Ggra6277.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6277.t1
Unique NameGgra6277.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length521
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:392679..394241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8090.ENSORLP00000023883
Preferred nameCNDP2
PFAMsM20_dimer,Peptidase_M20
Max annot lvl33208|Metazoa
KEGG rclassRC00064,RC00090
KEGG koko:K08660
KEGG ReactionR01166,R01992
KEGG Pathwayko00330,ko00340,ko00410,ko01100,map00330,map00340,map00410,map01100
GOsGO:0003674,GO:0003824,GO:0004180,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006508,GO:0006518,GO:0006575,GO:0006749,GO:0006750,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0009058,GO:0009987,GO:0016787,GO:0016805,GO:0019184,GO:0019538,GO:0031974,GO:0031981,GO:0034641,GO:0042398,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0051186,GO:0051188,GO:0070011,GO:0070013,GO:0071704,GO:0140096,GO:1901564,GO:1901566,GO:1901576
Evalue1.01e-153
EggNOG OGsCOG0624@1|root,KOG2276@2759|Eukaryota,38D4S@33154|Opisthokonta,3BE18@33208|Metazoa,3CXPG@33213|Bilateria,485KK@7711|Chordata,48X3M@7742|Vertebrata,49YEH@7898|Actinopterygii
EC3.4.13.18
DescriptionCNDP dipeptidase 2 (metallopeptidase M20 family)
COG categoryE
BRITEko00000,ko00001,ko01000,ko01002,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6277Ggra6277Gracilaria gracilis GNS1m malegenetig00000879_pilon 392679..394241 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6277.t1.stop1Ggra6277.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 392679..392681 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6277.t1.CDS1Ggra6277.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 392679..394241 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6277.t1.exon1Ggra6277.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 392679..394241 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6277.t1.start1Ggra6277.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 394239..394241 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6277.t1Ggra6277.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 392679..394241 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6277.t1 ID=Ggra6277.t1|Name=Ggra6277.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=521bp
MTQSTEQSETLKNVDLFNEVRKLIASNGEVYITRLAEAVAIPSVSTELTK
RNACFQMADLLNKWIEDLGGKSEKVLVGFQELDDGQRYDLPPVILAEFEA
GSKQKPTVLVYGHYDVQPADKTDGWSSEPFTLTEKNEMLYGRGSTDDKGP
ILAWLWAVEIYRELELELPVNIKMCLEGMEESNSECLEDLLNREAKGNGF
LKGIDYVVVTDNYWLTTSKPCLTYGLRGIATFECEVRAGSQTLHSGVYGG
CIAEPMTDLTQLLSTVSRGVHGLVDIPGCRKEDCTPLEETEKELYNAITF
DSEDFMKEAGNVPSLVGDTPTEVLMNRWRYPSLSIHGIEGAYSGQGIKTV
IPGAVTGKFSIRLVPGQDGKLVEEEVTKLLEERFRELNTPNELRVTSSYS
EPWLADPKCPLYQAGAAALLKVYGVRPDYTREGGSIPITSMVEKILGVET
MLLPLGSSDDGAHSENEKIGRKNYINGVHVLFVLLDEIDRIHSNREDDTK
GGQTKKGALGRLKDIWFGLS*
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spliced messenger RNA

>Ggra6277.t1 ID=Ggra6277.t1|Name=Ggra6277.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1563bp|location=Sequence derived from alignment at tig00000879_pilon:392679..394241- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCAGAGCACAGAACAATCCGAAACTCTAAAGAACGTGGACCTTTT
CAATGAGGTTCGCAAACTTATCGCTTCAAATGGGGAGGTCTACATCACTC
GTCTTGCAGAGGCAGTCGCTATTCCATCCGTCTCCACAGAGCTAACAAAG
CGAAATGCTTGCTTTCAAATGGCAGACCTTCTGAACAAATGGATCGAAGA
CCTCGGAGGCAAGTCCGAGAAGGTGTTGGTCGGCTTCCAAGAATTGGACG
ATGGCCAGCGCTATGACCTTCCGCCTGTTATCCTTGCTGAATTCGAAGCA
GGGAGCAAACAGAAGCCCACTGTACTAGTATATGGCCATTACGATGTTCA
ACCTGCTGACAAAACTGATGGCTGGTCATCAGAACCTTTCACGCTGACTG
AAAAGAATGAAATGCTGTATGGACGAGGCAGCACTGACGATAAGGGCCCC
ATTTTGGCTTGGCTCTGGGCTGTTGAGATTTATCGAGAGCTGGAACTAGA
ATTGCCCGTCAACATTAAAATGTGTTTAGAGGGAATGGAGGAATCCAATA
GCGAATGCCTCGAGGACTTGCTGAATCGTGAGGCGAAGGGCAATGGATTC
TTGAAAGGTATCGATTATGTCGTCGTTACCGACAATTACTGGTTAACAAC
ATCAAAGCCGTGTCTTACTTACGGCTTGCGAGGAATTGCCACATTCGAAT
GCGAGGTTCGCGCAGGTTCCCAAACTCTTCATTCTGGAGTTTACGGAGGA
TGCATTGCAGAGCCTATGACTGATTTGACCCAGCTCCTGTCCACAGTCTC
AAGAGGTGTTCATGGATTGGTAGACATTCCTGGTTGTCGAAAAGAGGATT
GTACCCCTCTTGAAGAGACTGAGAAAGAACTGTATAACGCCATTACCTTC
GACAGCGAAGACTTCATGAAAGAGGCTGGAAATGTACCATCCTTGGTCGG
GGATACTCCAACCGAGGTTTTGATGAACAGATGGAGATATCCATCTTTGT
CCATACATGGTATCGAGGGTGCCTATTCTGGGCAAGGTATAAAAACGGTG
ATTCCGGGCGCCGTGACGGGGAAGTTCTCTATTCGGCTTGTGCCCGGACA
GGATGGGAAACTTGTGGAAGAAGAAGTGACCAAACTTCTGGAGGAGCGAT
TCCGTGAGCTGAACACTCCAAACGAACTGCGTGTCACAAGTTCATATTCA
GAGCCTTGGTTAGCTGATCCCAAGTGCCCACTCTATCAAGCTGGAGCGGC
AGCGCTTTTGAAGGTGTACGGAGTCCGCCCAGATTACACGAGGGAAGGGG
GCTCAATTCCAATCACGAGCATGGTGGAAAAGATCCTGGGTGTTGAGACA
ATGCTGTTACCGCTTGGGTCTTCAGATGATGGTGCTCATTCGGAGAATGA
AAAGATTGGTAGAAAGAACTACATTAATGGCGTGCATGTGTTGTTCGTGT
TGCTGGATGAGATTGACCGCATTCACAGCAATAGGGAAGACGATACTAAA
GGGGGGCAAACGAAGAAAGGTGCCCTTGGGAGGCTCAAAGACATTTGGTT
CGGATTGTCTTGA
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protein sequence of Ggra6277.t1

>Ggra6277.t1 ID=Ggra6277.t1|Name=Ggra6277.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=521bp
MTQSTEQSETLKNVDLFNEVRKLIASNGEVYITRLAEAVAIPSVSTELTK
RNACFQMADLLNKWIEDLGGKSEKVLVGFQELDDGQRYDLPPVILAEFEA
GSKQKPTVLVYGHYDVQPADKTDGWSSEPFTLTEKNEMLYGRGSTDDKGP
ILAWLWAVEIYRELELELPVNIKMCLEGMEESNSECLEDLLNREAKGNGF
LKGIDYVVVTDNYWLTTSKPCLTYGLRGIATFECEVRAGSQTLHSGVYGG
CIAEPMTDLTQLLSTVSRGVHGLVDIPGCRKEDCTPLEETEKELYNAITF
DSEDFMKEAGNVPSLVGDTPTEVLMNRWRYPSLSIHGIEGAYSGQGIKTV
IPGAVTGKFSIRLVPGQDGKLVEEEVTKLLEERFRELNTPNELRVTSSYS
EPWLADPKCPLYQAGAAALLKVYGVRPDYTREGGSIPITSMVEKILGVET
MLLPLGSSDDGAHSENEKIGRKNYINGVHVLFVLLDEIDRIHSNREDDTK
GGQTKKGALGRLKDIWFGLS*
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mRNA from alignment at tig00000879_pilon:392679..394241-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6277.t1 ID=Ggra6277.t1|Name=Ggra6277.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1563bp|location=Sequence derived from alignment at tig00000879_pilon:392679..394241- (Gracilaria gracilis GNS1m male)
ATGACGCAGAGCACAGAACAATCCGAAACTCTAAAGAACGTGGACCTTTT
CAATGAGGTTCGCAAACTTATCGCTTCAAATGGGGAGGTCTACATCACTC
GTCTTGCAGAGGCAGTCGCTATTCCATCCGTCTCCACAGAGCTAACAAAG
CGAAATGCTTGCTTTCAAATGGCAGACCTTCTGAACAAATGGATCGAAGA
CCTCGGAGGCAAGTCCGAGAAGGTGTTGGTCGGCTTCCAAGAATTGGACG
ATGGCCAGCGCTATGACCTTCCGCCTGTTATCCTTGCTGAATTCGAAGCA
GGGAGCAAACAGAAGCCCACTGTACTAGTATATGGCCATTACGATGTTCA
ACCTGCTGACAAAACTGATGGCTGGTCATCAGAACCTTTCACGCTGACTG
AAAAGAATGAAATGCTGTATGGACGAGGCAGCACTGACGATAAGGGCCCC
ATTTTGGCTTGGCTCTGGGCTGTTGAGATTTATCGAGAGCTGGAACTAGA
ATTGCCCGTCAACATTAAAATGTGTTTAGAGGGAATGGAGGAATCCAATA
GCGAATGCCTCGAGGACTTGCTGAATCGTGAGGCGAAGGGCAATGGATTC
TTGAAAGGTATCGATTATGTCGTCGTTACCGACAATTACTGGTTAACAAC
ATCAAAGCCGTGTCTTACTTACGGCTTGCGAGGAATTGCCACATTCGAAT
GCGAGGTTCGCGCAGGTTCCCAAACTCTTCATTCTGGAGTTTACGGAGGA
TGCATTGCAGAGCCTATGACTGATTTGACCCAGCTCCTGTCCACAGTCTC
AAGAGGTGTTCATGGATTGGTAGACATTCCTGGTTGTCGAAAAGAGGATT
GTACCCCTCTTGAAGAGACTGAGAAAGAACTGTATAACGCCATTACCTTC
GACAGCGAAGACTTCATGAAAGAGGCTGGAAATGTACCATCCTTGGTCGG
GGATACTCCAACCGAGGTTTTGATGAACAGATGGAGATATCCATCTTTGT
CCATACATGGTATCGAGGGTGCCTATTCTGGGCAAGGTATAAAAACGGTG
ATTCCGGGCGCCGTGACGGGGAAGTTCTCTATTCGGCTTGTGCCCGGACA
GGATGGGAAACTTGTGGAAGAAGAAGTGACCAAACTTCTGGAGGAGCGAT
TCCGTGAGCTGAACACTCCAAACGAACTGCGTGTCACAAGTTCATATTCA
GAGCCTTGGTTAGCTGATCCCAAGTGCCCACTCTATCAAGCTGGAGCGGC
AGCGCTTTTGAAGGTGTACGGAGTCCGCCCAGATTACACGAGGGAAGGGG
GCTCAATTCCAATCACGAGCATGGTGGAAAAGATCCTGGGTGTTGAGACA
ATGCTGTTACCGCTTGGGTCTTCAGATGATGGTGCTCATTCGGAGAATGA
AAAGATTGGTAGAAAGAACTACATTAATGGCGTGCATGTGTTGTTCGTGT
TGCTGGATGAGATTGACCGCATTCACAGCAATAGGGAAGACGATACTAAA
GGGGGGCAAACGAAGAAAGGTGCCCTTGGGAGGCTCAAAGACATTTGGTT
CGGATTGTCTTGA
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Coding sequence (CDS) from alignment at tig00000879_pilon:392679..394241-

>Ggra6277.t1 ID=Ggra6277.t1|Name=Ggra6277.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1563bp|location=Sequence derived from alignment at tig00000879_pilon:392679..394241- (Gracilaria gracilis GNS1m male)
ATGACGCAGAGCACAGAACAATCCGAAACTCTAAAGAACGTGGACCTTTT
CAATGAGGTTCGCAAACTTATCGCTTCAAATGGGGAGGTCTACATCACTC
GTCTTGCAGAGGCAGTCGCTATTCCATCCGTCTCCACAGAGCTAACAAAG
CGAAATGCTTGCTTTCAAATGGCAGACCTTCTGAACAAATGGATCGAAGA
CCTCGGAGGCAAGTCCGAGAAGGTGTTGGTCGGCTTCCAAGAATTGGACG
ATGGCCAGCGCTATGACCTTCCGCCTGTTATCCTTGCTGAATTCGAAGCA
GGGAGCAAACAGAAGCCCACTGTACTAGTATATGGCCATTACGATGTTCA
ACCTGCTGACAAAACTGATGGCTGGTCATCAGAACCTTTCACGCTGACTG
AAAAGAATGAAATGCTGTATGGACGAGGCAGCACTGACGATAAGGGCCCC
ATTTTGGCTTGGCTCTGGGCTGTTGAGATTTATCGAGAGCTGGAACTAGA
ATTGCCCGTCAACATTAAAATGTGTTTAGAGGGAATGGAGGAATCCAATA
GCGAATGCCTCGAGGACTTGCTGAATCGTGAGGCGAAGGGCAATGGATTC
TTGAAAGGTATCGATTATGTCGTCGTTACCGACAATTACTGGTTAACAAC
ATCAAAGCCGTGTCTTACTTACGGCTTGCGAGGAATTGCCACATTCGAAT
GCGAGGTTCGCGCAGGTTCCCAAACTCTTCATTCTGGAGTTTACGGAGGA
TGCATTGCAGAGCCTATGACTGATTTGACCCAGCTCCTGTCCACAGTCTC
AAGAGGTGTTCATGGATTGGTAGACATTCCTGGTTGTCGAAAAGAGGATT
GTACCCCTCTTGAAGAGACTGAGAAAGAACTGTATAACGCCATTACCTTC
GACAGCGAAGACTTCATGAAAGAGGCTGGAAATGTACCATCCTTGGTCGG
GGATACTCCAACCGAGGTTTTGATGAACAGATGGAGATATCCATCTTTGT
CCATACATGGTATCGAGGGTGCCTATTCTGGGCAAGGTATAAAAACGGTG
ATTCCGGGCGCCGTGACGGGGAAGTTCTCTATTCGGCTTGTGCCCGGACA
GGATGGGAAACTTGTGGAAGAAGAAGTGACCAAACTTCTGGAGGAGCGAT
TCCGTGAGCTGAACACTCCAAACGAACTGCGTGTCACAAGTTCATATTCA
GAGCCTTGGTTAGCTGATCCCAAGTGCCCACTCTATCAAGCTGGAGCGGC
AGCGCTTTTGAAGGTGTACGGAGTCCGCCCAGATTACACGAGGGAAGGGG
GCTCAATTCCAATCACGAGCATGGTGGAAAAGATCCTGGGTGTTGAGACA
ATGCTGTTACCGCTTGGGTCTTCAGATGATGGTGCTCATTCGGAGAATGA
AAAGATTGGTAGAAAGAACTACATTAATGGCGTGCATGTGTTGTTCGTGT
TGCTGGATGAGATTGACCGCATTCACAGCAATAGGGAAGACGATACTAAA
GGGGGGCAAACGAAGAAAGGTGCCCTTGGGAGGCTCAAAGACATTTGGTT
CGGATTGTCTTGA
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