Ggra6282.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6282.t1
Unique NameGgra6282.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length255
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:406274..407038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1547437.LL06_26690
PFAMsLigB
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00387
KEGG koko:K15777
KEGG ReactionR08836
KEGG Pathwayko00965,map00965
Evalue5.95e-79
EggNOG OGsCOG3384@1|root,COG3384@2|Bacteria,1MXJZ@1224|Proteobacteria,2TRJT@28211|Alphaproteobacteria,43HVU@69277|Phyllobacteriaceae
DescriptionCatalytic LigB subunit of aromatic ring-opening dioxygenase
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6282Ggra6282Gracilaria gracilis GNS1m malegenetig00000879_pilon 406274..407038 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6282.t1.start1Ggra6282.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 406274..406276 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6282.t1.CDS1Ggra6282.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 406274..407038 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6282.t1.exon1Ggra6282.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 406274..407038 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6282.t1.stop1Ggra6282.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 407036..407038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6282.t1Ggra6282.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 406274..407038 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6282.t1 ID=Ggra6282.t1|Name=Ggra6282.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=255bp
MALSNTPVTQFLTNLGSRYAKPRAAIVISAHFETTGAAVVTDPAPRTMYD
FGNFDERLFKMKYPAPGYPKLAEEVFELLRDADISVKKIANKGYDHGVWV
PLSLVWPDADVPIIQVSIDPDQGADYHFRLGRALQSLPKQDIAVIGTGNI
SHNLPALFSSGQNEQRDAEFMRRVKGFLGWFDAQIEASNVDNLLNYRNRA
PFAKDNHPTEDHLVPLYAAMGAAGEGFKGKKIHESFDFEILAMDAWEFDL
DSGR*
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spliced messenger RNA

>Ggra6282.t1 ID=Ggra6282.t1|Name=Ggra6282.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=765bp|location=Sequence derived from alignment at tig00000879_pilon:406274..407038+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTGAGTAACACGCCAGTGACACAGTTCCTGACCAATTTGGGCTC
TCGGTACGCGAAACCACGCGCAGCTATCGTAATCTCCGCGCACTTCGAGA
CCACTGGCGCCGCGGTGGTAACCGACCCCGCGCCGCGAACGATGTACGAT
TTCGGTAACTTTGATGAACGCCTGTTTAAGATGAAGTACCCGGCACCAGG
TTATCCGAAACTGGCTGAGGAAGTGTTCGAACTCCTTCGAGATGCTGACA
TTTCGGTAAAGAAGATTGCAAACAAAGGATATGATCATGGAGTGTGGGTC
CCTCTATCTCTGGTATGGCCTGATGCAGACGTTCCTATCATTCAGGTGTC
TATCGATCCTGACCAAGGTGCAGACTACCACTTCCGGCTTGGCAGGGCTC
TTCAATCACTTCCGAAGCAAGATATAGCCGTGATAGGCACTGGCAACATC
AGTCACAACCTGCCCGCGCTATTTTCATCCGGTCAAAATGAGCAACGAGA
TGCCGAGTTTATGCGACGCGTGAAGGGATTTTTGGGGTGGTTTGATGCAC
AGATCGAGGCTTCAAATGTGGACAATCTTCTGAATTATCGAAACAGAGCG
CCGTTTGCGAAGGATAATCATCCTACGGAAGATCATCTTGTGCCACTCTA
TGCGGCGATGGGCGCGGCTGGGGAAGGATTTAAGGGAAAGAAGATTCATG
AGTCCTTCGACTTCGAGATTCTTGCGATGGATGCGTGGGAGTTTGATCTG
GATTCGGGCAGGTGA
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protein sequence of Ggra6282.t1

>Ggra6282.t1 ID=Ggra6282.t1|Name=Ggra6282.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=255bp
MALSNTPVTQFLTNLGSRYAKPRAAIVISAHFETTGAAVVTDPAPRTMYD
FGNFDERLFKMKYPAPGYPKLAEEVFELLRDADISVKKIANKGYDHGVWV
PLSLVWPDADVPIIQVSIDPDQGADYHFRLGRALQSLPKQDIAVIGTGNI
SHNLPALFSSGQNEQRDAEFMRRVKGFLGWFDAQIEASNVDNLLNYRNRA
PFAKDNHPTEDHLVPLYAAMGAAGEGFKGKKIHESFDFEILAMDAWEFDL
DSGR*
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mRNA from alignment at tig00000879_pilon:406274..407038+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6282.t1 ID=Ggra6282.t1|Name=Ggra6282.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=765bp|location=Sequence derived from alignment at tig00000879_pilon:406274..407038+ (Gracilaria gracilis GNS1m male)
ATGGCGTTGAGTAACACGCCAGTGACACAGTTCCTGACCAATTTGGGCTC
TCGGTACGCGAAACCACGCGCAGCTATCGTAATCTCCGCGCACTTCGAGA
CCACTGGCGCCGCGGTGGTAACCGACCCCGCGCCGCGAACGATGTACGAT
TTCGGTAACTTTGATGAACGCCTGTTTAAGATGAAGTACCCGGCACCAGG
TTATCCGAAACTGGCTGAGGAAGTGTTCGAACTCCTTCGAGATGCTGACA
TTTCGGTAAAGAAGATTGCAAACAAAGGATATGATCATGGAGTGTGGGTC
CCTCTATCTCTGGTATGGCCTGATGCAGACGTTCCTATCATTCAGGTGTC
TATCGATCCTGACCAAGGTGCAGACTACCACTTCCGGCTTGGCAGGGCTC
TTCAATCACTTCCGAAGCAAGATATAGCCGTGATAGGCACTGGCAACATC
AGTCACAACCTGCCCGCGCTATTTTCATCCGGTCAAAATGAGCAACGAGA
TGCCGAGTTTATGCGACGCGTGAAGGGATTTTTGGGGTGGTTTGATGCAC
AGATCGAGGCTTCAAATGTGGACAATCTTCTGAATTATCGAAACAGAGCG
CCGTTTGCGAAGGATAATCATCCTACGGAAGATCATCTTGTGCCACTCTA
TGCGGCGATGGGCGCGGCTGGGGAAGGATTTAAGGGAAAGAAGATTCATG
AGTCCTTCGACTTCGAGATTCTTGCGATGGATGCGTGGGAGTTTGATCTG
GATTCGGGCAGGTGA
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Coding sequence (CDS) from alignment at tig00000879_pilon:406274..407038+

>Ggra6282.t1 ID=Ggra6282.t1|Name=Ggra6282.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=765bp|location=Sequence derived from alignment at tig00000879_pilon:406274..407038+ (Gracilaria gracilis GNS1m male)
ATGGCGTTGAGTAACACGCCAGTGACACAGTTCCTGACCAATTTGGGCTC
TCGGTACGCGAAACCACGCGCAGCTATCGTAATCTCCGCGCACTTCGAGA
CCACTGGCGCCGCGGTGGTAACCGACCCCGCGCCGCGAACGATGTACGAT
TTCGGTAACTTTGATGAACGCCTGTTTAAGATGAAGTACCCGGCACCAGG
TTATCCGAAACTGGCTGAGGAAGTGTTCGAACTCCTTCGAGATGCTGACA
TTTCGGTAAAGAAGATTGCAAACAAAGGATATGATCATGGAGTGTGGGTC
CCTCTATCTCTGGTATGGCCTGATGCAGACGTTCCTATCATTCAGGTGTC
TATCGATCCTGACCAAGGTGCAGACTACCACTTCCGGCTTGGCAGGGCTC
TTCAATCACTTCCGAAGCAAGATATAGCCGTGATAGGCACTGGCAACATC
AGTCACAACCTGCCCGCGCTATTTTCATCCGGTCAAAATGAGCAACGAGA
TGCCGAGTTTATGCGACGCGTGAAGGGATTTTTGGGGTGGTTTGATGCAC
AGATCGAGGCTTCAAATGTGGACAATCTTCTGAATTATCGAAACAGAGCG
CCGTTTGCGAAGGATAATCATCCTACGGAAGATCATCTTGTGCCACTCTA
TGCGGCGATGGGCGCGGCTGGGGAAGGATTTAAGGGAAAGAAGATTCATG
AGTCCTTCGACTTCGAGATTCTTGCGATGGATGCGTGGGAGTTTGATCTG
GATTCGGGCAGGTGA
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