Ggra6276.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6276.t1
Unique NameGgra6276.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length406
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:389564..390781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703053.1
PFAMsFerrochelatase
Max annot lvl2759|Eukaryota
KEGG rclassRC01012
KEGG koko:K01772
KEGG ReactionR00310,R11329
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
KEGG ModuleM00121
Evalue1.87e-156
EggNOG OGsCOG0276@1|root,KOG1321@2759|Eukaryota
EC4.99.1.1,4.99.1.9
Descriptionferrochelatase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6276Ggra6276Gracilaria gracilis GNS1m malegenetig00000879_pilon 389564..390781 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6276.t1.stop1Ggra6276.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 389564..389566 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6276.t1.CDS1Ggra6276.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 389564..390781 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6276.t1.exon1Ggra6276.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 389564..390781 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6276.t1.start1Ggra6276.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 390779..390781 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6276.t1Ggra6276.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 389564..390781 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6276.t1 ID=Ggra6276.t1|Name=Ggra6276.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=406bp
MAFVTPTPFRSRVAQRKQQVSSRRPVLATALEPKTAVAPKLDRQVELGKE
VSPPFIGRTGILLVNIGTPASLSVPDVREYLRQFLGDSRVVDLNPIVKWF
VLNLFILRTRPKESAEAYSNIWDEERGSPLLYHSEDMAAKLQSALGEKYA
VAVGMQYCQPNVYDVMEDLRAKGTDRLIVVPMYPQYASSATGAAIEIVYK
AAAKVYSTPYLHIVPAFYDHPSYISSYAAIIKRTIGERCENYDHLLMSFH
GVPQTHCERTDESGLLCNKQENCCAQIVLANRNCYRAQSFATARRIAEAC
DIPEGKYSISFQSRLSAAGPVWIQPYTDEELVKLAKAGVKKMAVVVPSFT
ADCLETLEEIGIRGREDFIEAGGETLDLIPCLNSDEEWVKGMIQILKDSC
PMDTF*
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spliced messenger RNA

>Ggra6276.t1 ID=Ggra6276.t1|Name=Ggra6276.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1218bp|location=Sequence derived from alignment at tig00000879_pilon:389564..390781- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTTGTGACACCGACCCCTTTCCGCTCTCGCGTCGCGCAGAGAAA
GCAACAAGTCTCGTCGCGTCGTCCCGTTTTGGCCACCGCCTTAGAACCAA
AAACGGCGGTGGCTCCCAAATTAGATAGGCAGGTTGAGCTTGGGAAGGAA
GTATCACCGCCGTTTATAGGACGAACCGGGATTTTGTTGGTCAACATTGG
CACTCCCGCTTCTCTTTCTGTCCCGGACGTGCGTGAGTATCTACGACAGT
TTCTTGGCGATTCACGGGTGGTAGATCTCAATCCCATCGTCAAATGGTTT
GTTCTCAATTTGTTCATCTTACGTACTCGCCCAAAAGAAAGTGCCGAGGC
GTATTCAAACATCTGGGATGAGGAGAGAGGTTCACCATTGCTCTATCACT
CTGAAGATATGGCCGCAAAGCTGCAGAGTGCTCTGGGAGAGAAGTATGCT
GTGGCCGTAGGTATGCAGTATTGTCAGCCGAATGTTTATGACGTCATGGA
GGATCTACGCGCGAAGGGCACCGATAGACTTATTGTGGTGCCCATGTATC
CTCAATATGCATCCTCCGCAACAGGTGCTGCTATTGAAATTGTTTACAAG
GCGGCCGCAAAGGTTTATTCAACACCATACTTGCACATAGTTCCCGCTTT
TTACGACCACCCGTCTTACATTTCCTCCTATGCCGCCATTATCAAGCGTA
CTATCGGCGAACGCTGCGAGAATTATGATCATCTGCTCATGTCGTTCCAT
GGCGTTCCACAAACCCATTGCGAACGTACAGATGAAAGCGGTCTTCTCTG
CAATAAGCAAGAAAACTGTTGCGCACAAATCGTGCTGGCAAATCGGAACT
GTTATCGCGCGCAGTCGTTCGCTACAGCCAGACGTATCGCAGAAGCTTGT
GACATTCCGGAAGGCAAGTATTCAATTTCCTTCCAATCACGGCTTTCAGC
TGCAGGGCCTGTATGGATACAGCCTTACACAGACGAGGAACTTGTGAAGC
TTGCCAAGGCTGGCGTGAAGAAAATGGCTGTGGTTGTGCCAAGTTTCACA
GCTGACTGTTTGGAAACGCTTGAAGAAATTGGTATTCGAGGGCGGGAAGA
CTTTATTGAGGCTGGTGGTGAGACTCTTGACCTCATTCCTTGCCTCAATT
CTGACGAAGAATGGGTTAAAGGTATGATTCAAATCCTGAAGGACTCGTGT
CCTATGGATACGTTTTAA
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protein sequence of Ggra6276.t1

>Ggra6276.t1 ID=Ggra6276.t1|Name=Ggra6276.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=406bp
MAFVTPTPFRSRVAQRKQQVSSRRPVLATALEPKTAVAPKLDRQVELGKE
VSPPFIGRTGILLVNIGTPASLSVPDVREYLRQFLGDSRVVDLNPIVKWF
VLNLFILRTRPKESAEAYSNIWDEERGSPLLYHSEDMAAKLQSALGEKYA
VAVGMQYCQPNVYDVMEDLRAKGTDRLIVVPMYPQYASSATGAAIEIVYK
AAAKVYSTPYLHIVPAFYDHPSYISSYAAIIKRTIGERCENYDHLLMSFH
GVPQTHCERTDESGLLCNKQENCCAQIVLANRNCYRAQSFATARRIAEAC
DIPEGKYSISFQSRLSAAGPVWIQPYTDEELVKLAKAGVKKMAVVVPSFT
ADCLETLEEIGIRGREDFIEAGGETLDLIPCLNSDEEWVKGMIQILKDSC
PMDTF*
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mRNA from alignment at tig00000879_pilon:389564..390781-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6276.t1 ID=Ggra6276.t1|Name=Ggra6276.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1218bp|location=Sequence derived from alignment at tig00000879_pilon:389564..390781- (Gracilaria gracilis GNS1m male)
ATGGCTTTTGTGACACCGACCCCTTTCCGCTCTCGCGTCGCGCAGAGAAA
GCAACAAGTCTCGTCGCGTCGTCCCGTTTTGGCCACCGCCTTAGAACCAA
AAACGGCGGTGGCTCCCAAATTAGATAGGCAGGTTGAGCTTGGGAAGGAA
GTATCACCGCCGTTTATAGGACGAACCGGGATTTTGTTGGTCAACATTGG
CACTCCCGCTTCTCTTTCTGTCCCGGACGTGCGTGAGTATCTACGACAGT
TTCTTGGCGATTCACGGGTGGTAGATCTCAATCCCATCGTCAAATGGTTT
GTTCTCAATTTGTTCATCTTACGTACTCGCCCAAAAGAAAGTGCCGAGGC
GTATTCAAACATCTGGGATGAGGAGAGAGGTTCACCATTGCTCTATCACT
CTGAAGATATGGCCGCAAAGCTGCAGAGTGCTCTGGGAGAGAAGTATGCT
GTGGCCGTAGGTATGCAGTATTGTCAGCCGAATGTTTATGACGTCATGGA
GGATCTACGCGCGAAGGGCACCGATAGACTTATTGTGGTGCCCATGTATC
CTCAATATGCATCCTCCGCAACAGGTGCTGCTATTGAAATTGTTTACAAG
GCGGCCGCAAAGGTTTATTCAACACCATACTTGCACATAGTTCCCGCTTT
TTACGACCACCCGTCTTACATTTCCTCCTATGCCGCCATTATCAAGCGTA
CTATCGGCGAACGCTGCGAGAATTATGATCATCTGCTCATGTCGTTCCAT
GGCGTTCCACAAACCCATTGCGAACGTACAGATGAAAGCGGTCTTCTCTG
CAATAAGCAAGAAAACTGTTGCGCACAAATCGTGCTGGCAAATCGGAACT
GTTATCGCGCGCAGTCGTTCGCTACAGCCAGACGTATCGCAGAAGCTTGT
GACATTCCGGAAGGCAAGTATTCAATTTCCTTCCAATCACGGCTTTCAGC
TGCAGGGCCTGTATGGATACAGCCTTACACAGACGAGGAACTTGTGAAGC
TTGCCAAGGCTGGCGTGAAGAAAATGGCTGTGGTTGTGCCAAGTTTCACA
GCTGACTGTTTGGAAACGCTTGAAGAAATTGGTATTCGAGGGCGGGAAGA
CTTTATTGAGGCTGGTGGTGAGACTCTTGACCTCATTCCTTGCCTCAATT
CTGACGAAGAATGGGTTAAAGGTATGATTCAAATCCTGAAGGACTCGTGT
CCTATGGATACGTTTTAA
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Coding sequence (CDS) from alignment at tig00000879_pilon:389564..390781-

>Ggra6276.t1 ID=Ggra6276.t1|Name=Ggra6276.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1218bp|location=Sequence derived from alignment at tig00000879_pilon:389564..390781- (Gracilaria gracilis GNS1m male)
ATGGCTTTTGTGACACCGACCCCTTTCCGCTCTCGCGTCGCGCAGAGAAA
GCAACAAGTCTCGTCGCGTCGTCCCGTTTTGGCCACCGCCTTAGAACCAA
AAACGGCGGTGGCTCCCAAATTAGATAGGCAGGTTGAGCTTGGGAAGGAA
GTATCACCGCCGTTTATAGGACGAACCGGGATTTTGTTGGTCAACATTGG
CACTCCCGCTTCTCTTTCTGTCCCGGACGTGCGTGAGTATCTACGACAGT
TTCTTGGCGATTCACGGGTGGTAGATCTCAATCCCATCGTCAAATGGTTT
GTTCTCAATTTGTTCATCTTACGTACTCGCCCAAAAGAAAGTGCCGAGGC
GTATTCAAACATCTGGGATGAGGAGAGAGGTTCACCATTGCTCTATCACT
CTGAAGATATGGCCGCAAAGCTGCAGAGTGCTCTGGGAGAGAAGTATGCT
GTGGCCGTAGGTATGCAGTATTGTCAGCCGAATGTTTATGACGTCATGGA
GGATCTACGCGCGAAGGGCACCGATAGACTTATTGTGGTGCCCATGTATC
CTCAATATGCATCCTCCGCAACAGGTGCTGCTATTGAAATTGTTTACAAG
GCGGCCGCAAAGGTTTATTCAACACCATACTTGCACATAGTTCCCGCTTT
TTACGACCACCCGTCTTACATTTCCTCCTATGCCGCCATTATCAAGCGTA
CTATCGGCGAACGCTGCGAGAATTATGATCATCTGCTCATGTCGTTCCAT
GGCGTTCCACAAACCCATTGCGAACGTACAGATGAAAGCGGTCTTCTCTG
CAATAAGCAAGAAAACTGTTGCGCACAAATCGTGCTGGCAAATCGGAACT
GTTATCGCGCGCAGTCGTTCGCTACAGCCAGACGTATCGCAGAAGCTTGT
GACATTCCGGAAGGCAAGTATTCAATTTCCTTCCAATCACGGCTTTCAGC
TGCAGGGCCTGTATGGATACAGCCTTACACAGACGAGGAACTTGTGAAGC
TTGCCAAGGCTGGCGTGAAGAAAATGGCTGTGGTTGTGCCAAGTTTCACA
GCTGACTGTTTGGAAACGCTTGAAGAAATTGGTATTCGAGGGCGGGAAGA
CTTTATTGAGGCTGGTGGTGAGACTCTTGACCTCATTCCTTGCCTCAATT
CTGACGAAGAATGGGTTAAAGGTATGATTCAAATCCTGAAGGACTCGTGT
CCTATGGATACGTTTTAA
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