Ggra6281.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6281.t1
Unique NameGgra6281.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length309
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:402845..405284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6281Ggra6281Gracilaria gracilis GNS1m malegenetig00000879_pilon 402845..405284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6281.t1Ggra6281.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 402845..405284 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6281.t1.stop1Ggra6281.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 402845..402847 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6281.t1.CDS1Ggra6281.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 402845..403660 -
Ggra6281.t1.CDS2Ggra6281.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000879_pilon 405088..405155 -
Ggra6281.t1.CDS3Ggra6281.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000879_pilon 405242..405284 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6281.t1.exon1Ggra6281.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 402845..403660 -
Ggra6281.t1.exon2Ggra6281.t1.exon2Gracilaria gracilis GNS1m maleexontig00000879_pilon 405088..405155 -
Ggra6281.t1.exon3Ggra6281.t1.exon3Gracilaria gracilis GNS1m maleexontig00000879_pilon 405242..405284 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6281.t1.intron1Ggra6281.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000879_pilon 403661..405087 -
Ggra6281.t1.intron2Ggra6281.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000879_pilon 405156..405241 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6281.t1.start1Ggra6281.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 405282..405284 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6281.t1 ID=Ggra6281.t1|Name=Ggra6281.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=309bp
MISATVLTKEPAKNGCSFHAFNCVYPHLNFCAEQFTQHHKSLSSANYVHL
SRSLLPQKFRMESFACVQTGSMEEQIVSVPPGVYGRSLGRKEFVTPTPRD
ESNGARIPCSPEAFLYPFVDNGVLDIFVDNKDYELKNSVRRLRFVVAAEI
VGNLLEPVSMPVRLPSPTQNCETAVCTTRNISCVAKLVAEPPVGRRVEHL
GQTQERKESNAHGLKEAAMEGAGGVRKSRLAVSGRYRHGYDGVDFALEPI
TPPMAGQGVLLPVEGNGVTEHAGSVRSRKLFKKFSRPEGRQSKMGVSGAC
ELKIYMTL*
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spliced messenger RNA

>Ggra6281.t1 ID=Ggra6281.t1|Name=Ggra6281.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000879_pilon:402845..405284- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATATCTGCAACCGTGCTCACCAAGGAGCCTGCCAAAAACGGATGTTC
TTTCCACGCTTTTAATTGTGTCTACCCCCATCTAAACTTCTGCGCGGAGC
AATTCACCCAACACCACAAGAGTCTCAGCTCGGCAAACTACGTTCATCTC
AGTCGCTCTCTACTACCTCAAAAGTTCAGAATGGAAAGCTTTGCATGCGT
TCAAACTGGTTCCATGGAAGAACAGATTGTTTCCGTCCCCCCAGGTGTTT
ATGGACGTTCTCTTGGAAGAAAGGAATTCGTCACTCCTACCCCCCGTGAC
GAGTCAAACGGCGCCCGAATTCCGTGTTCGCCAGAGGCGTTTCTTTACCC
ATTTGTCGACAACGGAGTTCTAGACATCTTTGTCGACAACAAAGATTACG
AGTTGAAAAACTCCGTCAGAAGGCTTCGTTTCGTAGTGGCGGCAGAGATT
GTGGGAAATCTGCTGGAACCTGTGTCTATGCCAGTCAGGTTGCCGTCGCC
CACACAGAATTGCGAAACAGCTGTTTGCACGACCCGGAATATCAGCTGCG
TCGCAAAGTTAGTCGCCGAGCCACCAGTTGGCCGTCGCGTCGAACATCTT
GGGCAGACCCAAGAGAGGAAAGAAAGCAACGCGCATGGGTTGAAAGAGGC
AGCCATGGAAGGAGCAGGCGGCGTTCGGAAGAGTAGACTCGCAGTTAGCG
GGCGCTACAGACACGGGTATGACGGGGTGGATTTCGCATTGGAGCCCATA
ACGCCGCCTATGGCGGGTCAAGGCGTACTGTTACCCGTAGAGGGAAACGG
CGTCACAGAACATGCAGGTTCTGTTCGGTCTCGGAAGCTGTTTAAGAAGT
TTTCTCGGCCTGAAGGGAGGCAAAGCAAAATGGGGGTTTCGGGGGCTTGT
GAATTGAAAATCTACATGACCCTGTGA
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protein sequence of Ggra6281.t1

>Ggra6281.t1 ID=Ggra6281.t1|Name=Ggra6281.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=309bp
MISATVLTKEPAKNGCSFHAFNCVYPHLNFCAEQFTQHHKSLSSANYVHL
SRSLLPQKFRMESFACVQTGSMEEQIVSVPPGVYGRSLGRKEFVTPTPRD
ESNGARIPCSPEAFLYPFVDNGVLDIFVDNKDYELKNSVRRLRFVVAAEI
VGNLLEPVSMPVRLPSPTQNCETAVCTTRNISCVAKLVAEPPVGRRVEHL
GQTQERKESNAHGLKEAAMEGAGGVRKSRLAVSGRYRHGYDGVDFALEPI
TPPMAGQGVLLPVEGNGVTEHAGSVRSRKLFKKFSRPEGRQSKMGVSGAC
ELKIYMTL*
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mRNA from alignment at tig00000879_pilon:402845..405284-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6281.t1 ID=Ggra6281.t1|Name=Ggra6281.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2440bp|location=Sequence derived from alignment at tig00000879_pilon:402845..405284- (Gracilaria gracilis GNS1m male)
ATGATATCTGCAACCGTGCTCACCAAGGAGCCTGCCAAAAACGGTGAGCT
ACATCAAAGCTCTCTCGCTCTGCTTAATTACATATAACAAAGCTTGTTAC
CTCTAACAGTGGTGTTTTACCAAGTGTAGGATGTTCTTTCCACGCTTTTA
ATTGTGTCTACCCCCATCTAAACTTCTGCGCGGAGCAATTCACCCAAGTC
AGTCTCCCAGCTCTGAACGGGAAACACACGAATGTGAAATACGGGACGTG
CCCGAGGTTGACGTGCCCGAGGTTATAAGGGTCATGGAAAATCAAGCGTT
TTAGGGTTGCGTCGAATACGGTCGGCGTATCTACTGATGGGTTGAAAAAG
ACTTCTTCGGATGTCATCGACGTAGCTAATATTGGAAAAGAGCAATAGTA
AGAAGCCAAGCCCTGACTCCCGCAAAAGATGTCTGATAAACGTGGACAAT
ACGGACTCAACTTACGCCATTGAACCCATTACTGTCGACCAAATCAACAC
TTGATACTCTCGGAAAGTGACGCGGGTCTCCTACCTGCTCACGTTAGCGT
CGAGCAAGAAACAACGCGGGCATTGACACAGTTCAGGTGCTTTACTAGTA
CACTATACCCAGTAACTGCAATTAGTGTGGGTTACACTATTTACGGTGAG
ATATTTCGTTCTTTGGACACCTGTACCGATAATATTGTGAAAGAGAATCG
CTCTGTAATACCTTGGTTGGGCAGATTTGTCTTTACAATGAGCTAATCAT
TCAAAGCCTTGGTAGGCCTGTCACTTTAAGGTTCACTATACTGAAACTAA
TGGCTTCAGCGTCGTTTTCAAAGAACCTCTTGGGCTCACTATACTGAACC
TTGCACGTGTTACAATATTACTAACCGAGACTCTTTGAGGTCTGTTGGGT
AACACAGACTAAACGGATGTCCCACAAAAGGTAGTGACAGCATCTCTTCC
TCCTCCTGTGAGTTACCAATGTCGGGCACGATATGGACCGATGAGGGTAT
AAGGGGAAGTGGTGGGAGCTGATTCGCACCCTTTCGCACTATACTTACTG
CGTCGGAGAGTGGTTTGCACTCGCTGGCGGTCATAGTTCAGAATGCTGTT
GATTACCGCTGTGCTCTCGTTCTGCAGTATACGCTTCAGCTGTGACGCCG
TTCGGCGGTTGTGCGGCGCTGCCTTTTCCTTGTGTATCTGCAGACAACTG
TACATTCTAAGTATACTATTCTGATTCTAACATGTGTATTCAGACCGACA
ACACCGTCGAGTTCCATGCAACATGGAGTTCCACAGCAACGGGGTTCTAC
ACCCTTTAGTATCCACTCTTACTTCCATTCTGGCACTAAGGTTACCTTTG
AATCAATGTAGTTCCGTTTTGGTGTTCGTCCCGACGTCAAAGCCCCTTCT
TTGTCAAAGAGAAGGCCATGTGGTGCTGGGTTCAGGCATCATGAGACGAA
GCTAAACAGCTCCAAAGTATTCAACACTAGTATTCAGTGGCTGATCCGGT
GTTTTTCGGAAGGACCAAGAAGTGCAGACAATGTTGCCGAGTCCCTCACA
TCCGTCATCCGTGTGGTAACCAAGAAGCCAGACAGTTTTTTTACCCAGAA
TTGCTTCCTCACATTCTTCAACAGCACCACAAGAGTCTCAGCTCGGCAAA
CTACGTTCATCTCAGTCGCTCTCTACTACCTCAAAAGTTCAGAATGGAAA
GCTTTGCATGCGTTCAAACTGGTTCCATGGAAGAACAGATTGTTTCCGTC
CCCCCAGGTGTTTATGGACGTTCTCTTGGAAGAAAGGAATTCGTCACTCC
TACCCCCCGTGACGAGTCAAACGGCGCCCGAATTCCGTGTTCGCCAGAGG
CGTTTCTTTACCCATTTGTCGACAACGGAGTTCTAGACATCTTTGTCGAC
AACAAAGATTACGAGTTGAAAAACTCCGTCAGAAGGCTTCGTTTCGTAGT
GGCGGCAGAGATTGTGGGAAATCTGCTGGAACCTGTGTCTATGCCAGTCA
GGTTGCCGTCGCCCACACAGAATTGCGAAACAGCTGTTTGCACGACCCGG
AATATCAGCTGCGTCGCAAAGTTAGTCGCCGAGCCACCAGTTGGCCGTCG
CGTCGAACATCTTGGGCAGACCCAAGAGAGGAAAGAAAGCAACGCGCATG
GGTTGAAAGAGGCAGCCATGGAAGGAGCAGGCGGCGTTCGGAAGAGTAGA
CTCGCAGTTAGCGGGCGCTACAGACACGGGTATGACGGGGTGGATTTCGC
ATTGGAGCCCATAACGCCGCCTATGGCGGGTCAAGGCGTACTGTTACCCG
TAGAGGGAAACGGCGTCACAGAACATGCAGGTTCTGTTCGGTCTCGGAAG
CTGTTTAAGAAGTTTTCTCGGCCTGAAGGGAGGCAAAGCAAAATGGGGGT
TTCGGGGGCTTGTGAATTGAAAATCTACATGACCCTGTGA
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Coding sequence (CDS) from alignment at tig00000879_pilon:402845..405284-

>Ggra6281.t1 ID=Ggra6281.t1|Name=Ggra6281.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=927bp|location=Sequence derived from alignment at tig00000879_pilon:402845..405284- (Gracilaria gracilis GNS1m male)
ATGATATCTGCAACCGTGCTCACCAAGGAGCCTGCCAAAAACGGATGTTC
TTTCCACGCTTTTAATTGTGTCTACCCCCATCTAAACTTCTGCGCGGAGC
AATTCACCCAACACCACAAGAGTCTCAGCTCGGCAAACTACGTTCATCTC
AGTCGCTCTCTACTACCTCAAAAGTTCAGAATGGAAAGCTTTGCATGCGT
TCAAACTGGTTCCATGGAAGAACAGATTGTTTCCGTCCCCCCAGGTGTTT
ATGGACGTTCTCTTGGAAGAAAGGAATTCGTCACTCCTACCCCCCGTGAC
GAGTCAAACGGCGCCCGAATTCCGTGTTCGCCAGAGGCGTTTCTTTACCC
ATTTGTCGACAACGGAGTTCTAGACATCTTTGTCGACAACAAAGATTACG
AGTTGAAAAACTCCGTCAGAAGGCTTCGTTTCGTAGTGGCGGCAGAGATT
GTGGGAAATCTGCTGGAACCTGTGTCTATGCCAGTCAGGTTGCCGTCGCC
CACACAGAATTGCGAAACAGCTGTTTGCACGACCCGGAATATCAGCTGCG
TCGCAAAGTTAGTCGCCGAGCCACCAGTTGGCCGTCGCGTCGAACATCTT
GGGCAGACCCAAGAGAGGAAAGAAAGCAACGCGCATGGGTTGAAAGAGGC
AGCCATGGAAGGAGCAGGCGGCGTTCGGAAGAGTAGACTCGCAGTTAGCG
GGCGCTACAGACACGGGTATGACGGGGTGGATTTCGCATTGGAGCCCATA
ACGCCGCCTATGGCGGGTCAAGGCGTACTGTTACCCGTAGAGGGAAACGG
CGTCACAGAACATGCAGGTTCTGTTCGGTCTCGGAAGCTGTTTAAGAAGT
TTTCTCGGCCTGAAGGGAGGCAAAGCAAAATGGGGGTTTCGGGGGCTTGT
GAATTGAAAATCTACATGACCCTGTGA
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