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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 160860.XP_007343806.1 |
| PFAMs | AAA_19,UvrD-helicase,UvrD_C_2 |
| Max annot lvl | 4751|Fungi |
| Evalue | 2e-26 |
| EggNOG OGs | 29732@1|root,2RE2I@2759|Eukaryota,39TGH@33154|Opisthokonta,3NXXP@4751|Fungi,3V955@5204|Basidiomycota,227B1@155619|Agaricomycetes,3H3ST@355688|Agaricomycetes incertae sedis |
| Description | AAA domain |
| COG category | L |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra6279.t1.start1 | Ggra6279.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000879_pilon 396809..396811 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra6279.t1.stop1 | Ggra6279.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000879_pilon 399368..399370 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra6279.t1 ID=Ggra6279.t1|Name=Ggra6279.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=854bp MTPSNPAPVIPKTSQTHVLTDEQRAVVTAVANKGHNAIVNAVAGSGKTRT ALATARQWLSTRPVFTTPKPNVLLLAYNKRLSQDMVAQRDTLVPPPFRPS IHVRTIHGFGHRYFGGYGLTTDGELSQWTKSRKQPTRALPFFGLVIVDEA QDMTPILFDFLRHCMSLFSYRPQLLVLGDPFQLLYRFNGADEAYILEADC KFKDLAADAPFEHFKLSICFRITHEMATWINENLNPNNLHRALAPFPTWF EQHKENIERWWGEGIQANPRRPPSPGSVIYYRRPPHDDMSYADALGGVVE KVVTVFENYDTDSSALLSPFISSHPYSPVRLITNELSLVYGVEQSWFIDD SREANDPSSVAVRRNKRVASTIHKFKGRESDAIVLVGLDSFAELVEKSDP RNVFNMFYVGATRARKQLLIVQWSEPAYATHKSRVNNVEEDSYEPQPCRI TKALEYCPYNETLCEQSPESLQAKMKYTIPPISLGRQDYLVSGAHTPQRL STVENVSAIIGLAVEVRLQLLLDDGRLEVPPASDVDHEMPMDLQVFLSQL KAQATTPRSYSWAKVLEIATAFLTKADQLYYRWRQVRNFESWPLVRRPAK LNEVVRNLVQLLDIVCGGSGAEATVGVSNLEATLEYEGMLTRLKGLRKEL RILFHDVFEFGMGSNMKFVERCAPSLIGEPDIIVLSKEEAERLQKWKDGL RSRKYQLLNSTGKSDDDNKAHLAIEEGNGDGITLVEVKVTSRTSHDHLLQ VGCYGAMQREMRLARRAQRMKRSLKAVERDVTMPRMFVAYPSLGYLKQVD LHMDSFEFLHRVGCRKINLPYDTVEIARPDQEPMVNEPPQQMGILSQEMP DVL* back to topspliced messenger RNA >Ggra6279.t1 ID=Ggra6279.t1|Name=Ggra6279.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2562bp|location=Sequence derived from alignment at tig00000879_pilon:396809..399370+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGACTCCCTCAAACCCCGCCCCTGTTATTCCCAAAACTTCCCAAACGCA CGTCTTGACCGATGAACAAAGAGCCGTAGTCACCGCCGTAGCAAACAAGG GTCATAACGCGATCGTCAACGCCGTGGCCGGGTCAGGAAAGACCAGGACA GCGCTAGCCACTGCTAGACAATGGCTCAGCACGCGGCCAGTTTTCACTAC ACCAAAGCCGAATGTGCTGCTCTTGGCCTATAACAAGCGCCTATCGCAGG ACATGGTGGCTCAACGTGACACATTAGTGCCTCCGCCATTTCGACCTTCC ATCCACGTTCGGACGATCCACGGCTTTGGACATCGGTACTTCGGTGGATA TGGGTTAACGACGGACGGAGAGCTATCGCAATGGACAAAAAGCAGGAAGC AGCCTACGAGAGCCCTTCCGTTCTTCGGACTAGTAATTGTGGACGAAGCG CAGGACATGACGCCCATTCTGTTTGACTTCTTGAGGCACTGTATGTCATT ATTCAGCTACCGGCCGCAGTTACTGGTCCTTGGCGATCCGTTTCAGTTGC TTTACCGCTTCAATGGCGCCGACGAGGCATACATCCTCGAAGCGGACTGC AAGTTTAAGGATCTTGCAGCGGACGCCCCTTTCGAGCATTTCAAGCTCTC CATTTGTTTCAGGATAACGCACGAGATGGCGACTTGGATCAATGAAAATC TAAACCCGAATAACCTGCACCGTGCCCTTGCGCCGTTCCCGACGTGGTTC GAGCAGCACAAGGAGAACATCGAGCGGTGGTGGGGAGAAGGAATCCAAGC AAATCCGAGGCGCCCGCCATCACCGGGGTCAGTAATATATTATAGGCGCC CTCCACATGACGATATGTCGTATGCAGATGCATTGGGAGGGGTTGTCGAG AAGGTCGTTACTGTTTTTGAGAACTATGATACGGATTCCTCCGCTTTGCT CTCTCCTTTCATCTCCTCCCACCCTTATAGTCCCGTCCGTCTCATCACCA ACGAGTTGAGTTTGGTCTATGGAGTCGAGCAGTCGTGGTTCATCGATGAC AGTCGCGAGGCTAACGATCCCTCTTCCGTCGCTGTGCGCCGCAACAAACG CGTCGCTAGCACTATCCATAAGTTCAAAGGCCGCGAAAGTGACGCTATCG TCCTCGTTGGCCTTGATAGCTTCGCAGAGCTCGTCGAAAAAAGCGACCCG CGTAATGTGTTCAACATGTTCTACGTCGGCGCCACCCGTGCAAGAAAGCA GCTGCTCATTGTGCAGTGGTCGGAGCCGGCCTACGCTACGCATAAATCCC GTGTAAACAACGTGGAGGAAGACAGCTATGAGCCTCAGCCGTGCCGTATC ACAAAAGCGCTCGAATACTGTCCATACAACGAGACGCTATGCGAGCAGTC GCCGGAATCCCTGCAGGCGAAGATGAAGTACACGATCCCTCCTATCTCCC TCGGCCGCCAAGATTATTTGGTAAGCGGCGCACATACTCCACAGCGCCTA AGCACGGTGGAGAACGTCTCAGCCATCATCGGGCTGGCTGTGGAAGTGCG GCTCCAGCTGCTCCTCGACGATGGCAGGTTGGAGGTTCCACCCGCAAGTG ATGTTGATCACGAGATGCCAATGGACCTGCAAGTCTTTCTCTCACAGCTA AAGGCGCAAGCGACAACACCGCGGTCCTATTCCTGGGCGAAGGTGCTGGA AATTGCGACAGCCTTCTTAACGAAGGCAGATCAACTGTACTATCGCTGGA GGCAGGTGCGTAACTTTGAAAGCTGGCCGCTCGTGAGACGTCCAGCAAAG CTGAATGAAGTGGTTCGCAACCTGGTACAGTTGTTAGACATAGTGTGTGG GGGGAGCGGCGCTGAAGCGACGGTAGGTGTGAGCAATTTAGAAGCCACAC TGGAGTATGAAGGTATGTTGACGCGGCTGAAGGGCCTTCGAAAGGAACTA AGGATATTGTTCCATGATGTGTTCGAGTTTGGTATGGGAAGCAATATGAA GTTTGTGGAGCGATGTGCACCAAGTCTAATAGGTGAGCCGGACATCATCG TTCTTTCTAAGGAGGAAGCGGAACGGTTGCAGAAATGGAAAGATGGATTG AGAAGTCGAAAGTATCAACTTCTCAATTCGACTGGAAAGAGCGATGACGA TAATAAAGCTCACTTAGCTATTGAGGAAGGGAACGGAGATGGAATTACAC TTGTTGAAGTAAAGGTGACGTCAAGGACGAGCCACGATCACTTGTTACAG GTGGGGTGCTACGGTGCGATGCAGCGTGAGATGCGACTGGCGAGACGGGC GCAACGTATGAAGCGGTCGTTGAAGGCGGTGGAGAGAGATGTTACAATGC CCAGGATGTTTGTGGCATATCCGAGTCTCGGGTATCTGAAGCAGGTGGAC TTACACATGGACTCGTTTGAGTTTCTGCATCGCGTGGGATGCAGAAAGAT CAACCTTCCGTATGATACTGTTGAAATAGCGCGTCCTGATCAAGAGCCAA TGGTGAACGAGCCACCCCAGCAAATGGGCATTCTGTCGCAGGAGATGCCC GACGTATTATAA back to topprotein sequence of Ggra6279.t1 >Ggra6279.t1 ID=Ggra6279.t1|Name=Ggra6279.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=854bp
MTPSNPAPVIPKTSQTHVLTDEQRAVVTAVANKGHNAIVNAVAGSGKTRT ALATARQWLSTRPVFTTPKPNVLLLAYNKRLSQDMVAQRDTLVPPPFRPS IHVRTIHGFGHRYFGGYGLTTDGELSQWTKSRKQPTRALPFFGLVIVDEA QDMTPILFDFLRHCMSLFSYRPQLLVLGDPFQLLYRFNGADEAYILEADC KFKDLAADAPFEHFKLSICFRITHEMATWINENLNPNNLHRALAPFPTWF EQHKENIERWWGEGIQANPRRPPSPGSVIYYRRPPHDDMSYADALGGVVE KVVTVFENYDTDSSALLSPFISSHPYSPVRLITNELSLVYGVEQSWFIDD SREANDPSSVAVRRNKRVASTIHKFKGRESDAIVLVGLDSFAELVEKSDP RNVFNMFYVGATRARKQLLIVQWSEPAYATHKSRVNNVEEDSYEPQPCRI TKALEYCPYNETLCEQSPESLQAKMKYTIPPISLGRQDYLVSGAHTPQRL STVENVSAIIGLAVEVRLQLLLDDGRLEVPPASDVDHEMPMDLQVFLSQL KAQATTPRSYSWAKVLEIATAFLTKADQLYYRWRQVRNFESWPLVRRPAK LNEVVRNLVQLLDIVCGGSGAEATVGVSNLEATLEYEGMLTRLKGLRKEL RILFHDVFEFGMGSNMKFVERCAPSLIGEPDIIVLSKEEAERLQKWKDGL RSRKYQLLNSTGKSDDDNKAHLAIEEGNGDGITLVEVKVTSRTSHDHLLQ VGCYGAMQREMRLARRAQRMKRSLKAVERDVTMPRMFVAYPSLGYLKQVD LHMDSFEFLHRVGCRKINLPYDTVEIARPDQEPMVNEPPQQMGILSQEMP DVL* back to topmRNA from alignment at tig00000879_pilon:396809..399370+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra6279.t1 ID=Ggra6279.t1|Name=Ggra6279.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2562bp|location=Sequence derived from alignment at tig00000879_pilon:396809..399370+ (Gracilaria gracilis GNS1m male) ATGACTCCCTCAAACCCCGCCCCTGTTATTCCCAAAACTTCCCAAACGCA
CGTCTTGACCGATGAACAAAGAGCCGTAGTCACCGCCGTAGCAAACAAGG
GTCATAACGCGATCGTCAACGCCGTGGCCGGGTCAGGAAAGACCAGGACA
GCGCTAGCCACTGCTAGACAATGGCTCAGCACGCGGCCAGTTTTCACTAC
ACCAAAGCCGAATGTGCTGCTCTTGGCCTATAACAAGCGCCTATCGCAGG
ACATGGTGGCTCAACGTGACACATTAGTGCCTCCGCCATTTCGACCTTCC
ATCCACGTTCGGACGATCCACGGCTTTGGACATCGGTACTTCGGTGGATA
TGGGTTAACGACGGACGGAGAGCTATCGCAATGGACAAAAAGCAGGAAGC
AGCCTACGAGAGCCCTTCCGTTCTTCGGACTAGTAATTGTGGACGAAGCG
CAGGACATGACGCCCATTCTGTTTGACTTCTTGAGGCACTGTATGTCATT
ATTCAGCTACCGGCCGCAGTTACTGGTCCTTGGCGATCCGTTTCAGTTGC
TTTACCGCTTCAATGGCGCCGACGAGGCATACATCCTCGAAGCGGACTGC
AAGTTTAAGGATCTTGCAGCGGACGCCCCTTTCGAGCATTTCAAGCTCTC
CATTTGTTTCAGGATAACGCACGAGATGGCGACTTGGATCAATGAAAATC
TAAACCCGAATAACCTGCACCGTGCCCTTGCGCCGTTCCCGACGTGGTTC
GAGCAGCACAAGGAGAACATCGAGCGGTGGTGGGGAGAAGGAATCCAAGC
AAATCCGAGGCGCCCGCCATCACCGGGGTCAGTAATATATTATAGGCGCC
CTCCACATGACGATATGTCGTATGCAGATGCATTGGGAGGGGTTGTCGAG
AAGGTCGTTACTGTTTTTGAGAACTATGATACGGATTCCTCCGCTTTGCT
CTCTCCTTTCATCTCCTCCCACCCTTATAGTCCCGTCCGTCTCATCACCA
ACGAGTTGAGTTTGGTCTATGGAGTCGAGCAGTCGTGGTTCATCGATGAC
AGTCGCGAGGCTAACGATCCCTCTTCCGTCGCTGTGCGCCGCAACAAACG
CGTCGCTAGCACTATCCATAAGTTCAAAGGCCGCGAAAGTGACGCTATCG
TCCTCGTTGGCCTTGATAGCTTCGCAGAGCTCGTCGAAAAAAGCGACCCG
CGTAATGTGTTCAACATGTTCTACGTCGGCGCCACCCGTGCAAGAAAGCA
GCTGCTCATTGTGCAGTGGTCGGAGCCGGCCTACGCTACGCATAAATCCC
GTGTAAACAACGTGGAGGAAGACAGCTATGAGCCTCAGCCGTGCCGTATC
ACAAAAGCGCTCGAATACTGTCCATACAACGAGACGCTATGCGAGCAGTC
GCCGGAATCCCTGCAGGCGAAGATGAAGTACACGATCCCTCCTATCTCCC
TCGGCCGCCAAGATTATTTGGTAAGCGGCGCACATACTCCACAGCGCCTA
AGCACGGTGGAGAACGTCTCAGCCATCATCGGGCTGGCTGTGGAAGTGCG
GCTCCAGCTGCTCCTCGACGATGGCAGGTTGGAGGTTCCACCCGCAAGTG
ATGTTGATCACGAGATGCCAATGGACCTGCAAGTCTTTCTCTCACAGCTA
AAGGCGCAAGCGACAACACCGCGGTCCTATTCCTGGGCGAAGGTGCTGGA
AATTGCGACAGCCTTCTTAACGAAGGCAGATCAACTGTACTATCGCTGGA
GGCAGGTGCGTAACTTTGAAAGCTGGCCGCTCGTGAGACGTCCAGCAAAG
CTGAATGAAGTGGTTCGCAACCTGGTACAGTTGTTAGACATAGTGTGTGG
GGGGAGCGGCGCTGAAGCGACGGTAGGTGTGAGCAATTTAGAAGCCACAC
TGGAGTATGAAGGTATGTTGACGCGGCTGAAGGGCCTTCGAAAGGAACTA
AGGATATTGTTCCATGATGTGTTCGAGTTTGGTATGGGAAGCAATATGAA
GTTTGTGGAGCGATGTGCACCAAGTCTAATAGGTGAGCCGGACATCATCG
TTCTTTCTAAGGAGGAAGCGGAACGGTTGCAGAAATGGAAAGATGGATTG
AGAAGTCGAAAGTATCAACTTCTCAATTCGACTGGAAAGAGCGATGACGA
TAATAAAGCTCACTTAGCTATTGAGGAAGGGAACGGAGATGGAATTACAC
TTGTTGAAGTAAAGGTGACGTCAAGGACGAGCCACGATCACTTGTTACAG
GTGGGGTGCTACGGTGCGATGCAGCGTGAGATGCGACTGGCGAGACGGGC
GCAACGTATGAAGCGGTCGTTGAAGGCGGTGGAGAGAGATGTTACAATGC
CCAGGATGTTTGTGGCATATCCGAGTCTCGGGTATCTGAAGCAGGTGGAC
TTACACATGGACTCGTTTGAGTTTCTGCATCGCGTGGGATGCAGAAAGAT
CAACCTTCCGTATGATACTGTTGAAATAGCGCGTCCTGATCAAGAGCCAA
TGGTGAACGAGCCACCCCAGCAAATGGGCATTCTGTCGCAGGAGATGCCC
GACGTATTATAA back to topCoding sequence (CDS) from alignment at tig00000879_pilon:396809..399370+ >Ggra6279.t1 ID=Ggra6279.t1|Name=Ggra6279.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2562bp|location=Sequence derived from alignment at tig00000879_pilon:396809..399370+ (Gracilaria gracilis GNS1m male) ATGACTCCCTCAAACCCCGCCCCTGTTATTCCCAAAACTTCCCAAACGCA CGTCTTGACCGATGAACAAAGAGCCGTAGTCACCGCCGTAGCAAACAAGG GTCATAACGCGATCGTCAACGCCGTGGCCGGGTCAGGAAAGACCAGGACA GCGCTAGCCACTGCTAGACAATGGCTCAGCACGCGGCCAGTTTTCACTAC ACCAAAGCCGAATGTGCTGCTCTTGGCCTATAACAAGCGCCTATCGCAGG ACATGGTGGCTCAACGTGACACATTAGTGCCTCCGCCATTTCGACCTTCC ATCCACGTTCGGACGATCCACGGCTTTGGACATCGGTACTTCGGTGGATA TGGGTTAACGACGGACGGAGAGCTATCGCAATGGACAAAAAGCAGGAAGC AGCCTACGAGAGCCCTTCCGTTCTTCGGACTAGTAATTGTGGACGAAGCG CAGGACATGACGCCCATTCTGTTTGACTTCTTGAGGCACTGTATGTCATT ATTCAGCTACCGGCCGCAGTTACTGGTCCTTGGCGATCCGTTTCAGTTGC TTTACCGCTTCAATGGCGCCGACGAGGCATACATCCTCGAAGCGGACTGC AAGTTTAAGGATCTTGCAGCGGACGCCCCTTTCGAGCATTTCAAGCTCTC CATTTGTTTCAGGATAACGCACGAGATGGCGACTTGGATCAATGAAAATC TAAACCCGAATAACCTGCACCGTGCCCTTGCGCCGTTCCCGACGTGGTTC GAGCAGCACAAGGAGAACATCGAGCGGTGGTGGGGAGAAGGAATCCAAGC AAATCCGAGGCGCCCGCCATCACCGGGGTCAGTAATATATTATAGGCGCC CTCCACATGACGATATGTCGTATGCAGATGCATTGGGAGGGGTTGTCGAG AAGGTCGTTACTGTTTTTGAGAACTATGATACGGATTCCTCCGCTTTGCT CTCTCCTTTCATCTCCTCCCACCCTTATAGTCCCGTCCGTCTCATCACCA ACGAGTTGAGTTTGGTCTATGGAGTCGAGCAGTCGTGGTTCATCGATGAC AGTCGCGAGGCTAACGATCCCTCTTCCGTCGCTGTGCGCCGCAACAAACG CGTCGCTAGCACTATCCATAAGTTCAAAGGCCGCGAAAGTGACGCTATCG TCCTCGTTGGCCTTGATAGCTTCGCAGAGCTCGTCGAAAAAAGCGACCCG CGTAATGTGTTCAACATGTTCTACGTCGGCGCCACCCGTGCAAGAAAGCA GCTGCTCATTGTGCAGTGGTCGGAGCCGGCCTACGCTACGCATAAATCCC GTGTAAACAACGTGGAGGAAGACAGCTATGAGCCTCAGCCGTGCCGTATC ACAAAAGCGCTCGAATACTGTCCATACAACGAGACGCTATGCGAGCAGTC GCCGGAATCCCTGCAGGCGAAGATGAAGTACACGATCCCTCCTATCTCCC TCGGCCGCCAAGATTATTTGGTAAGCGGCGCACATACTCCACAGCGCCTA AGCACGGTGGAGAACGTCTCAGCCATCATCGGGCTGGCTGTGGAAGTGCG GCTCCAGCTGCTCCTCGACGATGGCAGGTTGGAGGTTCCACCCGCAAGTG ATGTTGATCACGAGATGCCAATGGACCTGCAAGTCTTTCTCTCACAGCTA AAGGCGCAAGCGACAACACCGCGGTCCTATTCCTGGGCGAAGGTGCTGGA AATTGCGACAGCCTTCTTAACGAAGGCAGATCAACTGTACTATCGCTGGA GGCAGGTGCGTAACTTTGAAAGCTGGCCGCTCGTGAGACGTCCAGCAAAG CTGAATGAAGTGGTTCGCAACCTGGTACAGTTGTTAGACATAGTGTGTGG GGGGAGCGGCGCTGAAGCGACGGTAGGTGTGAGCAATTTAGAAGCCACAC TGGAGTATGAAGGTATGTTGACGCGGCTGAAGGGCCTTCGAAAGGAACTA AGGATATTGTTCCATGATGTGTTCGAGTTTGGTATGGGAAGCAATATGAA GTTTGTGGAGCGATGTGCACCAAGTCTAATAGGTGAGCCGGACATCATCG TTCTTTCTAAGGAGGAAGCGGAACGGTTGCAGAAATGGAAAGATGGATTG AGAAGTCGAAAGTATCAACTTCTCAATTCGACTGGAAAGAGCGATGACGA TAATAAAGCTCACTTAGCTATTGAGGAAGGGAACGGAGATGGAATTACAC TTGTTGAAGTAAAGGTGACGTCAAGGACGAGCCACGATCACTTGTTACAG GTGGGGTGCTACGGTGCGATGCAGCGTGAGATGCGACTGGCGAGACGGGC GCAACGTATGAAGCGGTCGTTGAAGGCGGTGGAGAGAGATGTTACAATGC CCAGGATGTTTGTGGCATATCCGAGTCTCGGGTATCTGAAGCAGGTGGAC TTACACATGGACTCGTTTGAGTTTCTGCATCGCGTGGGATGCAGAAAGAT CAACCTTCCGTATGATACTGTTGAAATAGCGCGTCCTGATCAAGAGCCAA TGGTGAACGAGCCACCCCAGCAAATGGGCATTCTGTCGCAGGAGATGCCC GACGTATTATAA back to top
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