Ggra628.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra628.t1
Unique NameGgra628.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length368
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000895_piloncontigtig00000895_pilon:140230..141333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7159.AAEL001348-PA
PFAMsNAM-associated
Max annot lvl33208|Metazoa
Evalue9.72e-05
EggNOG OGs2E0VH@1|root,2S88Z@2759|Eukaryota,3AQGJ@33154|Opisthokonta,3C710@33208|Metazoa,3DN0Z@33213|Bilateria,42CR0@6656|Arthropoda,3SXGP@50557|Insecta,459QR@7147|Diptera,45KT0@7148|Nematocera
DescriptionConserved hypothetical protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra628Ggra628Gracilaria gracilis GNS1m malegenetig00000895_pilon 140230..141333 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra628.t1.stop1Ggra628.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000895_pilon 140230..140232 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra628.t1.CDS1Ggra628.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000895_pilon 140230..141333 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra628.t1.exon1Ggra628.t1.exon1Gracilaria gracilis GNS1m maleexontig00000895_pilon 140230..141333 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra628.t1.start1Ggra628.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000895_pilon 141331..141333 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra628.t1Ggra628.t1Gracilaria gracilis GNS1m malepolypeptidetig00000895_pilon 140230..141333 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra628.t1 ID=Ggra628.t1|Name=Ggra628.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=368bp
MGSGKGWSVIETKSACRAFIAASEDPLSGAENKREKFLGQIETAYKLLIE
EYKETDNKAIFFVRTGSAIAQRYKKARCECIKFEGIVMSIQAKRPTGSPT
EHDIVRAATAVYNGQANISNMYSYFQDSPLEYGDKFVFLDALTFFRNTNQ
WEMLMSSKKPVNREETVEKTGSDNRGHGGVESGIDRNGSNSGKDEHEEPK
ERPSHNYGLNGTGIVGSSKRAHFMANQVKALQRGAEGIEELARAAKRRNT
VAEVFLAVERQKSMFTFFSLPDVDVEMRKKYMNAVAQKALAEVEKAAALQ
DQDSLPYHVPNSSSFMQPEESDTVRIETSSSRSAQGAATPTKSSVRDPPS
AANDVHCETGDSSTHQG*
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spliced messenger RNA

>Ggra628.t1 ID=Ggra628.t1|Name=Ggra628.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1104bp|location=Sequence derived from alignment at tig00000895_pilon:140230..141333- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTCCGGCAAAGGCTGGTCTGTGATTGAAACAAAGAGTGCCTGTCG
CGCATTCATTGCAGCTTCTGAAGACCCTCTTTCTGGCGCGGAAAATAAGC
GTGAAAAGTTCTTGGGACAGATTGAAACCGCATATAAGCTTCTAATTGAA
GAATACAAGGAGACCGACAACAAAGCGATATTCTTTGTACGTACTGGCAG
TGCAATCGCGCAAAGGTATAAGAAGGCCCGTTGTGAATGTATCAAATTCG
AAGGAATTGTCATGTCGATTCAAGCCAAGCGCCCCACTGGTTCACCAACT
GAACATGACATTGTGCGAGCAGCCACTGCTGTCTACAACGGTCAAGCAAA
CATCAGCAATATGTACAGTTACTTTCAGGATTCACCACTCGAATATGGTG
ATAAGTTTGTGTTTCTGGATGCTCTGACGTTCTTTCGCAACACAAACCAG
TGGGAGATGCTGATGTCCTCCAAGAAACCTGTGAACAGGGAAGAAACTGT
TGAAAAAACAGGGTCTGATAATAGAGGTCATGGCGGTGTAGAAAGCGGTA
TTGATAGAAACGGCAGTAACTCTGGTAAGGATGAACATGAAGAGCCCAAG
GAGCGTCCTTCTCATAATTACGGTTTGAATGGTACTGGAATTGTTGGTAG
TAGCAAAAGAGCACACTTTATGGCAAACCAAGTGAAGGCCTTACAGAGAG
GTGCTGAGGGAATTGAAGAACTGGCGAGAGCTGCGAAGAGGCGCAACACT
GTAGCTGAAGTGTTTCTAGCTGTTGAACGACAGAAGTCTATGTTTACGTT
CTTTTCTTTACCTGATGTTGATGTTGAAATGCGAAAGAAGTACATGAACG
CGGTTGCACAGAAGGCACTCGCCGAGGTTGAAAAGGCAGCGGCGCTACAG
GATCAGGATTCTCTGCCGTATCATGTCCCTAACAGCTCCTCTTTTATGCA
GCCAGAGGAGTCAGACACAGTGCGAATTGAAACATCTTCTTCCCGTAGCG
CACAGGGTGCTGCTACACCGACCAAATCCAGTGTTCGGGACCCTCCATCT
GCTGCAAACGACGTTCATTGCGAGACAGGAGATTCTTCGACGCACCAAGG
ATAG
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protein sequence of Ggra628.t1

>Ggra628.t1 ID=Ggra628.t1|Name=Ggra628.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=368bp
MGSGKGWSVIETKSACRAFIAASEDPLSGAENKREKFLGQIETAYKLLIE
EYKETDNKAIFFVRTGSAIAQRYKKARCECIKFEGIVMSIQAKRPTGSPT
EHDIVRAATAVYNGQANISNMYSYFQDSPLEYGDKFVFLDALTFFRNTNQ
WEMLMSSKKPVNREETVEKTGSDNRGHGGVESGIDRNGSNSGKDEHEEPK
ERPSHNYGLNGTGIVGSSKRAHFMANQVKALQRGAEGIEELARAAKRRNT
VAEVFLAVERQKSMFTFFSLPDVDVEMRKKYMNAVAQKALAEVEKAAALQ
DQDSLPYHVPNSSSFMQPEESDTVRIETSSSRSAQGAATPTKSSVRDPPS
AANDVHCETGDSSTHQG*
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mRNA from alignment at tig00000895_pilon:140230..141333-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra628.t1 ID=Ggra628.t1|Name=Ggra628.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1104bp|location=Sequence derived from alignment at tig00000895_pilon:140230..141333- (Gracilaria gracilis GNS1m male)
ATGGGCTCCGGCAAAGGCTGGTCTGTGATTGAAACAAAGAGTGCCTGTCG
CGCATTCATTGCAGCTTCTGAAGACCCTCTTTCTGGCGCGGAAAATAAGC
GTGAAAAGTTCTTGGGACAGATTGAAACCGCATATAAGCTTCTAATTGAA
GAATACAAGGAGACCGACAACAAAGCGATATTCTTTGTACGTACTGGCAG
TGCAATCGCGCAAAGGTATAAGAAGGCCCGTTGTGAATGTATCAAATTCG
AAGGAATTGTCATGTCGATTCAAGCCAAGCGCCCCACTGGTTCACCAACT
GAACATGACATTGTGCGAGCAGCCACTGCTGTCTACAACGGTCAAGCAAA
CATCAGCAATATGTACAGTTACTTTCAGGATTCACCACTCGAATATGGTG
ATAAGTTTGTGTTTCTGGATGCTCTGACGTTCTTTCGCAACACAAACCAG
TGGGAGATGCTGATGTCCTCCAAGAAACCTGTGAACAGGGAAGAAACTGT
TGAAAAAACAGGGTCTGATAATAGAGGTCATGGCGGTGTAGAAAGCGGTA
TTGATAGAAACGGCAGTAACTCTGGTAAGGATGAACATGAAGAGCCCAAG
GAGCGTCCTTCTCATAATTACGGTTTGAATGGTACTGGAATTGTTGGTAG
TAGCAAAAGAGCACACTTTATGGCAAACCAAGTGAAGGCCTTACAGAGAG
GTGCTGAGGGAATTGAAGAACTGGCGAGAGCTGCGAAGAGGCGCAACACT
GTAGCTGAAGTGTTTCTAGCTGTTGAACGACAGAAGTCTATGTTTACGTT
CTTTTCTTTACCTGATGTTGATGTTGAAATGCGAAAGAAGTACATGAACG
CGGTTGCACAGAAGGCACTCGCCGAGGTTGAAAAGGCAGCGGCGCTACAG
GATCAGGATTCTCTGCCGTATCATGTCCCTAACAGCTCCTCTTTTATGCA
GCCAGAGGAGTCAGACACAGTGCGAATTGAAACATCTTCTTCCCGTAGCG
CACAGGGTGCTGCTACACCGACCAAATCCAGTGTTCGGGACCCTCCATCT
GCTGCAAACGACGTTCATTGCGAGACAGGAGATTCTTCGACGCACCAAGG
ATAG
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Coding sequence (CDS) from alignment at tig00000895_pilon:140230..141333-

>Ggra628.t1 ID=Ggra628.t1|Name=Ggra628.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1104bp|location=Sequence derived from alignment at tig00000895_pilon:140230..141333- (Gracilaria gracilis GNS1m male)
ATGGGCTCCGGCAAAGGCTGGTCTGTGATTGAAACAAAGAGTGCCTGTCG
CGCATTCATTGCAGCTTCTGAAGACCCTCTTTCTGGCGCGGAAAATAAGC
GTGAAAAGTTCTTGGGACAGATTGAAACCGCATATAAGCTTCTAATTGAA
GAATACAAGGAGACCGACAACAAAGCGATATTCTTTGTACGTACTGGCAG
TGCAATCGCGCAAAGGTATAAGAAGGCCCGTTGTGAATGTATCAAATTCG
AAGGAATTGTCATGTCGATTCAAGCCAAGCGCCCCACTGGTTCACCAACT
GAACATGACATTGTGCGAGCAGCCACTGCTGTCTACAACGGTCAAGCAAA
CATCAGCAATATGTACAGTTACTTTCAGGATTCACCACTCGAATATGGTG
ATAAGTTTGTGTTTCTGGATGCTCTGACGTTCTTTCGCAACACAAACCAG
TGGGAGATGCTGATGTCCTCCAAGAAACCTGTGAACAGGGAAGAAACTGT
TGAAAAAACAGGGTCTGATAATAGAGGTCATGGCGGTGTAGAAAGCGGTA
TTGATAGAAACGGCAGTAACTCTGGTAAGGATGAACATGAAGAGCCCAAG
GAGCGTCCTTCTCATAATTACGGTTTGAATGGTACTGGAATTGTTGGTAG
TAGCAAAAGAGCACACTTTATGGCAAACCAAGTGAAGGCCTTACAGAGAG
GTGCTGAGGGAATTGAAGAACTGGCGAGAGCTGCGAAGAGGCGCAACACT
GTAGCTGAAGTGTTTCTAGCTGTTGAACGACAGAAGTCTATGTTTACGTT
CTTTTCTTTACCTGATGTTGATGTTGAAATGCGAAAGAAGTACATGAACG
CGGTTGCACAGAAGGCACTCGCCGAGGTTGAAAAGGCAGCGGCGCTACAG
GATCAGGATTCTCTGCCGTATCATGTCCCTAACAGCTCCTCTTTTATGCA
GCCAGAGGAGTCAGACACAGTGCGAATTGAAACATCTTCTTCCCGTAGCG
CACAGGGTGCTGCTACACCGACCAAATCCAGTGTTCGGGACCCTCCATCT
GCTGCAAACGACGTTCATTGCGAGACAGGAGATTCTTCGACGCACCAAGG
ATAG
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