
Unique Name	Ggra6284.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	334

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000879_pilon	contig	tig00000879_pilon:413766..414767 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6284	Ggra6284	Gracilaria gracilis GNS1m male	gene	tig00000879_pilon 413766..414767 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6284.t1.start1	Ggra6284.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000879_pilon 413766..413768 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6284.t1.CDS1	Ggra6284.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000879_pilon 413766..414767 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6284.t1.exon1	Ggra6284.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000879_pilon 413766..414767 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6284.t1.stop1	Ggra6284.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000879_pilon 414765..414767 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6284.t1	Ggra6284.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000879_pilon 413766..414767 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000879_pilon:413766..414767+
coding sequence from alignment at tig00000879_pilon:413766..414767+

mRNA sequence

>Ggra6284.t1 ID=Ggra6284.t1|Name=Ggra6284.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=334bp
MESFTCVQTGSMEEQIVSVPPGVHGRSLGRKEFVTPTHRDESNGARIPCS
PEAFLYPFVDNGVLDIFVDNKDYELKDSVRRLRFVVAAEIVGNLLEPVSM
PVRLPSPTQNCETAVCTTRNISCVAKLVAEPPGGRRVKHLGQTQERKESN
AHGLKEAALEGAGGVRKSRLAVSGCYRHGYDGVEFELEPITPPMAAQGVR
GEGGGVAEHAGSVRSRKLFKMFSRAEKRRHSAVSGEEGDEGEEDEPLSGG
RSAVLAKVWSRVGRIFSKVSTNSEQELNKDDDTLEVAAADAQRASGLGTG
TWRTERATGRRQSKPLLRRLGSKVKKMFIRLVK*

spliced messenger RNA

>Ggra6284.t1 ID=Ggra6284.t1|Name=Ggra6284.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000879_pilon:413766..414767+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAGCTTTACATGCGTTCAAACTGGTTCCATGGAAGAACAGATTGT
TTCCGTCCCCCCAGGTGTTCATGGACGTTCTCTTGGAAGAAAGGAATTCG
TCACTCCTACCCACCGTGACGAGTCAAACGGCGCCCGAATTCCGTGTTCG
CCAGAGGCGTTTCTTTACCCATTTGTCGACAACGGAGTTCTAGACATCTT
TGTCGACAACAAAGATTACGAGCTGAAAGACTCCGTCAGAAGGCTTCGTT
TCGTAGTGGCGGCAGAGATTGTGGGAAATCTGCTGGAACCTGTGTCTATG
CCAGTCAGGTTGCCGTCGCCCACACAGAATTGCGAAACAGCTGTTTGCAC
GACCCGGAATATCAGCTGCGTCGCAAAGTTAGTCGCCGAGCCACCAGGTG
GCCGTCGCGTCAAACATCTTGGGCAGACCCAAGAGAGGAAAGAAAGCAAC
GCGCATGGGTTGAAAGAGGCAGCCTTGGAAGGAGCAGGCGGCGTTCGGAA
GAGTAGACTCGCAGTTAGCGGGTGCTACAGACACGGGTATGACGGGGTGG
AGTTTGAGTTGGAGCCCATAACGCCGCCTATGGCTGCACAAGGCGTACGC
GGAGAGGGAGGCGGCGTCGCAGAACATGCAGGTTCTGTTCGGTCTCGGAA
GCTGTTTAAAATGTTTTCTCGGGCTGAGAAGCGCAGACACAGCGCGGTTT
CTGGGGAAGAAGGGGATGAGGGCGAAGAAGACGAACCGTTGTCGGGGGGG
CGATCGGCAGTGCTGGCAAAGGTTTGGTCGAGGGTTGGACGTATTTTTTC
TAAGGTATCTACAAATTCAGAGCAAGAGCTCAACAAGGACGATGATACGC
TGGAAGTTGCCGCTGCAGACGCACAGCGCGCAAGCGGGCTAGGTACTGGT
ACATGGCGGACTGAACGTGCAACTGGTAGGAGACAAAGCAAGCCTCTTTT
AAGAAGGTTGGGAAGCAAAGTGAAGAAAATGTTTATTCGGCTTGTGAAGT
AA

protein sequence of Ggra6284.t1

>Ggra6284.t1 ID=Ggra6284.t1|Name=Ggra6284.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=334bp
MESFTCVQTGSMEEQIVSVPPGVHGRSLGRKEFVTPTHRDESNGARIPCS
PEAFLYPFVDNGVLDIFVDNKDYELKDSVRRLRFVVAAEIVGNLLEPVSM
PVRLPSPTQNCETAVCTTRNISCVAKLVAEPPGGRRVKHLGQTQERKESN
AHGLKEAALEGAGGVRKSRLAVSGCYRHGYDGVEFELEPITPPMAAQGVR
GEGGGVAEHAGSVRSRKLFKMFSRAEKRRHSAVSGEEGDEGEEDEPLSGG
RSAVLAKVWSRVGRIFSKVSTNSEQELNKDDDTLEVAAADAQRASGLGTG
TWRTERATGRRQSKPLLRRLGSKVKKMFIRLVK*

mRNA from alignment at tig00000879_pilon:413766..414767+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6284.t1 ID=Ggra6284.t1|Name=Ggra6284.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000879_pilon:413766..414767+ (Gracilaria gracilis GNS1m male)
ATGGAAAGCTTTACATGCGTTCAAACTGGTTCCATGGAAGAACAGATTGT
TTCCGTCCCCCCAGGTGTTCATGGACGTTCTCTTGGAAGAAAGGAATTCG
TCACTCCTACCCACCGTGACGAGTCAAACGGCGCCCGAATTCCGTGTTCG
CCAGAGGCGTTTCTTTACCCATTTGTCGACAACGGAGTTCTAGACATCTT
TGTCGACAACAAAGATTACGAGCTGAAAGACTCCGTCAGAAGGCTTCGTT
TCGTAGTGGCGGCAGAGATTGTGGGAAATCTGCTGGAACCTGTGTCTATG
CCAGTCAGGTTGCCGTCGCCCACACAGAATTGCGAAACAGCTGTTTGCAC
GACCCGGAATATCAGCTGCGTCGCAAAGTTAGTCGCCGAGCCACCAGGTG
GCCGTCGCGTCAAACATCTTGGGCAGACCCAAGAGAGGAAAGAAAGCAAC
GCGCATGGGTTGAAAGAGGCAGCCTTGGAAGGAGCAGGCGGCGTTCGGAA
GAGTAGACTCGCAGTTAGCGGGTGCTACAGACACGGGTATGACGGGGTGG
AGTTTGAGTTGGAGCCCATAACGCCGCCTATGGCTGCACAAGGCGTACGC
GGAGAGGGAGGCGGCGTCGCAGAACATGCAGGTTCTGTTCGGTCTCGGAA
GCTGTTTAAAATGTTTTCTCGGGCTGAGAAGCGCAGACACAGCGCGGTTT
CTGGGGAAGAAGGGGATGAGGGCGAAGAAGACGAACCGTTGTCGGGGGGG
CGATCGGCAGTGCTGGCAAAGGTTTGGTCGAGGGTTGGACGTATTTTTTC
TAAGGTATCTACAAATTCAGAGCAAGAGCTCAACAAGGACGATGATACGC
TGGAAGTTGCCGCTGCAGACGCACAGCGCGCAAGCGGGCTAGGTACTGGT
ACATGGCGGACTGAACGTGCAACTGGTAGGAGACAAAGCAAGCCTCTTTT
AAGAAGGTTGGGAAGCAAAGTGAAGAAAATGTTTATTCGGCTTGTGAAGT
AA

Coding sequence (CDS) from alignment at tig00000879_pilon:413766..414767+

>Ggra6284.t1 ID=Ggra6284.t1|Name=Ggra6284.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1002bp|location=Sequence derived from alignment at tig00000879_pilon:413766..414767+ (Gracilaria gracilis GNS1m male)
ATGGAAAGCTTTACATGCGTTCAAACTGGTTCCATGGAAGAACAGATTGT
TTCCGTCCCCCCAGGTGTTCATGGACGTTCTCTTGGAAGAAAGGAATTCG
TCACTCCTACCCACCGTGACGAGTCAAACGGCGCCCGAATTCCGTGTTCG
CCAGAGGCGTTTCTTTACCCATTTGTCGACAACGGAGTTCTAGACATCTT
TGTCGACAACAAAGATTACGAGCTGAAAGACTCCGTCAGAAGGCTTCGTT
TCGTAGTGGCGGCAGAGATTGTGGGAAATCTGCTGGAACCTGTGTCTATG
CCAGTCAGGTTGCCGTCGCCCACACAGAATTGCGAAACAGCTGTTTGCAC
GACCCGGAATATCAGCTGCGTCGCAAAGTTAGTCGCCGAGCCACCAGGTG
GCCGTCGCGTCAAACATCTTGGGCAGACCCAAGAGAGGAAAGAAAGCAAC
GCGCATGGGTTGAAAGAGGCAGCCTTGGAAGGAGCAGGCGGCGTTCGGAA
GAGTAGACTCGCAGTTAGCGGGTGCTACAGACACGGGTATGACGGGGTGG
AGTTTGAGTTGGAGCCCATAACGCCGCCTATGGCTGCACAAGGCGTACGC
GGAGAGGGAGGCGGCGTCGCAGAACATGCAGGTTCTGTTCGGTCTCGGAA
GCTGTTTAAAATGTTTTCTCGGGCTGAGAAGCGCAGACACAGCGCGGTTT
CTGGGGAAGAAGGGGATGAGGGCGAAGAAGACGAACCGTTGTCGGGGGGG
CGATCGGCAGTGCTGGCAAAGGTTTGGTCGAGGGTTGGACGTATTTTTTC
TAAGGTATCTACAAATTCAGAGCAAGAGCTCAACAAGGACGATGATACGC
TGGAAGTTGCCGCTGCAGACGCACAGCGCGCAAGCGGGCTAGGTACTGGT
ACATGGCGGACTGAACGTGCAACTGGTAGGAGACAAAGCAAGCCTCTTTT
AAGAAGGTTGGGAAGCAAAGTGAAGAAAATGTTTATTCGGCTTGTGAAGT
AA